Array 1 1600831-1608090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036528.1 Ureibacillus thermophilus strain LM102 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1600831 33 100.0 34 ................................. GGTAAAATCAATGCCCTCATAAGAAGCCGCAATC 1600898 33 100.0 33 ................................. TTTGCTGCAAACTACTGCTGATGGAATGCAAAG 1600964 33 100.0 36 ................................. AAGTTCTGAAAGGTTAATAGTCACTGAGGGGGCGAA 1601033 33 100.0 33 ................................. AAAGTCGCGAATATACGATATGTTGCGAACCGG 1601099 33 100.0 34 ................................. GTAAAATGTGCTGGACACCATACCACGCTATAAT 1601166 33 100.0 33 ................................. AGTTATGGGTAAAGGTAATTCCTCAGGTGCTGG 1601232 33 100.0 35 ................................. TTTTAGGTGATTTACCAATAGTACCATCAGCAAAA 1601300 33 100.0 36 ................................. AATGTGTTCGCTTTTTTTGATAGCAAACACGCAAAG 1601369 33 100.0 36 ................................. AGAAGGACGCTATACGTACAACGAAGGAAGCACAGC 1601438 33 100.0 34 ................................. AGAAGATGGCAACGATATGATTATCAGTCATGAC 1601505 33 100.0 37 ................................. TCCTGACGAGATTTTAAAAGCATTAACTGATGAAACC 1601575 33 100.0 33 ................................. ACATGAAAGTGGCCAAACGAATCGCGCAGCTGG 1601641 33 100.0 33 ................................. CATTCATAGCCTCAATCATGTTTTCATCAACAT 1601707 33 100.0 35 ................................. ACTATTATTAAATGCTGATGGAAAAGATTTATTAC 1601775 33 100.0 36 ................................. TTTCTACTGTGATGATCATAAGCGTAGACGCAAGAA 1601844 33 100.0 34 ................................. AAACAAGGGATGGTACCGACAATGAGCCTATTAA 1601911 33 100.0 36 ................................. GATGAATTTAATAAAAAGCAATCCACTTGGAAAGAA 1601980 33 100.0 35 ................................. GGTTCGTATTACTCTTTGTACCAAGTCCGAAATAT 1602048 33 100.0 35 ................................. AAGAGTGATGTTTGTAGATGCCTTCCCCATATAAT 1602116 33 100.0 34 ................................. AAAAATGGAAGGATGGAAAAGCAACCGTTGCTGA 1602183 33 100.0 37 ................................. ACAGTAAAATCGTTTAGAACTCATCACGATGCTTATG 1602253 33 100.0 34 ................................. AAAAGTAGGTTTTAGGGCAATTCCTAAGAAAGTC 1602320 33 100.0 34 ................................. CATTGTAGATATAGCTTTCAAACCCGGTTCCGCC 1602387 33 100.0 34 ................................. ATCTTGGATTCGATCAAGGCTTTCCGGGCCAAAG 1602454 33 100.0 33 ................................. TCAAATGAACCATCACCTAACCGAATTTGAAAT 1602520 33 100.0 34 ................................. TCATCAAGTATCTCGACTCTAAAACCGCCTTCAG 1602587 33 100.0 33 ................................. ACGATCGCAAGTGTAAGGTCTTTCTCCCTCAAG 1602653 33 100.0 34 ................................. AAGGTGTTGACATCCCGGTTATTTTTACGATGAA 1602720 33 100.0 35 ................................. TTACTCTGTTGAAGATTGTACAGTTCACGTGCAAT 1602788 33 100.0 34 ................................. ACAAGCCATTGGGAACGTAACAAAATCTGCAAAA 1602855 33 100.0 35 ................................. TACTCGTGGCCATAGATCCACTAAACAACGAGAAA 1602923 33 100.0 35 ................................. ATTCTGTCATCGATCACATCATCATCAAAGATAAA 1602991 33 100.0 34 ................................. TCTTTGTTTGCGATGGGATAACCTCTGCTGTTGG 1603058 33 100.0 34 ................................. AAAACACTTGGGATAAATATGGCGACAAAGTTGC 1603125 33 100.0 34 ................................. ATTATGCATTTGAGATATACCAACCCGGACGCGC 1603192 33 100.0 34 ................................. ACAACGATAAGGCTGCTCTTTTGAGTAGCCTTTC 1603259 33 100.0 34 ................................. GTTTAAAATGTCAAGAGTTAGAGATAAATACTCT 1603326 33 100.0 37 ................................. TTTTTTATTTCTTTTAACATTTCAACAATTGAATCGT 1603396 33 100.0 34 ................................. ATAAGCTGTATGTCCTTGTGGCACGTCACTAAAC 1603463 33 100.0 35 ................................. CATTGCGGAAGGCAGAAAAATTGCATGCGTTGAAA 1603531 33 100.0 34 ................................. CATACATTTGTAGATGTTGATTTAATTGTGTCCC 1603598 33 100.0 34 ................................. TTGGGTGTTGGGGAATTTGATAAAGATGAATATA 1603665 33 100.0 34 ................................. TGTGGATATTGAAGATTTAAAACGAGATGCAGAA 1603732 33 100.0 35 ................................. AAAAATGAACACAGTTGAAGAACTTGAAGCGAATC 1603800 33 100.0 35 ................................. TTTGATCGCAAACAAGTATCTGTAAAATGGGTAGA 1603868 33 100.0 34 ................................. TTGCCTCAACAGGTAGCAAAACACTTGAACTAAA 1603935 33 100.0 33 ................................. ATTCTCCTGCTGTAACTGCTCCACTTTCTCCAC 1604001 33 100.0 34 ................................. GAAAAATCGTAATCCAAAATTATTAGCACAATAA 1604068 33 100.0 35 ................................. ATCCTTTACTTCACCGCCTTTCACGCTGTCTGCTC 1604136 33 100.0 34 ................................. CTGTATCGGTTTGCCCTCTACTTGCTTGATGCCC 1604203 33 100.0 35 ................................. CTCCCTTCGTCATTTATTGATAAAAGAATAACATC 1604271 33 100.0 36 ................................. CAGGACCCGGATTCTGGAGATGTGCAAACGGCATAT 1604340 33 100.0 35 ................................. AATAATTTCTGTTTTTGTAGAGGCGCCCGTTAAAT 1604408 33 100.0 35 ................................. ATGAAGTGGTTTAATCGAGGTTTTAACCGGTTGAA 1604476 33 100.0 34 ................................. CTCCAAGCGCTCCGAAAGTCGGCAGGACGTTGGT 1604543 33 100.0 33 ................................. AACTAATACCTGATACGGTTTATTGTCGTACTC 1604609 33 100.0 35 ................................. ATTCGAACTTGTAGCAAACGGTAACAACGTCAAAG 1604677 33 100.0 36 ................................. GTTAAATTAGCGGACCCAGTAACATTCGAAAATCAT 1604746 33 100.0 34 ................................. CTAGAAACTGGAACTCTCCAGACCGTTTGAAATG 1604813 33 100.0 35 ................................. AATGGAGGTGTTAGTGTTATGTCATCTACTAAAAT 1604881 33 100.0 36 ................................. ACCCAAAAGAATACTAATATATCGGTGTAAATCCTC 1604950 33 100.0 35 ................................. TGTCACAGTTGATGTAGAAGATCCAGCTATCCATG 1605018 33 100.0 37 ................................. AGAGAAAGTGGAAAAATGCTGACTTTGAATAAAAGAG 1605088 33 100.0 34 ................................. AATTAGTTTAGTTGGTGGTTTGCACAACGAAGAG 1605155 33 100.0 36 ................................. AAAAACTCTTTAGCCTCAATTTCAAAACCTGTCCGT 1605224 33 100.0 34 ................................. CCTCCAACAAATGCTTGTGTTCAAAGATGTTACC 1605291 33 100.0 34 ................................. TCATACGCTCCAGATATTCTGTCATAGCCATAGT 1605358 33 100.0 34 ................................. TGTCGGCAAGAGTGCAGTAGCCCTCTTTGCCGAC 1605425 33 100.0 35 ................................. TAAAATATATCCGATGATAAAATGATAAAGCGCAT 1605493 33 100.0 34 ................................. AATAATTTTTCTTGAACCCTGTTACGTTAATGTT 1605560 33 100.0 34 ................................. CTCTATAACAGGTGTACCGTCTTTGTCGTAATAC 1605627 33 100.0 37 ................................. ACATAATCCCCCCCACACAGATTAGTACCACGTGCCA 1605697 33 100.0 34 ................................. TAACCCAGTCACGAAAGTTTGGATATGATTTTAT 1605764 33 100.0 35 ................................. TCGATAAACTGATTCATAAAGCGTTTTTCCGAATC 1605832 33 100.0 34 ................................. AAATTCCAACGCTCACGAGCTTTTTCAAGAGCCG 1605899 33 100.0 34 ................................. TTGTGGGTACTGTTCGATAAAGACAGTCAAAATC 1605966 33 100.0 34 ................................. CGTGATAACGGTTATAAATTTTATTATGATTTAA 1606033 33 100.0 36 ................................. TGATAAAAACAAAGAACATTTTATTAACATGTCAAT 1606102 33 100.0 35 ................................. AACTATAACAATTTTTTATACACTCATATATAAGT 1606170 33 100.0 33 ................................. ATATTCGGCGTTTTTAACGTCCGTTAAAAGCAT 1606236 33 100.0 35 ................................. GATAATTTGTCCGAATATGTGCCGCTATGGAGCCA 1606304 33 100.0 34 ................................. TTCCGCAACTGCAACAATTGTGGAAGAAAAAACT 1606371 33 100.0 34 ................................. ACCGTACAGATCCCAGAAGATAAAGTGGACAAAA 1606438 33 100.0 36 ................................. TTCTCTTGTCATCTCTTTCAAAACTCTCCACTGATT 1606507 33 100.0 34 ................................. TCGCTAATTCCAACTTCGTTATACCCAATTCCTT 1606574 33 100.0 36 ................................. CCGTAACCTAATAATACTCGCCCGAATTTTGTCTGC 1606643 33 100.0 35 ................................. ACATCTACCCCGAAAGGTGCATGTAGTTTACGGTC 1606711 33 100.0 35 ................................. TTAAAGTAAGTAAAAGGAGTGAAATAGGATGTCTA 1606779 33 100.0 35 ................................. ATTTTTGGACCTCCTTCGTGTTTTTAGCGGCACCA 1606847 33 100.0 34 ................................. TTAGCAAAAGCGACTGAATTTTTTAAAATGCAAC 1606914 33 100.0 34 ................................. TCACGACCAGTGCCGCTTACAAACACAGGCTTAC 1606981 33 100.0 35 ................................. TTTTTTGATTTCACTCTCAATCGCCATGTAAGCTA 1607049 33 100.0 34 ................................. AAATAGGTATGTGTAACCACCAGAACGTAATCTG 1607116 33 100.0 34 ................................. CGAAATCAAAGAAAATGTACTATCCCGGTGTGTA 1607183 33 100.0 34 ................................. ATCTGCTATTGACATAGCTCTACCTGCTTCTGTC 1607250 33 100.0 34 ................................. TCGTAGTTGATTCAGGCGTATTAACGCCGATTAA 1607317 33 100.0 34 ................................. CTTTCATTATCCCTGTTGTTATGAGCGCTCCGAA 1607384 33 100.0 34 ................................. AATCTGCAAGTCGGTGAAAATAAAATCGGCTTTA 1607451 33 100.0 34 ................................. GGCTATATCGCATCAAACATCACAATCCGTAAAG 1607518 33 100.0 35 ................................. AATCATAGCAGTCGTTTTACCGTCACCTTGACGAC 1607586 33 100.0 34 ................................. GATGGTTGGTATTTTAGCGATTAGCCAATTTGCT 1607653 33 100.0 34 ................................. TTTTGTTAAGATGATATTTTCGTAGCCTAATGGG 1607720 33 100.0 34 ................................. TTTGCTAAATGCTCCATATATTAATGCAGTTACA 1607787 33 100.0 35 ................................. ACAATGAATCTGTTTGATAAATGTGCCAAGAAATG 1607855 33 100.0 34 ................................. AACAGTTCTTTCCTTTCTTGTGTTATCTGTTCTC 1607922 33 100.0 34 ................................. TATCATGGCAGTCGTTTTACCGTCACCTTGACGA 1607989 33 100.0 35 ................................. CATATTTTCTACCTCCACACTTTAATTAATTTATT 1608057 33 87.9 0 .......................A.CG.C.... | A [1608080] ========== ====== ====== ====== ================================= ===================================== ================== 108 33 99.9 35 GTCGCACCTTACATTAGGTGCGTGGATTGAAAT # Left flank : CAGTTTTTGAATGTGTCGTGGATCATACTCAATTTTTTCAATTAAAAAAAGAATTGTCAGAAATCATAAATGAAGAGACTGATAGTTTGCGATTTTATCAGTTAGGAAATAAATATAAAACAAAAGTTGAACATGTTGGTGCTAAGACGACTTTAAACGTAGAGGATCCATTGATATTGTAAATACTGTTATTATGTTATTATGTTATTAAGGTTTTATATATTTAAGTAAGAATTTTTTTAGAAGAGCAGAAGTAAATTTTATATAACTGTTATGTTATAATTTGTTGAATATTGGATATTTAATATCAAAAATATGCTAAAAGTATAGTATACAGTTTGGTGCTAATGTGAAGTGAACATAAATTTACGGGGGGATTAGCACCAAAAAATTACATAATAAATTACTTATTTCACCATTTTTTAAAACTAAAGTTTTGTGGTTCTATTTAATTTTATTAAAAAAATTTAAAAAATGTTAATTTATTGTCGATTTTGACA # Right flank : TCTTGCACACCTTCTTGATGTGCTAATTTCATGAGATAATCTCCTCAAGATGAAATTGAAGGAGTTTTTTTTATGCCTAAGAATCCTGAATTACGTAAGGTTTGGGAACAACGAATCGCTGACTATCGTAAAAGCGGTCAAACTCAAGTAAACTGGTGCAAGGAAAATCAATGGAGTATTCACCAGTTTAAATACTGGTTAAGAAAAATTGAAAATCCAATAAACAATCAAGGAAAGTCTACAAAATGGGCATCCGTTACCCTAGAAGATCATTCACAAACAGTTGAAAATTCATTACGGATTGAAATTAGTGGGATTTCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAGTGATTGATGGTGGGGAAACTGTTTAATCTTATTTGGGGAATTCTGTTGAGTTCTATTTGTGGAAAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACATTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2842653-2840797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036528.1 Ureibacillus thermophilus strain LM102 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2842652 33 100.0 34 ................................. TAACGTACTTGTATGTTTTGACGTAACGATTTGT 2842585 33 100.0 34 ................................. AAAATTGGATTGGAAAGAAAATAGAAATAAATAC 2842518 33 100.0 37 ................................. TAATATCCGATTGTTTCAGATTGAAAATCGCGAAACC 2842448 33 100.0 35 ................................. GCATTGTCTGATTTTTAATTGCGGTTCGTTTCTGA 2842380 33 100.0 35 ................................. ACGAAGAGTGGGTGGAATGCACTTGTCCAGCATGC 2842312 33 100.0 34 ................................. TTCCACAGATTCAAATGTTGTGTATTGTGCTAAA 2842245 33 100.0 35 ................................. CTTAATCAAATTATAAATTAATAAATTAAATTACG 2842177 33 100.0 34 ................................. TATTTATAGTTGAGGAATTAAATAGATGTTTATT 2842110 33 100.0 34 ................................. AATAATGCAACTTACTTAATATACGGAAATCCTG 2842043 33 100.0 34 ................................. CAAAAACTGGACTATTGCTGTCAAAATGTAATTC 2841976 33 100.0 35 ................................. TGATGAAAAGGCACCAGAACAATCTACAAACGAAC 2841908 33 100.0 36 ................................. ATTTTCAGTTAACTCATTTACGTTAACTGCATACTT 2841839 33 100.0 33 ................................. GGTAATTTTGAGTATTTAGACGTACAAGAAGTT 2841773 33 100.0 37 ................................. TTAAGCAAACTGTGCGCACAATTGACGCGTTTCTTGA 2841703 33 100.0 34 ................................. TAATTTAATATACAATCAAGAGATTTTAATTAAT 2841636 33 100.0 34 ................................. AATAGCTATGCTCTCGTTATCTCTTTTAATCTAT 2841569 33 100.0 34 ................................. AATCTTGGAATCAAACTCGATTCCATCCACTTCG 2841502 33 100.0 35 ................................. CGGTTGTGATAATATCGGTAAGTATATAGCTGAGT 2841434 33 100.0 34 ................................. TGCATTTTATTTGAATGGTAATAAGATATTTAGT 2841367 33 100.0 34 ................................. ATAGATACGCAAAATCAAACCGCAAGACTGGTTT 2841300 33 100.0 34 ................................. AATCTTGTCGTTCAATATATCTACGTCAGTAATC 2841233 33 100.0 34 ................................. ATCACATATCATTTCGCTTACTCGAACGACATGA 2841166 33 100.0 34 ................................. GCTATCGTACCATTTTTTTAAATAGTCGCTAGAA 2841099 33 100.0 35 ................................. ATCCGCTTCCAGTCGCAATTTTCCTGAAAGTTTAC 2841031 33 100.0 35 ................................. TATGCGGATAATGGTCCATATTTCACGTACACATC 2840963 33 100.0 34 ................................. ACTAATGATCACGTCCATTCTTCCTAAATTTAAA 2840896 33 100.0 34 ................................. CAAATTATTCGTTGGGCAGACCTTCATCGACATA 2840829 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 28 33 100.0 35 GTCGCACCTTACATTAGGTGCGTGGATTGAAAT # Left flank : TCAGCATGGCTAAAAACAGAGAAAAGCAATGTTTTACCAAAGAGTCTATTAGGTCAAGCCATTACATACTGCCTCAACCAATGGGAAAAACTCGTGGCATTTTTAGAGGATGGACGTTTAGAAATCGATAATAATCGAAGTGAACGATCCATTAAACCATTTGTGATCGGAAGGAAGAACTGGATTTTTAGCAATACTCCGAAAGGAGCTAAGGCCAGCTCAATCATTTACAGTATTGTGGAGACAGCAAAAGAGAATAAATTAAATCCATTTTATTATCTTCGCTACTTATTTGAAAGGCTTCCCAATATGGACATAAGCAATATGGATGAGCTTGATCAACTACTTCCTTGGTCCAAAACAATTCCTTTGAATTGTCGGGTTTTTAATAACTTATCACAATAATAGTATTTAATCCCTATCATTAAAAGGTGGGGATTATTTTACGCTTACCGTGGATTGAAATCGTTTCGAATTTAACTTGCAAAAGCAGTTGGAAA # Right flank : CATTGAAGAATATCATTTCAACTATTGCGACGGTAAACCCGAATTCAAACGACGCATTTCAACCAATCGCACCTCCCTGTAAGATAGAGTTATCGATTACAGAGGAGGTGTTTTTGTTTGGCAATTGAAAGCGAAAATTTATTTTGGAAGGAAGGGGTACCCCTTCCTTCCAAAATAAAATCTATGTGAACCAAATTATTTAATAAAAAACACTTGACTAGAGGTAAGAAAGGAGCTGATTCAAGATGAAAAAAGATTAATGGAAACTAAATATTCTTTTGATGTTCCAACTAATGATTGAGAATCTCAAAAAACTCCTTCCCGTGCAGAATGCCCTATTGCGGTCTACTAACCGAAATTACAGAAACTGATGTTGCTTTCTGCAGTTGTTGTAATCGGGAGTTGGAAATTTTTTAAGTATAATTGACGGGATATTTTTAAATGGGGGAATTTTGTTTTTTTAATTTTAAGGTTAACAAATGTGAAAAGAATAATATATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACATTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //