Array 1 16169-14271 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDUA01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss44 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16168 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 16107 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 16046 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 15985 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 15923 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 15862 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 15801 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 15740 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 15679 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 15618 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 15557 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 15496 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 15435 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 15374 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 15313 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 15252 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 15191 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 15130 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 15069 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 15008 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 14950 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 14889 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 14828 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 14767 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 14706 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 14645 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 14584 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 14523 29 100.0 11 ............................. CGGCCAGCCAT Deletion [14484] 14483 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 14422 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 14361 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 14300 29 93.1 0 A...........T................ | A [14273] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34067-32451 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDUA01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss44 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34066 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 34004 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 33943 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 33882 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 33821 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 33760 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 33699 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 33638 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 33577 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 33516 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 33455 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 33394 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 33333 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 33272 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 33211 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 33150 29 96.6 32 ............................M ACGCCGAGGGTGAATATTTAGACCGGGACGCA 33089 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 33028 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 32966 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 32905 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 32844 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 32783 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 32722 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 32661 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 32600 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 32539 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 32478 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //