Array 1 649763-649929 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811794.1 Atopobium sp. HMSC064B08 Scaffold40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 649763 36 94.4 29 ......................T......T...... CTGGATTGCAGAATGCACGAGCTGACATG 649828 36 97.2 30 ..........................A......... TCACCGGCTGGCAACTCTACGATAACCTCT 649894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTGATTACCAGTCAGAATGACACTGCTCCAAAAC # Left flank : TTGTCGTCCGCCGTGGAGCCCGAGAAGGTAATGCTCTTGCCGTCATCGGTCTTCCACGTGAGCGAGGCCGTGCGCTGCCTCTTGTTCGTGATGTCGGGCGACGTCAGGATGCCGGTGCCGTCGCTCTTGAGGTCGAGGGTGAAGCGCAGTCCCGTCTGGTCGACCGTGGCCTGGTAGTCCTCGTTCGAGACATGCGTCACCTTGCCATCCTTCTCCGTGAAGTCCTCGTTATCCAGCTCATAGGTGCCGACGAGCTTGGTGGCATAGTCCTCGGACTTCGTCTTCGAGTCGTCGGACTTCGTCTCCTCCTTCGTCGTCTGGGTCGAACCGGAATTGTCGTCGGTGACCTGCGGGGCGAACAGATTGCAGCCCGAAAGTGCGAACACCAGCACGGCGCCTGCGAGCACGGCGCCAACCTTCTGTAGTCTCATCATGCTCCTTACCTGTCCTTCATCGTCTTCCATGCCGACGCGGGGACAAGGGACTCCCCACGGGATGCG # Right flank : CTTTTAACCACAGTAATTTAAAATTCACCACACCTAGCTATCGACAAATTAATTGAGTAGAACTAGCATGGAACAGCCAGTGTAGTTAGAAACTCAGAAAGTGGGGCAAATACTATGAGTATGCTGAAAGATATCCATGATTACATAAAAAAGGATTACGAAGCGGGAAACTATGATGATGCCAAGGCAGCCTATACTTCTTGGAAAACCGAGAATAACCAGCAATCTAATCTAACCGATTTTGAAATGGGTATCCAAAAAGCCCAAAGCGATTATAAAAAAAGCGGGACATTTGCGATCTATCCAAAGCTAGCAATTGATGTCGCAAACAAATTATTTAATGACAAAGCTTTTGAAATCAGTGAATTTATTCGCGGATATAATTTGGAAAAAGAAAAAATCAAAAAACATTAAAGTTATATGCTTATAATTTCTTTGATGCAGACGAAAAGTCATAATTAATTAACAATCGTTGGACGAAACTTTAAACTGCCTTCTGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTCAGAATGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 653247-653413 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811794.1 Atopobium sp. HMSC064B08 Scaffold40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 653247 36 91.7 30 NNN................................. CCCTAATAAGAAACGATCCAATCCAGTCTC 653313 36 100.0 29 .................................... ACGCGTCAGCTTCTATTTCCCCGGTAAAA 653378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTGATTACCAGTCAGAATGACACTGCTCCAAAAC # Left flank : TTGTAAAGCCCGCAGTATTGGGGTTAATTCTCTGCGTAGCAGCCGTGGTTTTCTTTGTGAGAAGAAGAAGTAATGCAGACAATGCAGGTCAGTAGGTAAGTTGTATTGCATAAGATAGTGCTTCTTATAAATCAGTCTAAAAGTCGCATACGGTGTTTATCAGTGATTTAAATACTCGATACACGCGTGTTAAATCTTCTACAGGGACGTACTCATTTGGTTTATGAGCACGTTCAAGTTCTCCAGGCCCATATGACATACATTCTGTATTTTTACAGGTGGATGCAATTACAGCAGTATCGGTGTTTGATTACCAGTCAGAATGACACTGCTCCAAAACGGATATGCTCTGCTTAAAGCTGCTTCTAAGGTTTGATTACCAGTCAGAATGACACTGCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCATTAGAGCAAATTCTCCTACTGCAAAGGAGACAGTAATTCCAACTAGTATCCCTATCATAACTCAAGGAAGTGCTGGTCAACGGTATTTTTTTGTTCGTACTTATAGTACGACTCATCCACTTTGTTCTCAAGCAACAAGACACGGATTTTCGAGAAAAATATATACTCGTAGAACCTTTCAAGCTCACTTTTTGTCAAAAAAGTCTTGAGATTAACAAATGTCAGAATCTTATTACATCCTGCATCAAGTGCCAGTGAAACGAAAGATATCAAATTATCAAGGTACGGCCGATCTATTTGAATACCGATACCAAAACCAAGCATCTTAAGGTATCGCTTAAAGTCCCATTCTAAACTAAATTCATATTGAGACTGAAGTCCCACACCAAGCTTCATTAGATTTGTCATAAGCAAACGCTCAGTAGATTCAATCTCAGTTCTTATAATTTCATCTTCTAAAAGCTCGCGTTCCATTTTCTTAATAACCTCTCCTATAA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTCAGAATGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //