Array 1 34557-34972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRE01000027.1 Listeria monocytogenes strain CDPHFDLB-F15M04169-E005-2 F15M04169-E005-2_Contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 34557 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 34622 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 34687 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 34751 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 34817 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 34881 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 34944 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : CTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6265-8348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRE01000042.1 Listeria monocytogenes strain CDPHFDLB-F15M04169-E005-2 F15M04169-E005-2_Contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6265 35 97.2 0 ...................................- - Deletion [6299] 6300 31 83.3 0 C..............................----- - Deletion [6326] 6331 36 100.0 30 .................................... GTATTGACGAATACTACCGTAGAAGTATTC 6397 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 6463 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 6529 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 6595 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 6661 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6728 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6794 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6860 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6926 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6992 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 7058 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7124 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 7190 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7256 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 7322 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 7388 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 7454 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 7520 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 7586 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 7652 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 7718 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 7784 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 7851 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 7917 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 7983 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 8049 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 8115 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 8181 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 8247 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 8313 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 98.6 28 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //