Array 1 20387-20058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEZ010000063.1 Pseudoalteromonas sp. SG43-6 NODE_63_length_23453_cov_8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20386 28 100.0 32 ............................ TAGAATCATATTCATCACTGCTGAGCAAGCTA 20326 28 100.0 32 ............................ TTTAAAAATACGTTTTGTTGATGATTCTGGCC 20266 28 100.0 33 ............................ TCATAAACCCTATGAGTTGATGATTTTATTCTC 20205 28 100.0 32 ............................ GTGAGTAACATTTGCCATAATTTCTTTAATGC 20145 28 100.0 32 ............................ ACTAAACCTGCGCCCACTTCAAAAGCATTCTT 20085 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : TCGTTTAGAAGAACTTGAAGCGTTACCATGGCGACGAGGTTTAGGAGACTTCACCTTAGTCACTAAGGTAACTCAAATTCCAAGTACCAATGAGTTTTGCCTTGTAAAGCGAGTTCACGTGAAAAGCAACGCTGACCAACTGCGTCGCCGAGCAATGAAACGCCATGACCTCACTTACGAAGAAGCGGTGGAACGCATTCCCAAAGATGTTGAAAAGCAGTTGGAACTGCCCTTTGTCAGAATCAAGAGTAAATCAACGGGTGATCAACAATTTCGATTGTTTATCAAACAGACTTTCACAGCATCAAAAGATGAGGCGGCGAACTTCTCCAAATACGGATTAAGCGCCACCAGCACCTTGCCTTGGTTTTAACCCTTTTTTTAGGCACAATGCCAAACCCTTATAAATAGGGGCTTGGCATTTCTAGTTAAAAAAGGGTATTTTGGTCAAAATTAAAAAAGCTCTTTAAAAATCAGATGTTTAATGCTAAATTATTCTA # Right flank : ACGAGGGACCGAAACGACATATCTAGCAAAAAGTGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGACGGATTGTTAACACCGCAGTTTGTTTGAAGTACTGTCGCGCCAGCAAGCTTAGCGCCTACGGCACAGGCAGCTTTGGTGGCGATGGACCGAAAGGGCATACCTAGCAAAGAGTGCAGCCTGAGGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGTAATGACCGATGTAACCAAGCTCTATGGATGGATTGTTAACACCGCGGTTTGTTTGAAGTACTGTCGCGCAAGCAAGCTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTTGTATATTTGTGCGCCAGCAAACTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTTGTATATTTGTGCGCCAGCAAACTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51822-51365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEZ010000015.1 Pseudoalteromonas sp. SG43-6 NODE_15_length_90970_cov_8.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================ ================== 51821 28 100.0 32 ............................ TCGCAATTATTAATCCAAAAGGTAGCGGGTGG 51761 28 100.0 32 ............................ CATTCAACCTCGCCAGTAGCTAAGTCAGGTTC 51701 28 100.0 32 ............................ ACGGACAACCAGTATCAGCCCTGCAGCTTCGA 51641 28 89.3 220 .........................GTG ACGAGGGACCGACAAAAATATCGGGAATATTTTGGAACTGCGAAGCAGACCTTTATGGCGAAGGGCAGGACGCCTAAAGTAAACGACATATCTAGTAAAGAGTGCAGCGCGAAGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTCAAACGCCGAT 51393 28 64.3 0 ....TT.TT...G.CA.........CGC | A [51374] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================ ================== 5 28 90.7 79 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGCACACAGAAAGTATGTTTGATTTTTGATCTAAAGCAAATAGTTCAGGCAGAAAGGGAAGTCTGTTTGTGAGCCTCTCAGTTAATTTAAGATTAGCAAACTCAAAGTGAATACCTTACATAGTTAAACTCACCTTCATGTAAGAATAGACCCCGCACCATGTTTAGCTCAAAACAACGTACACATTTTTTCAAACAATGTAAATATGTACTTGGTGCTGCTGATAATCCTTATCTAGATTTGTTCAGCGGTTCAACAGAACAAGTGCATCGCAAATTCTTTGCGTTTAGTGATTTAAAAGATAAACCTATTGATGGTAAGTTTGATTCTTATGGATTAAGTAAAGTTGCCACGATACCTTGGTTTTAACCCTTTATTTTTTCTCTTTAAAATTTTCTATAAAAACAATGGGTTATAACATATCGTTTTTGATAAGGTAAAATAGTAATATTTAACCTAATGGCTTGTTGTAACTTATTTTTATGCTGATATTCTATA # Right flank : CTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGAAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGCTCTTCTACAAGCCACACTACGGATGCTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGCTACAAATTATTTCATGGTTTCTCATTTACCCTCACTGTCTGTTTTTTGTGCAACAAATCGTTAAGTTCTAGGAAAATGATTTGCAGAGCTGCATTTGTATGCGCTGAAGAACTGTTTTTAGCGAGTTCGGGCGATTTCTGATTGCTATTTATATTACATTTTGAGATATTATTTATAATATAATATTAACAGGAAATAGTAACAGATGACTCTGCCCAGTTCTCAATCTGCAAATGCAATCCGTATGCTTGCTGTCGATGCCGTTCAAAAAGCTAATTCAGGTCACCCAGGTGCACCAATGGGGATGGCCGATATTGCTGCTGTTCTTTGGCAAAACTTCCACCGCCACAATCCATTGAATCCTGA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //