Array 1 1827-2595 **** Predicted by CRISPRDetect 2.4 *** >NC_014656.1 Bifidobacterium longum subsp. longum BBMN68, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1827 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 1888 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 1949 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 2010 29 100.0 32 ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 2071 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 2139 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 2200 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 2261 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 2322 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 2383 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 2444 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 2505 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 2565 29 82.8 0 ............C......T....CG..C | AC [2587] ========== ====== ====== ====== ============================= ======================================= ================== 13 29 98.4 33 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CCGTTTCACGTACCGCTGCACCGGCGAATACGAGCCCTCGTAGCCCTTCTCCGACACGAGTCTGTCGTACACGCGCTTGGCGGTGTGCCGCTGCTTGCGGGGCATGAACCGGTCCGCCTGCAGCCACCCGTCCACCGTCGCCCTGAACGGATCGAGCTTCGACGGCCGCGATACGGAGCGCTCCGGTCCGGGAGAGCAATCCTCCCTCCCGGCGTACTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTCGCGATGCTCCTCCATGACATGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAAACCGAACGGTTTGACTTTCAACTCGGGAAACTAGTCCAGGCAGGACGGGCCGGTGTTCGTTTCTCACCACACGCTGAAGTGGACCAGAACCTGCCGCTCACATGGAAGACATCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACAG # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4112-4686 **** Predicted by CRISPRDetect 2.4 *** >NC_014656.1 Bifidobacterium longum subsp. longum BBMN68, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4112 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 4173 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 4234 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 4295 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 4356 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 4417 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 4537 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 4597 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 4658 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATGACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2265338-2265915 **** Predicted by CRISPRDetect 2.4 *** >NC_014656.1 Bifidobacterium longum subsp. longum BBMN68, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2265338 29 100.0 32 ............................. GACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 2265399 29 100.0 32 ............................. ATGTTCGTGTCGAACGTGCCGGCCGGCAGGGT 2265460 29 100.0 32 ............................. GTGATGGGCAGGTTGCCGCCGGTCCAGGTGAG 2265521 29 100.0 32 ............................. TCCACGTTGTCGATGACACCGGTCATGCAGGC 2265582 29 96.6 32 ............................T GCGGGAAATCGCAGCTGGTACGCGGTGTGCAC 2265643 29 100.0 32 ............................. GACCGGCCATGAAGCCACGCTGCATCCTGTGC 2265704 29 100.0 32 ............................. TGCTCTCGTAGCCGACGCACGTGCTCTCACGC 2265765 29 100.0 32 ............................. TGGTTTTCGGTTTGCTTTACCCATGTTTTAAA 2265826 29 100.0 32 ............................. TCCATTGGAGGACGCCAGCTTTCGGGCAGGGT 2265887 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : ACCACGGGAGGCAACGGCACCCCCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //