Array 1 393064-393992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFJ010000001.1 Pectobacterium punjabense strain IPO:3715 SV1490b 000000F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393064 28 100.0 32 ............................ GCACTGGCGGTGGCGTTTCGCAATACCACTAA 393124 28 100.0 32 ............................ GTCAATGGCAAAACGTTGACAACCGACATTAC 393184 28 100.0 32 ............................ TATCACGGCGTTGAGTATCAACGATAACGGAA 393244 28 100.0 32 ............................ AATATCGCGAGATGGAACGAGAGAGCGTTTTG 393304 28 100.0 32 ............................ GGGTACTGGCTGACATCTCAAGCGGATCGGAT 393364 28 100.0 32 ............................ ACCTGCGTTTTATCTGCACCATCCCATTTAGC 393424 28 100.0 33 ............................ ATTCGAGCAGCTTATCAGCGTAGAAGGTATTCC 393485 28 100.0 32 ............................ GCGAATTGCTGCCGTTCAGTCAGTTAGTTGAT 393545 28 100.0 32 ............................ ATTGATTTCCCAGAGAAAGCGCGAAAAATTGG 393605 28 100.0 32 ............................ TCGACGACAGACCCCGTCAAATTAATATCGCC 393665 28 100.0 32 ............................ CACACGGAGTGCGTCAAGTACATTGCCAAACG 393725 28 100.0 32 ............................ TTCTGGCCCCTTCCTTTGGGGCGCTATCCAGG 393785 28 100.0 32 ............................ CACGCCGAGATTGTCGCGGGCGGTCGGTTTGT 393845 28 100.0 32 ............................ CATTTATCGGGGTCATACTGAATGCCGGTAAT 393905 28 100.0 32 ............................ AGAGCAATAAAGCGTTAATGCTGTTGAACCGT 393965 28 85.7 0 .............C...T..TA...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTGAAGGCGTTGTCCATATGTATTTTCTGCCGCGATCGATAATAGGTTTTGATACCAGCGAAATTAATCGCTGGCTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAAAGAAAACCAGCCTATCACAGAGAGCTTGGGAAAATGATGGCTGCAAAAAATATTACCCAGATGTAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGAGCTACA # Right flank : ATAGAAGAACGTAGCTGTGCTGGGTAGTAAAAGAGGCTTTTAGACCGAAGTGGTATCCATTTCTCGCCAGTTGAGCCAGATTCGCATATCAAATTCCAACTGATGGTAGTCTGGGTCCATATGGCAACAGAGCTGGTAAAACGCTTTGTTATGGTCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATGCGTAGAAAATCTTCCGGGCCGTCACGAAATAACGTCGCTATTCTAATTTCGTTGTTGGACTTTAATTTCCCGCCCTGCACGCGTGCCACAAACGTATTGGTCCCGAGCGTCCCTTTTATTGGATTCTGTTTATTGTCGTAAAGCACCTTGGATATTGCCGGAGCATTCTTCAAATATCGCTGCTTCAATTCTGCGACAAATTGATAGAGCGATTTATCACTCTGGATGTGATGGCGGTCAGGGTATCTTTTTTCCAGCCACAGGCCGAGCTTGCCTTGATCAACGAGGGTTTGCGCTTGCGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 406175-406972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFJ010000001.1 Pectobacterium punjabense strain IPO:3715 SV1490b 000000F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 406175 28 100.0 32 ............................ AGTTTTGCGCGGCTTAGGCACGCGATAATTGG 406235 28 100.0 32 ............................ AGTGTGAGTGCCAAGGAAGTCACAAATGTGAC 406295 28 100.0 32 ............................ TGACAATATCAGCAGGCAGAAGAGTGTCAGCC 406355 28 100.0 32 ............................ CTCTATTTCCTCCTCTGCTGCCGCCATTTTGC 406415 28 100.0 32 ............................ ATTTCGTGAAGCCAGCCGGAATTTACATCTGC 406475 28 100.0 32 ............................ ATTACGCGGAATAACTTCCCGTCCACCCATCC 406535 28 100.0 32 ............................ CGAACAGCGATCGAATGTTAGTACCGGAAACC 406595 28 100.0 32 ............................ ACAGGATCGCACACTAGCGCATCGCCCGACGC 406655 28 100.0 32 ............................ AGAAACGGCGCTACCAGCGCCGCTAAAGAGAT 406715 28 100.0 32 ............................ TTACGTTCAGGTGTAAGAGAAGCATCAGAAAG 406775 28 100.0 32 ............................ ATCTTGGCGAACGACACCGACCGGGCTTCTTT 406835 28 100.0 32 ............................ ATCATCTGTTTAATTGCACCAACTATCATCTT 406895 28 89.3 22 A..........C.C.............. GGCAGGGGTGGGCCGGAAAAAG Deletion [406945] 406945 28 67.9 0 ............GC......G.ATTCTC | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.9 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGATGAAAATCACATATAAAGATTATTCACTGCATCAAAAAACACGCAATAATTTCAATATGAAAAATAGATATTTCAATTTTAAAAATAAAACACGGCATATATCACATAATAAATAACAAAAAACGGACTAATAAGCCCTGTTCATTTTGCACGCAATTTTGTTAACAACGTCATGGATATGTCGGAAAATCCTTTCCCGGTAGCAGTTGTGATTTATAGACTCAATCAGGCAAGGGGCTTTAGCGTCAAGGTGAGAAATAAGATCGGTTTTTCGTGTATGTAGCCCATAGCGTACGGCAAAAGGCTCCTACTTAAGCTATTTCTCTTTTTATCGCTAAAGCGCGGAAACCATCATCACGTAGTAACAACCCTTTTTTAACGGATACTCGTAACTTATTGATTTTTAATTTTGATTACGCGCTACGATAAAAAGGGTTTTTCAGGAGAAATGGTTTATTTTCTTTTAAAATTAGGCAACTACCGTAAAATAGGAACA # Right flank : CGGGATAAATCGCTGGCGTCGCCTATTGGGCGTTATTCCCCATTAAGCGTGACGACCAGCGAGCGGCTCCCGCCGTGGTTGCGGAGTTCGCACAGGTAAACGCCCTGCCAGGTGCCGATGTTCAGGCGCCCATTGGTAATGGGGATCGTCAGACTGTTACCCAACAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCGTAAACATGGCGGTAGTACGGCTCATCCTCAGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTTTCATTCATCGTTAGTGCCGCCGAGGTATGTTTGATGAACACATGCACCAATCCAACGTTTATCTGGCGCAGCGCAACAACCTGCGCCAGTATTTCGTCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCGCAGGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //