Array 1 57520-57038 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211063.1 Meiothermus cerbereus DSM 11376 Q355DRAFT_scaffold00016.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 57519 35 100.0 38 ................................... AAGTAACAGGAACTATACTGCAAGTAGATATATATACG 57446 35 100.0 39 ................................... TAGCTGCTCTCTATTCAGTAGCGCTTTCATCAGCGTCTC 57372 35 100.0 40 ................................... TCTGTTCGGGTGAATATGTAGACATCCTGCTCATTCCTGA 57297 35 100.0 42 ................................... TGTGACTCCTAGCGGCGGTTGAGGGCCCGCCAGGCCAAGTAA 57220 35 100.0 41 ................................... AATGGGATTTGGCTTGATCGCACAGTGATCAGAACTCATGG 57144 35 100.0 37 ................................... TCAAAGTTTTTTGGGCTCACCACAGTGGAGAAGACGT 57072 35 68.6 0 TA.T.....GC.T.......CG..........GGG | ========== ====== ====== ====== =================================== ========================================== ================== 7 35 95.5 40 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : GCTGCTGCAAAAAAAGCTGGAGCTTTCTCAGGACAGCGTTCGTATCTACCCCATTGGGGGTACGGTAGAGGTGTTGGGCGTAGGCCGAATCACCGAAGACCCCGGCTACCTTATTCTCTAGCCCGCGTTAATGCTGCCGTTACATGCCCAAAACCCCCCAAAAATGCTATCGCAACCGTACCCCCTTGCCCAAAAAACACCACACCAGCACCCACCAGAACAGCATGGAAGCAATTTCCAAAAATAACCCATTATGTTTTGCGCAAAATGCTATAATGCCTATGTCGGCCATTTCGACAGCGGTTCTTGAAAGCCTAGATGTGCGATGTAAATCGCAAACCCACCGCACAAAAAATCTAAAAGTGTGGGTTTGTAAGCATCCATCGCAAAAAACGCCACTTTTTACCCACTTATCCACAGGCTGCCTGTGGATAACTCGGTTTTCTCATAAATACCCCCGCTAAGAGCCCTTTACAGGACGGCGATTAACGGGGTATGCT # Right flank : TTTGGTAGATTGGTGGTGTGCAAGAGGGAGCCAACACTGTTTTGATACTGAGCGTGGGGCAGACCATCGAGCCCCTCGAGTTTGCCTTGGCCGAACATACCCCGCAGGGGGTGGTGTTTGTGGCCAGCCAGGGAACGCAGGCGGTGGCGGGGGAGCTGGTGCGGCGCTATGGGAACTCGCTGCGTTTTCATACCTTGCTGCTCGACGACCCCGAAGACCTGGGCGAGGTGTTTCGCAAAGGGCGCGAGGCCCTGCAAAAGGCGCTGGAGTGGGAGGCCCGCACGATTGTGGCTGATATAACCGGGGGAACCAAAACCATGTCGGCGGGGATGGTACTGGCCCTCACCGGACAGGGGGTAACCTTTAGCTATGTGGGCGGGGAGCAGCGCGACCAGATGGGGCGGGTTAAGAGCGGCAGTGAGCGGCTGCGCGTGCTGGAAGACCCTACCTTTCGCTATGGCCTGCGCGAGTGGGAGGGGTTTCGGCGGGCCTGGAACCAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 153748-154444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVI01000004.1 Meiothermus cerbereus DSM 11376 Q355DRAFT_scaffold00003.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 153748 35 100.0 42 ................................... ATAATATAGTGGGCCTCGAATCCCTCCGTCACATGAATAATA 153825 35 100.0 36 ................................... ACTTCAGGTACTTTATTAGGCTTGCAATCATTACAG 153896 35 100.0 38 ................................... GAGGCCCCTGATACGTCCCCAGGGGTGGGATTTACAAA 153969 35 100.0 39 ................................... CTGAAGTCGAATGTACGTCATGTTATTCCTCCTCTATTT 154043 35 100.0 37 ................................... AGCACCACGATGTCATCCCCGTCGAAGTCCCCGCCGA 154115 35 100.0 39 ................................... CAACCAATTGATTCCAAAATATGGTTGATTTCCTCCGGT 154189 35 100.0 41 ................................... AAGGGCGGTAGAGAAAAAGCCCTGGGCCGCCCTCTATATCC 154265 35 100.0 38 ................................... TACAGGTACCGATGGGCTTTGGTATGCCCTTCGAGGGT 154338 35 100.0 37 ................................... CATACCAACAGGTAGGGTAACGCTGTGCGATAATCGT 154410 35 97.1 0 ..................................G | ========== ====== ====== ====== =================================== ========================================== ================== 10 35 99.7 39 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : AGCCAAGATTGTACCACCATATATTCTGCTAAAGGTCGGACATCGAACAAAACCGGTATTGTAGTGTCTTCTTTGACGAACCGAAGGTTCTGGCAGGACAGTTTAGAACCCGCCTTGACCCATTCGTTACAAAAAGCGTTACATGCTATTTTGTACCCAAAAATGCTATCGCAACCGTACCCCCTTGCCCAAAAAACACCACACCAGCACCCACCAGAACGGCATGGAAGCAATTTCCAAAAATAACCCATTATGTTTTGCGCAAAATGCTATAATGCCTATGTCGGCCATTTCGACAGCGGTTCTTGAAAGCCTAGATGTGCGATGTAAATCGCAAACCCACCGCACAAAAAATCTAAAAGTGTGGGTTTGTAAGCATCCATCGCAAAAAACGCCACTTTTTACCCACTTATCCACAGGCTGCCTGTGGATAACTCGGTTTTCTCATAAATACCCCCTAATAAGAGCCCTTTACAGGACGGCGATTAACGGGGTATGCT # Right flank : GCACGCTGCTGGTTTTGGGGTTTGTGAAGGTATCATCGAAGCCGATGAACGCGGTTTTGCGCCAGGCGGTGATAAAAGCCCACGGGCAGCTCGAGCGTCGCACTGCGGCTTATCTGGGCGAACGCCGTGTGCGGGTGAGCTGTGGTAAGGGCTGCTTTGCTTGCTGCTCGGCCTGGGTGGTGGTGGGGCTGGCCGAGGCCGAATATCTGCGCGAAGCGCTCGAGGCTTCTCAGCCAGAGGTGCTTGCCCGTGTCGAAGCTGAAGGCCCCAAAAGGCTCAGGCGCCTGGCTCAGCAAAAAAACCGGCCCGATTTTCCCACCCTGTATTTTCTGGAAGATAACCCCTGCCCGCTGCTTACACCAGAGGGTGCTTGCTCGGCGCATGCCTACCGCCCCCTGGCCTGCCGCGGGGTGCTGACCAACCTTTCGCCCCGCTACTGTGCCCCTGGGGTGGTGCCTGCGCTGCGGGGACGAGAGAAAGACACCTACCTGGGCCAGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 35161-35372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVI01000032.1 Meiothermus cerbereus DSM 11376 Q355DRAFT_scaffold00029.29_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35161 29 100.0 32 ............................. GCACGCAAGGCGGCTACGCCATTTGTTCGTTG 35222 29 100.0 32 ............................. AAACCCTGTCGCAATGGAAGGCCAAGGTCATC 35283 29 100.0 32 ............................. GATTCCTCAACGGCGACCGAAGCCCCTCTACC 35344 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCTTCGACGCGCTCGAGACCCCCGACCCCTACGCCGCCGACCCTGCGGCCCCAGGTGAGCTGTGGGACCCCGAGGGCCCGGTTCCGGGCGGGATAAGCTATGGTAGTGATCGTTCTGGAGAAGGTGCCGAAGACCCTGAGGGGTGAGCTTTCACGCTGGATGCTCGAGGTGAGCACGGGCGTGTTTGTGGGCAGCGTTTCGGCACTGGTGCGCGATTTGCTCTGGGAAAAGTGCATTGCCAAGAAAAGCTCGGGCCGCTGCTGCTTGCTCTACCGCACCAACAACGAACAGGGCTTTGCTATTCGAACCCATGGCGATACCACCCGCACCCTGATAGACTTTGATGGCCTGACCCTGGTAGCAGTGAAAAATGCCGAATGGGAGCGTATGCATCACAAGCGAAGCAGAAAAAGCAAACCAGGGGCGAATCTTGACAAAGTAACTCGGGATTCTGACACTTCCGAGGGGTCTAGCAGCTAATTTTGCTGTTAGAATCAAGT # Right flank : CTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 153579-153755 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211062.1 Meiothermus cerbereus DSM 11376 Q355DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 153579 37 100.0 35 ..................................... ACGGGCCTAACGCCCAGAACATGAACGGGGAGCGC 153651 37 100.0 32 ..................................... TCTTGCTGCGAACTCTGGGACGCTTATGACTG 153720 36 81.1 0 ........................C-.CA.CCA.... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 93.7 34 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAACAACGCTTGTGGGCTAGGGAGGGGAACCCACAAGCGTTTTTGGGGATACCCACTTAGGTGGGTTGCTATATTTGTATCAGTGCCAGATGCGTTTGTGTAGGGAAAAAAGTCCTGCCTAGGCCATTTCGGGCATCTGGGCCAGGGCCACCTGCCCCAAAGCAATGCCTCCATCGCCAGGTGGCACAGCCTGGTTCCAGTACACCTCAAAACCCCGCGCCCGCAGCACGTGTAGGGCCAGCCCGTGCAGCAGGCGGTTTTGCCATACCCCACCCGAAAGTGCTACGGCAGAAAGGCCGTGCAGCTCGCGCAGGTGCTGGGCCATACTGGCTACCCCTTCGGCCAGGGCGTGGTGAAAGTGTCGGGCGATTTTTTCTCTGGCAAAGCCCTTTTGCATGTCGGTCAGGATGGCCTCGAGCAAAGGGCGGTAATCCCACTGAGGCGGGTTGGTAGGCAGGATGGAAAGGGTATAGCGGGCCTGGGACTCCGGCGGGGCGCTG # Questionable array : NO Score: 8.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 6-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVI01000037.1 Meiothermus cerbereus DSM 11376 Q355DRAFT_scaffold00034.34_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ............................. TCGGCGTGGTCGCCCTCGTTGCGCTCGGCGTC 67 29 100.0 32 ............................. AACGCCTCCAGCAGCGAGGACTTGCCCGAGCC 128 29 96.6 32 ..........T.................. TTCCTGGAGAAGGGCAACCCGCTCAGGGCGGC 189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCAGCG # Right flank : GCTATCTGCGCAAAAAAGCCGTTCCCAACCCCGCCACCACCACCAAGAGCCCTGCGAGTACCCCATACACCACCACCGGCTCGGAGGCGTGGGCTACCCAGATGCCCACAAAGGCCCACAGCAACACCAGGTTGAAGGGGATGTCGCGCCGGGTCTGGGCAAACACAAACCCGATGCCTGCTGCAACCAACACCAGCAGGGCGGCCCAAACCTGCCCAGAAATGCCCCCGCCGTTCCAGCCCAGCTCGAGCAGCGTGGTAACTGCGTTGGCGGCGGTCGCTACAGTAATCCAGCCCAGGTAGATGCTAAAGGGAACTCGAGCCAGCCAGCTTTCGGCAGCCGGAACGGCCTCTTTTCCTATTCCCAGCCGTTCGTACAGGAGCACCAGGGTGGTGAGCAGGCCCAGCATCATCACCATGCTGGGCACAATCAGCAGGTAGTGCCAGCAGAGCAACCAGGCCACGTTGAACCCACAAGACAGCACAAAAAGCCCGCGGGTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //