Array 1 64725-68191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEIL01000034.1 Streptococcus suis strain S15W, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 64725 36 100.0 30 .................................... AACAGACCTATGGGGTAAAACAAACAGATG 64791 36 100.0 30 .................................... GGCCAGCATCAAATCATAATACTCCGCTTT 64857 36 100.0 30 .................................... TTGACCTTGATGGAGAAAGTATCATGAGTA 64923 36 100.0 30 .................................... TTCTCTCCGGTGATAACATAGCAATCTATT 64989 36 100.0 30 .................................... ACGAATTAGATTTTCTACGACTGGCCGTCG 65055 36 100.0 30 .................................... ATCGAATTCGACACGGTTAGATTATGCGAT 65121 36 100.0 30 .................................... CGAAAAAACCTTTGCTCGTGCATGGTTTGA 65187 36 100.0 30 .................................... TAATTACAGAAACAGGAAGTCCAATGTCAG 65253 36 100.0 30 .................................... CTCAGTAATATCGTAAGAGTACAACGACCG 65319 36 100.0 30 .................................... TGCAGAAAGAACTCAAAACGTACAAGGACA 65385 36 100.0 30 .................................... AACGATGTGGACCAAGCGGCGCATAGCTAC 65451 36 100.0 30 .................................... CATACGAAGCCATTATAATCAACACGAACA 65517 36 100.0 30 .................................... TTGTCATCGAACCTGGGTGGAACAGGTACT 65583 36 100.0 30 .................................... TATGCAGATATGAAAATGGTAAGTACCACT 65649 36 100.0 30 .................................... GCAACAGATTAGGTATTAAGTTGACAGGGC 65715 36 100.0 30 .................................... ACAACATAGCAACTCTACCACATGATGTCT 65781 36 100.0 30 .................................... GTCGTTATCCCCATAACATTTGTAGTAAAT 65847 36 100.0 30 .................................... TGACTTTTCTTTAGAAACTTGTATATCACC 65913 36 100.0 30 .................................... CAATGGGGTATTCACGAAATCCCTTCAAAT 65979 36 100.0 30 .................................... AATCAACTACAGACAGTTTTACTTTCTTAA 66045 36 100.0 30 .................................... TAGAAAGTATAAATTATATTCAGTCGGTTA 66111 36 100.0 30 .................................... GGTTATTCCAGCGGTGAAGGTGGACACACT 66177 36 100.0 30 .................................... CGGTAAGTGTATTCCACGAACGATTCGATG 66243 36 100.0 30 .................................... GCAGGTCTATCAGATACACTCGTTCCATTT 66309 36 100.0 30 .................................... AGGTATCTGGATCTAATGGGCTTAAGACAC 66375 36 100.0 30 .................................... AGACAAAAAAGCGACCTTGTTTCATCAACT 66441 36 100.0 30 .................................... CCGTCTGCAGTTCGGACTTAGCAGTGTTTA 66507 36 100.0 30 .................................... AAGCTGGCGTTAGAAAGACCATATTCACAT 66573 36 100.0 30 .................................... TATAACCCATTATACAAATCATCTACTACC 66639 36 100.0 30 .................................... ACTAACAACATTACAGCTATCGTTCCAGCT 66705 36 100.0 30 .................................... GCGGGTCTTGGCATGGTGGCGCAAGCGCCA 66771 36 100.0 30 .................................... CACAGGAAAGATGTGATGAATCATTTCAGC 66837 36 100.0 30 .................................... CAAAAATTCAGGCGAAACATCAACATTCTT 66903 36 100.0 30 .................................... AACGTAAATAAGGAGCTTATAGAGTGTATA 66969 36 100.0 30 .................................... TGCTCTATTGTTCTTCTGGTGCTGGTTCTT 67035 36 100.0 30 .................................... CGTAAACACGTGAGAAGCGTTGATACATAA 67101 36 100.0 30 .................................... AGCCTTTCCAATTTTCTAAACATTGACATT 67167 36 100.0 30 .................................... AAGCGAGAATTAGACAACCATTGACGGTCT 67233 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 67299 36 100.0 30 .................................... TAACTTTATTTAGTAACGTTTATAACAGTT 67365 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 67431 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 67497 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 67563 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 67629 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 67695 36 100.0 30 .................................... TACTATTGCAGATGCTACAAACTACGCTAT 67761 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 67826 36 100.0 30 .................................... TCAGACGGCTGTTTGCAATCAGTAACATCA 67892 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 67958 36 100.0 30 .................................... CGAAGGCATGGCCTTGATTTATCAAAGATT 68024 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 68090 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 68156 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 53 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CTGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //