Array 1 27581-26752 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKK01000022.1 Actinomyces ruminicola strain DPC 7226 NODE_22_length_36707_cov_129.718_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 27580 36 100.0 36 .................................... CACGCTGAGTATGCGACCAGGCCGTCGCCGGAGTAC 27508 36 100.0 36 .................................... GGTTCTTCTTTCTCTCTACTCTCTACTCTGCTTGGC 27436 36 100.0 36 .................................... GAGTGCACGCTAGCGTTCACCAACATCGGTGGCCGT 27364 36 100.0 36 .................................... ATCCAGCGTCACCTCAACACCCGACGCATCCACCGC 27292 36 100.0 36 .................................... AAGGCCCCGACGGCCTACGGCCGCAAGCCCGCCGAC 27220 36 100.0 36 .................................... TTGGACGGCTTTACCTGGAAGGGTAAGGCGGTGATG 27148 36 100.0 36 .................................... CTGCGCATGACCCAGCATGACGTCGAGGTCTTGGAC 27076 36 100.0 36 .................................... ACGCGGTACTCCAGCTGATCCAGGTCCACCGACTTG 27004 36 97.2 36 ..................................A. GACCACACCTTCGCCCCGCCGAAGAGCGTGTCCGTA 26932 36 86.1 35 ..........T.C.G.G.A................. CTCAACATCACCGGGATCTCAACCGTCACTGGTAA 26861 36 86.1 38 ..........T.C.G.G.A................. ATCTCGCGCTTGAGGTCACGCAGCTTGCGGGCGCACTC 26787 36 94.4 0 ......................C...........A. | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 97.0 36 GTCTTCCCGGCCTTCATGGCCGGGCTCCATTGAGGC # Left flank : ATGTTGGGGGAGTTGGATGACTACACGGCGATGGTGACCAGATGAGGACGAACCGACACCGGTATCTCATCGCGTACGACATCCGCAAGCCCGGGCGGCTGCGCCGCATCTGTAAGCTGATGGAGGCCAACGGCGAACGCCTCCAGTACTCTGTGTTCATCTGCGACCTGAACCGGACCGAGCTGGTTCACTTAAGGGCTGACAGCGAGGAGGTCATGAACCTAGACGAGGACTCGGTGGTGATCGTCGACCTCGGCGAACTGGGGGAGGACCGCTTCACGTTCGTCGGTCGGCGCGCGGGTCTGCCCACACAGGGGGCTCAGATTGTATAGCGAGCGCTCCGGTGCCGTCCCGATTCCCGGGGAGTGCTCGAAAGCGCGGTATGACGGGGTTTTCTGGTGGTCGGCAGCCGAGCTGGCGCAATTGGACTGCCTGTTTCTGCGGCAGCGCTTGCGAGACCGCGTAGAATCCTTGACCAGCCGCGGCAAAATCCGCGAGCT # Right flank : AGAATGATTGGGCGAATGCGCTATCTGTCGGCTCTTCCGGTTTGAGGGTGTGGCTGGGCGGGTGTGGGTGTTGTTGGCGTTGGGTGGTGAGTGGTTACGGGCCGGTCGGGTGAGTGTCCCTCGGGGCGGCGCACGCTCAGCCACCTTGCCACTCCGACCTAACAGCGAGTTTTGCCCGGTATTTCAACGTTCTTGGTTTTGGGTCGAAGGATGTTGTTCGGCTCCCACGTGCGCCGCGGGGGTCGGCGCACGTGGGAGCCGAATGCTCTGTTCACCGACTGAGGTGTTTTCCGCATGATTCCGCCAAATCCCTAAAACAGCGCCACAACTGAGCGTGCGGCGCGGTCGGGCCGGGACCACCCGCGCGCGGGTTCGGCTCTTGGCACTTGAGGACGTGACCACGATAAGCGCCCGAGGCCGTACAGAAGACGGGGCACCCACGGTTGTGGAGGATCCGCGGACACCGACACGGCTGGCGCAATTCGCGCCGAACCTGGACA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGCCTTCATGGCCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.90,-15.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 22482-24283 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKK01000026.1 Actinomyces ruminicola strain DPC 7226 NODE_26_length_34578_cov_171.322_ID_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 22482 37 100.0 37 ..................................... GCGGTGGAGTGTATGCAAAACACCCCGTCCGTTTTTT 22556 37 100.0 37 ..................................... TAGTAGGGCAGTTCGGGCAAATCCGAAGGGGGCTCAA 22630 37 100.0 37 ..................................... AAGACGGTTTCAAAGATGGCGGTCATTTTGCTTCCTT 22704 37 100.0 32 ..................................... TAGTCTGTAATGTCTCGTCAATCTCATCGCGG 22773 37 100.0 37 ..................................... TATGGGAGTGTTATACTCCTCCTGTATGCCCGCTCGA 22847 37 100.0 35 ..................................... CACACCCCGCAGAACGCCCCTCTAGATAGGTGTCA 22919 37 100.0 37 ..................................... CGCCCCTCCAGGGCGCGGCGCGCCCTGTCGCCGGTAG 22993 37 100.0 47 ..................................... CTCCGTGACAGCCGCGATAGGCCTCTCCATGAGGAGCGTGGCCGCAG 23077 37 100.0 37 ..................................... GCTCCGCCGCGGGGGCGGCGGGTGCGGCCTCGGTCTC 23151 37 100.0 36 ..................................... AAACTCCTGCCTCAAGAGGAAATCATCTCCTTCGAG 23224 37 100.0 37 ..................................... AGGCGCTCCGTGGCGTGCACGTCGTACGCTCCATCAA 23298 37 100.0 35 ..................................... CGCCCGTGAACTGGCGGATGCGCGCTACCAGGGCC 23370 37 100.0 35 ..................................... AATGATGACTAGGCTGCGGTAGTTGGTGAGGTCAC 23442 37 100.0 37 ..................................... AAAGGAGTTCACCTCCTCCGTCTCAGCGACAGCGTCG 23516 37 100.0 38 ..................................... CCGCCGAAGACGGCCTTGATCTGGTCGGCGAGCATGGG 23591 37 100.0 37 ..................................... TCGTCGTAGAGTCCGTGGGACAGGTCCTCGTACTCGA 23665 37 100.0 35 ..................................... ACCGACGCAGCCACAGCTCCTCCCGCCAAGCACGG 23737 37 100.0 34 ..................................... GCTATCCCCTCCTCAGCCTCGGGATCGTTGCCAC 23808 37 100.0 38 ..................................... ATCCCTTCACTAAAGGGCGTCGCCCTATTCCTCAAAAA 23883 37 100.0 36 ..................................... TGGACGGCGTACAGGGACAGGTGCTCGGCGATCCAA 23956 37 100.0 35 ..................................... GCGGCCGAGATCTCGTCCGCCACCCTCTCAATCAG 24028 37 100.0 36 ..................................... TGCAGTGTATTCGGCGTCGGCCGAGAGGATGGTGAT 24101 37 100.0 35 ..................................... CGAGGATCTCGTTCGGAGTGCCCGCATCGCCCAGA 24173 37 100.0 37 ..................................... TCCTCCGATTGACCTCTCGGGTCTCAGCGGCGTATGC 24247 37 91.9 0 ................................TG.G. | ========== ====== ====== ====== ===================================== =============================================== ================== 25 37 99.7 37 GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Left flank : ACAAGAGCGGTAAGAAGAGCTGTGGCGAGAGCCAGGACGAGTTCGGTGCGCTGGACCTCAGTGCATCCTGGTTCTCCAGGTTCGCGCAATTGCTGCGGGAGATTGAGGGATGATCGTAGGCGTGGGACGTCCGTGCGGTGTTGCTGGGAGCAGGCGCGGGCGAGCGGTTCCCCCGGGGCGTGGCGTCGACCCCGAAGGGCGTGTGTCGCGTGTGACAGCTGGTGTCTGTGAGGCGTGCGTATCTGGTGTGGCGTGCGCCGGGAGGTCACAATTCGGTCTACGGTACAAAGATTGGTACGTTTGGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTCCAACGAAAGGTGGTAGTTTTGGGGTGGTGTCAGTCGGTCCCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGAACGGCGCGGTTTCCAGGGGTAGGG # Right flank : CGCGGCGGACAGCCGCCTGTGGTGTGTTTCGGGCTATCGGCGTTTGGGGGTGTCGTGGGGGTTGTGGCTGGTTTGTTCGGCTCAGCCTTGCGTTTCCAGGACTTTTCTTCGGGGCCTTGGTGTGAACGTGGTGCTTTGGAGGTTCTTCGGGTTTGAGGGTGTGCTGGTTTTGGCCAGGCTGTGCTGCGGTGGTCGTGTTCGGGCGGGTGAGGTCGTACTCGGGCAGTGCCAAGCTGCCGAGAACGTCCTCGTGATCCCCGATCCCTCCACGTTCGTGAGGGACTGGGGTGCAAGAGGACGTTTTCGCCGGGCGCTGGTCGTCCTCGGGTGTAAGTGGTCGTAGTCGGATGAGCGAGGCCGTAGTGGTAGTCGGCCTGGCTCGCCCGGGTGTGTTTGCCGGTCGTCGGCGTCGAATGGACTGCCTGGGAGGCGCTCTCAGGCAGTCCGAACACGGGAACCGCAGGAACACGGCCCAAACAGGGAAGATCGGCGATGGCCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9911-10892 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKK01000012.1 Actinomyces ruminicola strain DPC 7226 NODE_12_length_46828_cov_164.843_ID_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9911 37 100.0 35 ..................................... GCTTCCGCTCCGCCTTGTAATCGGAGTCGTACTGG 9983 37 100.0 35 ..................................... TTCCTTGACACTCCCGGAAGTACTCGTCCCAGTGC 10055 37 100.0 34 ..................................... CGGCGTCTCCGCCGCTCATCTCTATCCGGTAGAC 10126 37 100.0 36 ..................................... AGCAATTCCGATCCCGCTCAGAACAAACTCGTCGCT 10199 37 100.0 36 ..................................... GCCAACCGTGTGGCCGTCCGCCTCCAAGGCTCGCAC 10272 37 100.0 37 ..................................... AAATTCCCGCTCGTCGGAAACAGATGCGAAGCTCATG 10346 37 100.0 38 ..................................... TCAGCTTTCGCTGAATTTGGGGGAGTTTACGATCGCAG 10421 37 100.0 37 ..................................... CCGTTGGGGTCACGGTCCGCAACGTGGTTGCTGTTGG 10495 37 100.0 37 ..................................... GCCTTTAGACGGAGTTTGCACGCGTCCGAGGCGCTGT 10569 37 94.6 34 .....T..........................G.... ACCTGCCCCCGGTCCTGCGGGAACTCCTTTGCGC 10640 37 97.3 34 ................................G.... TCGCCCACCTTGCCCCCAAAAGTTGCATAGAAGA 10711 37 97.3 38 ................................G.... TCGAGGCGGACCACGGACACCAGGTAGGGGGCCTCCCT 10786 37 97.3 33 ................................G.... GATTACTGCCGGTCCAGTTATTCGAGGGCTTTC 10856 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 98.8 36 GTCAGGAAGCACCTCGCACCTCAAGGTGCATTAAGAC # Left flank : CCCCAAACACGAAGCGCCGGTTTGCGGTCTGCTGCGCCGCTTAGTCGTCTGCTGTGTGCATCCGAGTTGTTCAACAGAGCGTTGACTGACGTTGTTGACGGTGAAGTGGCATGGTAATTGCCCGGCTGGGCGGTGGTGGTTGTGGTCTCTGCCGGGGGTGCCTGTGGTCGGCTGTGGGTGTCCGGAGGTGCGGAGAGCTGCGGTTGCGGGTGTGGCGTGTGGTGTTGTTGGGGCGTGTGTGACTGGTGCGATGCGCGCCCGATGGTCACGATTCGGTCTACGGTACAAAGATTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : CTTTGTCAGGCATGGTCTCGGCGTCGAGGTTGTAGGGTGCTTCGCGTTTGAGGGCGTGGATGAAGCCGGGAGTCGGCTCGCCCGCGTGATTAGCGCTGACGTCGTCTACTACGCCGGTTAGGTGTTTGCTGAAGGGTTCTGGGCTCTTAAGCGGAGGTCTAACTGGCGTAGCAGAGGCCGAAGGGGCGTACCCAATGATCGGGCTGCGGCCTCAATCCCAGTCGCTCTACGTCCGCGACGCCGCCCCACCTCAGATGCTCGCACCGCCAACCTCCATGCCCCCACGAAGAGGCGGTTCATCGTCGGGCATACAGGCTCTTCGTGTTCGGGGGCGTGGTGGGCTGGGTGTGGTGGTTCGCCGGGTGGTGGTGGGCACGCGTACCCCGGCGGCGCGGTACGCGGTGCGATGGACGGGTGTTGGGCTGGGTGTCCGCTGAACCACGGCGGGCCAGGCACGATAGCTCCTGCGTTCGGGTCGATGAGGACGTCGTCCTCCTGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCAAGGTGCATTAAGAC # Alternate repeat : GTCAGGAAGCACCTCGCACCTCAAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 8557-8012 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKK01000066.1 Actinomyces ruminicola strain DPC 7226 NODE_66_length_19185_cov_134.364_ID_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8556 37 100.0 35 ..................................... GATACTCTCAAACATTTTAACCTCCTAAGTAACTA 8484 37 100.0 34 ..................................... TAGACGGCCGGGATGCCGTCCTCCTTGACTACCT 8413 37 100.0 35 ..................................... GAAGCTTCTCGGCGAAGTTGTTCATGGTTATGAGG 8341 37 100.0 36 ..................................... CGCCGGCGACGAGGCCGGCAATGAGGCCGACGACGC 8268 37 100.0 37 ..................................... TTACGCCGTGGCCCGGGCCAGCATCATGTCGTCGCGG 8194 37 100.0 35 ..................................... GGGGCGTCCGTCGCGCCACCGGTAGACGGAGGTCG 8122 37 100.0 37 ..................................... GGGCGGTGTCCTGTGTCGTGGTCATGATGTGGTCTCC 8048 37 86.5 0 .....................CA..........G.CG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 98.3 36 GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Left flank : CTCTGCCAGCGCTGTTCGACTGAGGTCGCCCAGGGGGGCGTTTAGGGAGGGCGTTTAGAACGCGGGTTCGCGGTCTGTTACGCCTGTTCGGGGTTTACTACGCCACTTAGGGGTCTGCTGAATGGCTCAGAGGCCTTCAGCAGACCGTTAACTGGCGTTGTTAACGGTGAAGCGGCGTAGTAGACGCGCGGCGGGGCGTGGGTGCTCGAGGTGGTGGCCGACGGGAGTGTCGGTGGTCGATGGCATCGGCTGGGGGCTGGGCGGGAGGAGGTCGTTGCATGTGATCTGTGGTGTTGGTGAGGTGTGTGTGGTGGGTGAGGTGTTGGTGGGGCGTTGTGCTGAGGTCACAATTCGGTCTACGGTACAAAGATTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTGGAGGGGTGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGGG # Right flank : CGGGCGGGGTGCGTGGGGACCGTCAGCCTCGGATCGGCACTATGGTTAGTGCCTGCTTAGTCAGGCGGTTCAGCGGACCCTGTTCACTCCACTGCTCGGTAGAGCGCGTGCGGCACGCCTGTGGCCGCACTGCTTTCAGGACGCCTGGGCCCAGGACCTCGCCCAAAGAATGACAGGGCGCATGCCCGAACTAGCGGCAGCGGACCTGGGTGACGTCCCCGCAGCCATCTACGCCCTGCGGCATCGGGCTGCGGTAAAAGAGGTGCGCAGGTACCTTCGGGACCACCCCGGCGCCGCCGTCGTCGACCTGGGCTGCGGAATGGGCCGACTCGTAGACGATTTGGACGACCCCGCGGCGCGCGTCTACTGCCTGGACCTGCCGGAAGTCGTGAGCCTGCGGCGTGAGTGGCTACCACCTCACCCACGTGAGAGGGAACTGTCCGCCTCCCTGACGGACACCGACTGGATGGCAGACATCGACGCCGACGCCGGAATGGTCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //