Array 1 7759-9331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLE010000003.1 Veillonella atypica strain DFI.4.11 NODFCMGE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 7759 36 100.0 30 .................................... TAAGTCACTAGAATCCCAATCATAGATAGA 7825 36 100.0 30 .................................... TTCTGTTTGAGTATACTTTGAACGTTACGG 7891 36 100.0 30 .................................... AAGAAGGGTATCTAAGAAGATAAGAGATAC 7957 36 100.0 30 .................................... TAAGCTGAGTATTGTAGATAGAGTTCTCCA 8023 36 100.0 30 .................................... CAGTGATAGCTAAGAATATCTTCTTAGCAA 8089 36 100.0 30 .................................... TATCTATTGCAAATAATAAGGATAGTCGCT 8155 36 100.0 30 .................................... CTTTATTAGAGTTGGTGAATTCATATTAAT 8221 36 100.0 30 .................................... GAAAGCAACGATATTTAAAAGTAACTTCTA 8287 36 100.0 30 .................................... CGTTCCCTTGATAGTCGCCGTGACTCTTCA 8353 36 100.0 30 .................................... GTCTTGATTAGTGAAATTTATTTTCTTGTT 8419 36 100.0 30 .................................... GATAGGATAGGAATAAATGGATTTCTATTA 8485 36 100.0 30 .................................... TATTATGATGTGTTTTAACTCGTGTCTCAG 8551 36 100.0 30 .................................... AGTCTTTTAGGTATATGTGCGATAGGTATG 8617 36 100.0 30 .................................... GATAAAATCATAGAACGTTGCATTGATCTT 8683 36 100.0 30 .................................... GTGGCGTCAATAATGCCTTTCTTCGCATCG 8749 36 100.0 30 .................................... TCAAAAGAATCAAGATACAACAAAGGAATA 8815 36 100.0 30 .................................... ATATCCTGTAAAGACCTCAATAAGTTAGTC 8881 36 100.0 30 .................................... TCTTTAACGTACAATCATAAGCGGAACACC 8947 36 100.0 30 .................................... TAATTTCTCAATTTTTTCTGCTTTTTTGTG 9013 36 100.0 30 .................................... ATAAGGAAGCTGGTAATGACCAGTTCGACG 9079 36 97.2 30 ......................C............. ATCTTAAACAACGAATCTTATCATGGATGA 9145 36 97.2 30 ......................C............. CTAAGAAGAATTTCATTTGCTCCTGCATAT 9211 36 94.4 49 ......................C............T GAAATGTTTACTATAAAAAATTGCCATTAAGTATGCCCACTTACACAGG 9296 35 83.3 0 ...........T...G.-.CG.............T. | T [9321] ========== ====== ====== ====== ==================================== ================================================= ================== 24 36 98.8 31 GTTTTAGTACTCTGTAATTTTTTGCTATGATAAAAC # Left flank : CGCCAGTTTCCTAAACTGTAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGTAGGATAGAGCAGCAGTTTCGCCTTGATACTCATCTGAATCTATTAAGGTAGGGCTTTATGCCGAAATCAGAGGACACAATTCATTTGTGTCCTTTTTTCATAGAATTTCAATATTATTAGATATTAGTATGTGTATAATTGGTTTTGGGTAAGAAATAATTTAGCTGATGAATAAAAATTTAAAAAGTGTTGACATATAAGAGGGACTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTATTAGGTAGTTAAACAATAGTATATGCAAATTTTGTTAGTAGTACATATTACTAATGTTTTTTGTGGAATTTGAGCACAGGTCTTATGATCTGTGTTTTTTTATTTATTGATTTATCATAGCGAAAGCTTATAAAAGTGCTTAACTTCGTCGTTGAG # Right flank : CTAGAATAATAAAACTCAAAGTTTTTAAATTATTATAATTATTTATATTAAATGGAACTAATAATTATTAGGGGAGAGTATATATGAGATATATACTAGGATTAGATATAGGGGTTGCTTCTGTTGGTTATGCAATTATTGATGAAAAATATAATGTTCTAATTAGTGGCGTAAGATTATTTCGAGAAGGTACAGCAGAGGAGAATGCAGGGCGGAGAGGGTTTAGAAGTAGTCGTAGAAGTATACGGCGGAGTCGACATAGATTAGATCGGCTAACAGACCTTTTATCAAGTGTCTTGAATGTAAGTGGTAACCAGTCTTGTACGAATGTTTATGAAGTTAGAGTTAGAGGTCTCAGTAGTAAGCTAACTCCTGATGAGTTACTGGCTTCAATCATACAACTAGCTAAACACAGAGGTATATTCTATTTAAGCCCAGAAGATCTTGCTGCTGAAGATGGCAGTAATCAAAGTGTGGCGGATATTATCCGAACTAATGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTTGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 56609-57084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLE010000007.1 Veillonella atypica strain DFI.4.11 NODFCMGE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 56609 35 100.0 44 ................................... TATATAATCTAGCAATAATAGAGAAGATATTAATATCTTTACTG 56688 35 100.0 37 ................................... AATAGTACAAGCTAGACAATCTATGGACTATGCTATC 56760 35 100.0 38 ................................... TTTCTACTTCGAGGAGAAGTGTGTTATCATCCATATTG 56833 35 100.0 37 ................................... CCTTTAGAGATATGCACCTTTTGTGACTTCTCATCGA 56905 35 100.0 38 ................................... ATTTTGTCGCTACTAAAGATAAGGCTTTTAACCCATTT 56978 35 100.0 36 ................................... CTTTATCAGGATCTTGTGCAAATAGCCCAATTTCAG 57049 35 88.6 0 ..............................ATG.T | A [57078] ========== ====== ====== ====== =================================== ============================================ ================== 7 35 98.4 38 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : AATAGGAACAACAATATATCGGGCAACACGGGACTAGTTAGCATTCTGTAATAAAAGGAGGTGTTACATATGTCAATTATACTAGGATTATTAGTGCTGTATGTTGTGGTATCATGTTTTGGAGAATAATTTTGAAAGTAATAAGTGAATATAAGAATCGATAGACCTATTTGTGTGATCTGATGCGAGTAGGTCTTTTTTTGTAAATTAGTTATGAAATAGATTTTCTTGGCTTATAAAAGTTATCAAAATAGCGATAAGCCCAGTTACTAACTGTATTTTATAAAAATCGTTCCTTTTAGAAAATCTCCCTACATATTGACGTAAAACTCGAAAACCCTTATAATTACTGTAATCTTAGAAAAATCATTTTCTACCAGTATTTATCTAGGTTCGTAGACATAATGAACCGAATGAGAGCATGTTTTGACCGTTTACGGTGTGAGGTTTTCTAAAACCTAATTTTGAGCCCCATGAATACTGGCTTTCTAGGACCCGCT # Right flank : TGAATATACTCACAAATCTTTAGTTATTGCCTTCATGCTAGAAAACCTTAACCAGTAACATATCTTTTAAAATTTTATGATTTTTAATAACATACCGTAAGTAAATACCCCCAGTAGACAATTGTGTTTACTGGGGGATATTTTACTTATTTTACAATATGGTTTTTTGTCATAGCTATTATTAAACTAATTTAATGTATAGTATTGCAATTATTGACGGAACTTTATGACTACCCTATAATTAAAATTAATAATTCATGAAATTCTCATGATTTACAAAGTATTTGTAAATGGTTGAGGTGGCATATGGGGACACATAATTTTTCAAGATTAGAGACCATAAATCCTGAGATGTATAAAATGGCTACGGATTCTGAACGGTATTTGTATGCAGATCATCAAATTGCATTAGTTAAGTTGCGCGTATTTGCTGAGAGTTTTACTAATTATTTGTATAACGACTTACAGTTGCCTAATAATCCTAATGATAGTTTTTGTGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 63734-65000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLE010000007.1 Veillonella atypica strain DFI.4.11 NODFCMGE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 63734 35 100.0 37 ................................... TAATAGGCCAAACGCATCATTAATACGTTTCTTGAAA 63806 35 100.0 35 ................................... TTTCTATGGCATCTGAAAAAGTCAAAGCTAAAATT 63876 35 100.0 36 ................................... TCTTCAAAGTTACTTTCATTTACTAATTCAATAATC 63947 35 100.0 41 ................................... CAGAATAAATAATTCTTTAAATCTATAGGATTGACTCCTTC 64023 35 100.0 36 ................................... TTCCAATTTACCATTGGCTCGCCACCAAATAGATTA 64094 35 100.0 33 ................................... TGATTATGAATGGCTCGGTACTTCAAGATATTA 64162 35 100.0 41 ................................... TCTTCAGCTTTAGCTGTCCAGAATGCTTTTTCTCTATCAGT 64238 35 100.0 43 ................................... TGCCACGAGATCGAAAAGGCATCCGAATGCCAATAACCCTGTT 64316 35 100.0 39 ................................... ATAATCCTAGACCAGCTCTTATGGTATTCATATTATTAT 64390 35 100.0 37 ................................... GCTTAATGAATTCTTTTTCCTCTGTAATTGTTTCCTC 64462 35 100.0 36 ................................... GTTAATATTTGTGAAGAACGACCACATGATTTCGTA 64533 35 100.0 34 ................................... TTAGGTGATTCAGCCAATTTAAATAGATCGTCTA 64602 35 100.0 35 ................................... CAGTCACGCTGTTAGTACCTAAGGCTACACTATTA 64672 35 100.0 42 ................................... GTCCTCAAATAATGTACCAACATCATAAGATAAATCTAGTTC 64749 35 100.0 37 ................................... TCACCAACTATTTCTCCTGCTCTATTTGCTTGCTTAA 64821 35 91.4 36 ...................C.TG............ GCTGGGAAGATGATCGTATTATGATAATCAATCTTA 64892 35 97.1 38 .....................T............. AATGAATATACTGTGACAATACGTTTAAATTTATTTAA 64965 35 82.9 0 ..................A..T.......C..CGA | A [64994] ========== ====== ====== ====== =================================== =========================================== ================== 18 35 98.4 37 GTTGCAACAGTACTTACCGTTCACGGTATTGAAAC # Left flank : TAGCAGTGCTAGATGCACTTGATGAAGACTAGTTTTAATTGAAATATTTTCGTATATATTATGAGGAGGTGTTTTATATGTTCCCATCTATAGATTTTGGTTTAGTACATGTATGTGTTGAGGTATAATTTAAAAGTGAATAATGAATTAGATAATGGTTAGACCTATTCGTGTGATATCATGCGGGTAGGTCTTTTTTATAATATACTAGCAGTGGAAAAGGTTTTCTTGATCTATAAAAGTTGTCAAAATAGCAATAAGCCCAGTTATTACCTGTATTTTATAAAAATCGTTCCTTTTAGAAAATCTCCCCACATATTGACGTAAAACTCGAAAACCCTTATAATTACTGTAATCTTAGAAAAATCATTTTCTACCAGTATTTATCTAGGTTCGTAGACATAATGAACCGAATGAGAGCATGTTTTGACCGTTTACGGTGTGAGGTTTTCTAAAACCTAATTTTGAGCCCCATGAATACTGGATTTCTAGGACCCGCT # Right flank : ATGCGACCTTAGTATTTCTAACTTATAATTACATATCTATTACTAAAAGAGCTGTGCTCTCTGTGTTATAACAGAGGCACAGCTTTTTCATTCCTAGTTTTTCTGATTATTGTACTTCTCTCTAGATTTGTATAATGAATGTAGTTAATGAGTTTGTTATTAGTTTGGAGGTGTTGTATGCAGTATCTTATTTCATATGATATTTCAGATACAAAAATCAGAAACAAGGTTGTTAAGTATTTAGAATCTTTTTGCTATCGCGTTCAATATAGCGTATTTTTATGCTCTCATGTACGTGTACGCATTGAAACAATTATAAAACAATTAGAGAAATTAACCGGTAATGATATGACAAAGCGATTGCTTGTGATTTCAATTTCAGATACGGCTAAGACGCCAATATGGTGTAATCAGGACCTTCCTGTTAATGAGGGACCTGTATTAATCATTTAATTTATAGGAGGTGGTATACATGGTAGAAACAGTATATGTAATGACAC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTCACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 76045-78141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLE010000007.1 Veillonella atypica strain DFI.4.11 NODFCMGE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 76045 35 100.0 37 ................................... CTTTCAAAGTGCTATCTTTGAAGTATGCTTCTTTATA 76117 35 100.0 37 ................................... GGCACTTCCATCGAAGTACTCGTATCGCTCTGTTAAA 76189 35 100.0 33 ................................... ATTAATACGCCGTTAAAGACGTGTTCTGCTTTG 76257 35 100.0 39 ................................... GTTCAAAAGCGGTCGATGTCTGATGCTTATAACCTTAAA 76331 35 100.0 42 ................................... TTTTGAAAAAACTCCAAAGAAGTTTTTACCTTCTTTAGATTG 76408 35 100.0 38 ................................... ACGTAAATTTCATTATCTTTAACAAGCTTTACGCCAAA 76481 35 100.0 40 ................................... GCGTATAAACCTCGTGTATTAGAAGATTTATTTAAGTAAT 76556 35 100.0 40 ................................... ACGTTTTAATTTTAGTATTCTTATTTAACATGATATGTTT 76631 35 100.0 40 ................................... TTTCATCTACCTCCAAGAAAGAAAGAAAAATCGGAGTGTT 76706 35 100.0 35 ................................... ATATAATAAAAACTAAATTATTTAGAAGATGTGAT 76776 35 100.0 46 ................................... CTAACCATGAGCTTGAATTCTTCAAATGCTTCACAAGACATAACAC 76857 35 100.0 39 ................................... GAAATATAGCCTTTTACTAATGTCATGTTATTCATTTGA 76931 35 100.0 40 ................................... TGATTATTTATCATCACCTTCCTTCATAAACTCTTGGGCA 77006 35 100.0 37 ................................... GTAGCAAGTGTAGCCTCCTTTTCACCGCGGAATGTTA 77078 35 100.0 40 ................................... TTTCATCTACCTCCAAGAAAGAAAGAAAAATCGGAGTGTT 77153 35 100.0 38 ................................... CATCTAAGGCAGCATTAACTAAACCTTGAGCTAACTTT 77226 35 100.0 38 ................................... TCTTTTTCAATTGTGTTGAACATAGCTTCGTCCAATAC 77299 35 100.0 36 ................................... TCATTTTCAAAAGTGTCAATAACCGTAACATTATAA 77370 35 100.0 39 ................................... ACTACATGCAATTGGTAAGAGGTAGGTTGTATTGGTGTC 77444 35 100.0 36 ................................... CTTCAAACTTCTCGCGCTCAGACTCAAAAACCATAA 77515 35 100.0 41 ................................... TTGCGGCGTTGCATGCAACCTTTGTCGTTCTCGTACTTCTT 77591 35 100.0 40 ................................... CTAACGCCTCGTGATTCGGGCGCTGAAGCTGGCTCAGGCA 77666 35 97.1 38 .................T................. GAGAACTCACGGACTGCAATAAACATGTCCCCATAGAC 77739 35 97.1 36 .............C..................... GGCATGTTAGAAGTATTTGTTTTTACAATTTCTCTG 77810 35 88.6 40 ...A.........C.....T..A............ TTTGGCAACAAGAAGAATTTGTAACCATGATCTTTTGCCA 77885 35 91.4 39 .............C.....T..A............ CAGATAGGATCATATGCTGTCCCAGGACCAGCTTTGGCC 77959 35 97.1 40 .............C..................... ACTAGATATTCTGCAATATCAATTAGTTAATCTTTTTCTG 78034 35 94.3 38 ...................T..A............ CCATCAAAATTGATTTCGTAGCACCCTTGCATTGTGAG 78107 35 97.1 0 ....T.............................. | ========== ====== ====== ====== =================================== ============================================== ================== 29 35 98.7 39 GTTGCAACAGTACTTACCGCTTGCGGTATTGAAAC # Left flank : CTTTTAGTTCCTAGTTTTTTTGATTATCTCATTAGGTGAAAGCTACGTATAATGAAATCACAAGTTAAGCCTACGAGTTAGAGCATCATGTAGCATGGTCGTTTCCTCCGCGACCCATATCGTTACAGCGTAACGGTATACAATACACAGACCCTTTGATCGGAACCGCCCTTGTGGCGGATGCCATGGTGCTTTAGCTGGTGGGCTTAATCTATTTTTATTTTGCTATAGTAGTTATGAAATTTGCATAGTAAAGAAGTCTGTTTATTACTGTAATAGAATCTCTTAAAATAAATGAAAGGAAAATGAATTAAATTGTTGACGTAAAATCTATAAACCCTTATAATAACTGTATCTTAAGAAAAATCATTTTCTTCCAGTATTTATCTATATCCATAGGCCTTGTGGATCAAATGGGAGCGTGTTTTTACCGTTTACGGTGTGAGGTTTTCCAAAACCTATTTTTAAGCCCCATGAATACTGGCTTTGTAAGGCCTGCT # Right flank : CTCGTCTAACTGAAATTGCCATGTCCACATTATTTAGATAGGATTAGTACCTATCACATCAAAATCATAATTATCATTTTAGAGCTGTTATAGAACAGCTCTTTTTTGATTCCTAGTAAAAGTTATTTTCGCTATATTTTTAATCTCCCTATAATGAACTCATAAGTTAAGCTCTCTGATTGTGACATCATGTGACATGATATATACCTCCATGATGAATACAAAATATAATAGATTTTTTATAAAAGGAATCCTTAGATAATGTACTGATGTTCTTTCAGTGGCTTAGCCTAATTATGTTGTTTGTATATAAAATAGGAGAGACTAGTATGCATCATATTACAATTAGCACTACAGGTATGTTTGATGAGATTCGCTCATCATTGGTTGCACCTGTAGAGAAAAAGGAAGTTCCAACATTTATATTTGCTTTGAATTTCTCTACTTATATAGATGAGTTCGATAGCAGCAAAAAATATGAACTAGAGGATCAAGATATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //