Array 1 1172-1382 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNX01000008.1 Salmonella enterica strain BCW_1562 NODE_8_length_138659_cov_3.53762, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1172 29 96.6 32 ........T.................... CCGGTGGTTGTTACGCTCTCTGCGCATTTGAA 1233 29 100.0 32 ............................. TATTCAGATATAACCAGCACAAGAAGTTTTAA 1294 29 100.0 32 ............................. ATCACGCGCCCGAAACCTACACCGGCTTATTC 1355 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAAATTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT # Right flank : GTTGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAGACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATGACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCAATTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17552-19085 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNX01000008.1 Salmonella enterica strain BCW_1562 NODE_8_length_138659_cov_3.53762, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 17552 29 100.0 32 ............................. CCACAGGCAGCACAACGATTTTTCAAACCGCG 17613 29 100.0 32 ............................. TCAATCCTTCCCAATTGGTGACTTATGTCTAT 17674 29 100.0 32 ............................. GGGGAAAGACTTTCATCCCATATGAAGCAGAC 17735 29 100.0 32 ............................. GTGATATATTCTCAGGCACGCGTAGAGTCTTA 17796 29 100.0 32 ............................. GTACTGATTTCCGGTGACGGTATATAAAACGG 17857 29 100.0 32 ............................. ACCCGCATGATGTCGCACGTTTTTGCAGAATT 17918 29 96.6 32 ............T................ ACGCCAGCAGCGCTGGCAGAAATTCAGGAACT 17979 29 100.0 32 ............................. CCCCCAGCGAATAAACGCGGCCTCGATTGCCA 18040 29 100.0 32 ............................. AACATGAGAACCGTTATCATATTCTTTAGAGA 18101 29 100.0 32 ............................. CCAGCACATTGACCAAAACGCCCAGGATCGCC 18162 29 100.0 32 ............................. CAATCAAATGGGGTGAGCCTGGTGGTCGATGT 18223 29 100.0 32 ............................. ATAGTGGTCGTTCGTGTTAATCAGGGGAGCGA 18284 29 100.0 32 ............................. AAAACCCCAGCCACCGACGCTTTCCTGGCTGA 18345 29 100.0 32 ............................. ATGTGTACAAACCGGACAGGAGCACTGATGCT 18406 29 100.0 32 ............................. CAGACAATAGCGGGGGCGGCGCTTCGTCCGCA 18467 29 100.0 32 ............................. CGCAAACAGTGCGTAATTCGCAAAATTCACGC 18528 29 96.6 32 ............................T GGCGCGCTTACGCGCTCAGCAGAAGTGGGGGC 18589 29 100.0 32 ............................. AATGCTTATAATTCTGCCGGTCTCTCAAGTTA 18650 29 100.0 32 ............................. TCTGCTGACAGCGCCTTATTGTTCACCTTGCG 18711 29 100.0 32 ............................. TTCCGGGGCCGTCGTGTGAAGGGGTTAACGCG 18772 29 96.6 32 ............................T GCAGCCAGGGCGCGGATCTCGTGGAACGTGGG 18833 29 100.0 32 ............................. CAGGCCGGTAGCGTAGAAGTTAGCGGCATCAG 18894 29 100.0 32 ............................. TTGTGTGCTTGAGTGCGACGATCAGCACAGTA 18955 29 96.6 73 ...........................A. CCAAATTGGTACTGTCGGCGGTATCCAGCGGGGATAAACCGCGTCTTGACGATCCATTCTGGCAGTCATTCTA 19057 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ========================================================================= ================== 25 29 99.2 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTTCACCAGCAGATCAGGACGCTTTTCCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGTCTTAAGTCGTGCCAGCTATTGCCGTTCGGGAAAGATGCATTTTTCACGCGTTGCTGGTATCCATCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGATAGGACGGATTGCGGCCCGGATTGGTGTTGGCGGCGATACCATAATGGCGCGCAATCGCCAATGCCCGATCGCGGGTCAGTGTACGTACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTATCGCCAACAATAAGGTTATCGAGATTAATGACCAACAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //