Array 1 11795-10473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMA010000033.1 Enterococcus rivorum strain DSM 104544 Ga0454160_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 11794 33 100.0 34 ................................. CCACAAGTCGCCTCTGGGGCTATCTGCGTCTAGG 11727 33 100.0 34 ................................. CCATTTCTCGGGAGCATGTTCAGGGAGGTTTCTT 11660 33 100.0 35 ................................. TATAACAGCTTTGTGTTTGTCCACGAATAATTTTA 11592 33 100.0 36 ................................. ATTTCTAGTTCGGGTTTCATTTTTCCCCTCCTTAAT 11523 33 100.0 34 ................................. CCCTCACACGTATATATGACGTGTACAGGCAGGC 11456 33 100.0 33 ................................. ATTCCAAGTGTCTGAAGGTTTTTTTAATACTTT 11390 33 100.0 37 ................................. GTCAGCTCTAGCTTCGTCTACTAGAGCTGGGCTAGGG 11320 33 100.0 36 ................................. TCACTAGCTTTTATGATTTGTTCTTTCATCCACTCT 11251 33 100.0 35 ................................. TGCTTCGATAACGTCAGTTGAGCCGTCATTATGTT 11183 33 100.0 34 ................................. ACCTACAACAAGCTCTACGATTTAATGTATCAAT 11116 33 100.0 34 ................................. ATACTCTGGCGGTGCTGTGTCGTCTCTGACAGTG 11049 33 100.0 35 ................................. AGATTGTGAGCGTCTTAAATAAGTAAATTGTTCTT 10981 33 100.0 33 ................................. TCAACGTATTCCTGTATTGTGTTGTAAAAAATA 10915 33 97.0 34 ......................T.......... TATCAACAAGCAATTGTTTTTTGACTATAATCGT 10848 33 100.0 34 ................................. TAAATGGGATACTCTTTTTTCTAGTTCTGCGTAT 10781 33 100.0 38 ................................. ATCTATGCGTTACTATTTAAATATACTTAATTCACCAT 10710 33 100.0 38 ................................. TTGGCATGAGTCTACAAGCAAATACGAATGCAAACAAA 10639 33 97.0 34 ......................T.......... TACTATTTGAAAATCTGTAGAATAAAAATCTAGG 10572 33 97.0 34 ......................T.......... TTATTATACGGTGGAAAGTCAAAAAATTCTTTGA 10505 33 75.8 0 ......T...............TAA...ACTT. | ========== ====== ====== ====== ================================= ====================================== ================== 20 33 98.3 35 GTCTAGCTCTGTTTAGAGCTAGGGGATTGAAAT # Left flank : GTCCACCCAAGTGGGAAGCCATTTTTTAACAAAAGTGAAGTAGATTTACAGAATGCAAAGAAAAAAGTTTATTTAGAAACTAATTTTAGTCAAGATTATGGCGATCGCATTGCTATGAGAATGGTCAAAAAGACAGAAGAGTTAGGAAAAAGAAGAGAATCTAGCCGAATTAAGCAGGAGATTAGCCAGTTAGGGAAGGAACAAATGGGCGCGAAACCGATTGCTAAATCATTGGAAACCATGATAAAATGAAATAGAAAGAGCTTTTCAGATTGAAGATTTGTTGAAAAAGGGTCAAGAGATTTTTAAGTATGAAATAAGTAGAATGAATCTAGAAAAATAAGTGCGAACCCCAAGTGCCCATAAAATCCCCAGGAGATTCGCACCAAAAATTCAAGAGAAACGATGGGAAAACAGTCTGTTTTCTCATTAAAATCTAATTTATTGATAATCAAAATGATAAAAAAGGAAAAAGGTTAAGGAAATAGACCTTTTTCACT # Right flank : CTATATTTCCAATACCTATTGAATATAGCTAGTACTTAGAATACAGAAAAAATGTTTAAAAATGATTGGAGATTGAATTCTTCATCTCTAGATTAAAAAAAATTTATTAGATATATCTATTGATTTTGAAGAATAATGATAGGATAAAGGTGTTTAAAAAAATCAATGAAATGTTAAGAGGAAAATCAAATAATAAATGACGAAGGGATAGTATTAGCGAAAAAGCTTGATGCTGTTCTGTTTTTTTAGTTACCCAAGACAGATGCGTTGCTATATTTATAAAAAATAAAATGTTATTAATGTAAAAAATTCAGAAAAGATGTTGTTTAAAAAAGGCCGATTGGCTTTAGTCTAGGTACTCTTAATTTAAAGTGATTTTTTACAAATTTTAAATAAATATTATTTTAAGTAAAAAAAGAAAATAAATAATTTTATAATTAACGTTGTGCATCTATGTAATTATTGATATGATTAAATCAGAATCATTTTCAATGTTACAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1829-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMA010000052.1 Enterococcus rivorum strain DSM 104544 Ga0454160_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1828 33 100.0 34 ................................. TTTGCTGAATAATGATGATATTCAATACCTAGTC 1761 33 100.0 35 ................................. CTCTCTAGTGTACTTATAAGATGTTGCAGCGTTTT 1693 33 100.0 35 ................................. TATTTTTGGGGGATTTGCCAATCGATGATAACCAT 1625 33 100.0 35 ................................. ATCCCAAATATATGAAGCAAATTCTTGGAATAAGT 1557 33 100.0 34 ................................. ATCTAGGATTGCCCGCCAATGCCTGCAAAAAACA 1490 33 100.0 33 ................................. TATCCCTAAATTAAACATACTATTACCTGTTTT 1424 33 100.0 34 ................................. GTATTCCTCACGCTTTCTTTCCGGAGATTGTGGA 1357 33 100.0 35 ................................. TCTATTAATCCTGCTGGTTGGCAAATAGGTGATTT 1289 33 100.0 34 ................................. AATGTAATGTCAGTCGTTTTATAGTAAGCATCTT 1222 33 100.0 34 ................................. CTTTACAAAAAGATGCTCTCTATCTTATATTTAT 1155 33 100.0 33 ................................. TTACCTAGATTTTCTAGTCCCTCAAATTAGTAT 1089 33 100.0 34 ................................. ATTTCATTTCCCTCCACGCTACGCTGCCGACAAT 1022 33 100.0 34 ................................. AAAAACTTCTATTAAAAGAAGCTGAATCTCATTT 955 33 100.0 36 ................................. AAATTGACGATGAAAAGAAACAGAAAGATATCGATG 886 33 100.0 33 ................................. GAGTAATACTTAATAGAATGTTTTTTTAGTATT 820 33 100.0 35 ................................. TTGGATGCGCTTGGAAACATGGCCAACGATAAAGA 752 33 100.0 36 ................................. CATTCATCGCCGCCGACAAGCTCTTCTTTAGATTTG 683 33 100.0 36 ................................. ACAAAAACAACAAAAACCTAAATTAAATAAGAGTCG 614 33 100.0 34 ................................. ATACTCAATAGCAAGAGGGAAAAGTACAATTTTT 547 33 81.8 0 .......................AA...ACTT. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.1 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : ATGGATATCCACCTTTTTTATGGAAGTAGGTGAGTGTTATTCTAGTTTTAATTACCTATGATGTGGCGACAAGTTCTGAAAATGGAACAAAACGATTAAGAAAAGTAGCAAAAAAATGTCAAGATTACGGTCAAAGAGTGCAAAATTCTGTTTTTGAATGTATAGTAGACGCAACCGAGTTAACAAAATTGAAAAAAGAATTAATTGATTTAATTGATGAAGAACAAGATAGTTTAAGAATTTATCGGTTAGGCAATAACTATCAGAATAAAGTAGAGCATGTTGGAGCGAAAGAAAGCTTTAATGTAGAAGACCCTTTAATATTTTAATATGATTTATTTGGTGCGAACCCTAAGTGCACATAAAATCTCTAGGGGATTCGCACCAGAATTTGAACACTTTTTAAAGAAAAAAGGTCTTTTTTCTCATTTAATTTTAATAGAAAGGTTCTTTTAAAGTGAAAATAGGATAAAAAGTACTTATTTTGAGCTATTTTCACA # Right flank : CTATATTTCCAATACTTATTGAATATAGCTAGTACTTAGAATGCAGAAAAAATGTTTAAAAATGATTGGAGATTGAATTCTTCATCTCTAGATTAAAAAAAATTATTAGATATATCTATTGATTTTGAAGAATAATGATATGATAAAGGTGTTTAAAAAAAACAATGAAATGTTAAGAGGAAAATCAAATAATAAATGACGAAGGGATAGTATTAGCTAAAAAGGTTGATGCTGTTCCGTTTTTTTCAGTTACCCAAGACAGACACATTGATTTATTTATAAAAAGTAAAATGGTATCAAAGTAAAAAATTCAGAAAAGATGTTTTGAAAAAAGGCAGATTGGCTTTAGTCTAGGTACTCTTGATTTAAAGTGATCTTTTACAAATTTTTAATAAATATTATTTTAAATAAAAAAATATAATAAATAATTTTATAATTAACGTTGTGCATCTATGTAATTATTGATATGATTAAATCAGAATCATTTTCAATGTTACATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3803-3443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMA010000066.1 Enterococcus rivorum strain DSM 104544 Ga0454160_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3802 30 100.0 36 .............................. CTGGCAAAGATGAGTCCAAGTTGAGTTCAGAGGGTG 3736 30 100.0 36 .............................. ATCGTTGCAAGAGGATGTAAACAGACAGCAAGCAAC 3670 30 100.0 36 .............................. AAAGTATCATTGCCAATTGTGACAACTTTATTTTTC 3604 30 100.0 36 .............................. CACGTCCATTACGAGCTACAAAAAGACGGTAAACAT 3538 30 100.0 36 .............................. TTAGTAACAATTGTTAAAGCTTTGCCGGAAAGTCCT 3472 30 93.3 0 ........................T...G. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTTTAATCTAAGTACTGTGAAATGTAAAT # Left flank : TTTGATAATAATAGTCAAAATCGTCTCTGTTTTCTATAAATAGTAGTTTATTGTCCCACTCTCTTTCTTGTTTCTGTTCAATAGCTCAAAAAATAAGGAATTGCGAGAAAATATACTCTTGTTAGAAACAAGTTGAAGTGCTCAAAAGGATTAGGAAAGAAGGCGTAGGATTTCATCTACTGTATATTGAGGATTACCAATAGAAAATGTGGTGATCCCACTTCTTGAACTATAAGAATTAAGCATTTTTTTACAGTATGTTGATTATTATTTATGATTTTGACTCAATCTAGATGTTTTTTTGTGAAGAAAATGAAATGGAAATCTGTCGAAGTCCAATAGCCCAAAATAATGGGGAGATCGACAGATGCAAAAAAAGCCAGAGAAATAAGTTTTTTTAAGGAATAGGGAATGTTTACTAGTAAAATGGAGTAAAAAAATAGACATCGACAGATTCGGCTTCTGTAAGGTATGATAGAAGTATCTTTTTTGAGGTACCT # Right flank : TTGGACAGCAGAGGAGTTTTCCTTATATATATATTAATTATTTTAGACCATAAAATCTTAAATTTAAAAATTATTTTGGAAATCTCCAATAAATATAATTTTAAATAAAAAAATATAATAAAGAATTTTATACTTAGCATTGTGCACCTATGTAATTATTGATATGATTGAATCAGAATCATTTTCAATGTTACATAGTTTTTATTTTATTATTGGAGGAAAAAGAATGGCACAAATCAAATTATCACCAGAAGAATTAGAAACATCTGCAACAAAATACACGCAAGGGTCAGAAGAAATCTTAACGGTTTTATCAAATCTTGAGAGAGAACAGGATGCTATCCGTTCAAATTGGGAAGGTAGCGGATTTGAAAGCTTTGACAATCAATTTGTAGAATTACAACCGAAGATTCGTGAATTTGGTGAATTGTTAGAACAAATCAACCAACAGCTACGTTCAGTGGCGCAAATTATGCGTGATACGGATAACGATATTTCAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAAGTACTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 95644-96539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMA010000009.1 Enterococcus rivorum strain DSM 104544 Ga0454160_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 95644 36 97.2 30 ......................A............. TTTTCAATACGAGAGTAAGTCGATCTATTT 95710 36 100.0 30 .................................... AATCTTTCTGCTAACATTGTGTATGTTAGA 95776 36 100.0 30 .................................... CAATTAACCAAATGGATCAATACCGCTACT 95842 36 100.0 30 .................................... ATATCGATAAGTCACATGTTTTCCTTCAAG 95908 36 100.0 30 .................................... TGAGCGTGGAACGTCTTAAATCGATTGTTA 95974 36 97.2 30 T................................... CCATTGTAGGTACGTTTGTACGTCCAAGTA 96040 36 100.0 30 .................................... GTAGTCAGCGAAGAATGATTTTATGCTGAT 96106 36 100.0 31 .................................... TAGCAGATGTTCCTTGTGGTTGATTGGTTAG 96173 36 100.0 30 .................................... TAAGTAATACTTCACCAGATGATAAAAAGA 96239 36 100.0 30 .................................... GTATGACTTGATATACCTGCTCATCATAAT 96305 36 100.0 30 .................................... TACGCGTGTTATTTGTGTCTTTTCTGCTAT 96371 36 100.0 30 .................................... TCGTCAATTGATACTTTTGGCTGTCTTACT 96437 36 100.0 31 .................................... CTCAAATCAAAATAAATCGTACTGAATTCCC 96504 36 72.2 0 A.....A..GC......AA..G.....A.T.C.... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 97.6 30 GTTTGGGAACTATTCAATTTAACATGACTCTAAAAC # Left flank : TAACCACGATATCCCGAGGCAATTGATGATTAAAAACATCCCCTATCTCGGTTAAACTTATGGTGCTATTGGTTTTGAAATTAGCAATCTGTCCTCTAGCATGTGTTCCCGCATCCGTTCGACCAGAACCCACGATTTCAGTAGTTGTTCCTAACAGCTTTGTCAGGATTGCTTCGATTTTTCCTTGTATCGTTTTATCAGAATTTCCCAGTCGTTGCCAACCTAGATATCTCCCACCATCATATTCGATGGTTAGTTTTATATTTCTCATCTGTTTGATTCACGCTCCGATTCTCTCTGTTATTCATTCAATAACTTGCTCCGATTTTCTAAAAAATAGATCTTCGTCTCATGACACTTATCATAGCACATCGTTGCTATTTCTTTTATAGATAATGTTGGAAAATCATTTTCGATATAACAAAAAACTGTATCCAAAATTTAGAATACAGTTTTTTAAGACTAATACTTTTATTCGCAACAATAACGAAACTAACTAA # Right flank : CCCATTCAGGTGACTAGCCCTTCAATTTCAAATGCTATTCTTTTTATTTGACACTGCATGTTATCTCTTATTTTTTGAAATTATAGCATAATGTGGCTCAAAAAGAAATCGCTATCTAAGTAGTAATGTGGTATATTTTCTAAAATATATTGACTACTTTCAATAATTAGAACTGTTTGATTGTTCAAATCAATTTGCTCCATTATATATTTATATTCTTGGTTTGTTAATAAAATATTTAAGTGCGTGAAAATCAGTAACTTTTCTCCAGCTAAATCATTTAACGTATTAATTAGCAACTGTATTTTTTCAAAAATACTTGTTTGCATTTTCTGGTCAATCGATAACCCAATCATTTTAAACAGCTCTTTGTAATTTAATTCATCTTTATACATTAAATCCAAATCATTATTTTCATCAATTACTTGGATCAATTTATAAATCATATTACGATAATCATGCTCTATTTCGTGTTTTTTATCAATTTCATAACCAATTTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGGAACTATTCAATTTAACATGACTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //