Array 1 4499514-4500602 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP009016.1 Xanthomonas citri pv. citri strain GD3 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
   4499514	    31	 100.0	    37	...............................	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG	
   4499582	    31	 100.0	    35	...............................	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG  	
   4499648	    31	 100.0	    34	...............................	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG   	
   4499713	    31	 100.0	    35	...............................	CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT  	
   4499779	    31	 100.0	    36	...............................	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 	
   4499846	    31	 100.0	    36	...............................	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 	
   4499913	    31	 100.0	    34	...............................	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC   	
   4499978	    31	 100.0	    36	...............................	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 	
   4500045	    31	 100.0	    37	...............................	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC	
   4500113	    31	 100.0	    35	...............................	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA  	
   4500179	    31	 100.0	    34	...............................	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA   	
   4500244	    31	 100.0	    34	...............................	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG   	
   4500309	    31	 100.0	    35	...............................	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC  	
   4500375	    31	 100.0	    34	...............................	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG   	
   4500440	    31	 100.0	    34	...............................	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT   	
   4500505	    31	  93.5	    36	T...........T..................	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 	
   4500572	    31	  96.8	     0	.G.............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
        17	    31	  99.4	    35	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   GACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAAAAAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG
# Right flank :  CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//