Array 1 192371-192042 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLP01000004.1 Vibrio cholerae strain Santiago NODE_4_length_245284_cov_74.7488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 192370 29 100.0 31 ............................. TGATGCGGATATGACGCCTATCAAACAGGAT 192310 29 100.0 31 ............................. AGGCCAGTAAAAGCACGATAGCCACGATTGA 192250 29 100.0 31 ............................. GTTTGATGTGGTCGGTCAGGTGGTTCACATC 192190 29 100.0 31 ............................. CTTCGTCCAATTCGTGACCGATGAGTAGTAG 192130 29 96.6 31 ............................T GTGATCGCATTTCCCACGGTTTCAGCTCTTC 192070 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= =============================== ================== 6 29 98.9 31 GTGAACTGCCGAGTAGGCAGCTGATAATA # Left flank : AAATGGAACAACTTCAATATTTTCATATATCAAATACTGACCTCGTCCCAGAAGATTGTAGGTACGTTTCATTTCGGCGCTGCCAATCCATAGATAAAGTCACAACAGCTGGGCAGGCAAGGAAAATCAGACGGCTGGAGAAGCGTGCTCACTCTAGAGGCGAATCGTTTGCCCCATCGTCGTATGCTCCAAAAGAACATACGGTATTGCCACATTATCACTCACTTGAGGTGTCCAGCAAACAGAGGAACCGTAACTTTCGACTCAACATTAGAATGAGCTGGGAGCGATACCTCGAAGGAACCTTAGTTTTTAGCAGTTACGGCCTATCAAACTCAGAAAACTCGTTACAGCCGGTGCCCTTAATCTGACCCTTATTTTTCAACTCGTTACAACCATATGAAATTATTAGTGTTTTATATACTGCAAGAAAAAAGGTAAAAAGCACTTCTTAGCATCTAATTAGTTGAAAATAATGAGCTAAACTTTAAGTGATAACT # Right flank : AACGAACCACCTTCATTCGAGTACAAGAGCACTTTACTACTGAATAAGTAGATAACTACGGAAGAATCTCTCTAACATCACACTCAAGCACCTGCGCTAATTGATAGGCTTTTTCGAGTGTGATGTTTACTTCTCCTCGTTCAATTCGCCCAACATAACTTCTGTCTATGTTCGCTTGCAAAGCTAGTTGATTCTTGGACACACCTTGATCTTGGTACTTATTGTGTAAACACTACAATTTGACACTCGTTGAACACATGACCTGCTACACCTGGATTAGACAAATGGACGACCGAACAACCGCAACGAAAGTATCAACAGACTCATCCGACAATATCGACCCAAAAGTACCTAGATGTCGACACTCACTCAAGCAGAGTTCAACTTGATTACCCGCAAACGTAACAGTAGCGCCAGGCCTCGCATAGGCTTTCATACTCCAGGGAATGTTTTGTGGGATATTATTGCTGATTGTTGCACTTCAAACTTGATACTTAGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAGTAGGCAGCTGATAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 13504-16651 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRLP01000006.1 Vibrio cholerae strain Santiago NODE_6_length_212056_cov_80.0877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13504 28 96.4 32 ...........C................ GGCTTGAGTAGGCGCAACACTCGACCGATTAG 13564 28 96.4 32 ...........C................ TTTTTCTTTATCAGGATTAATTTCCAATACCC 13624 28 96.4 32 ...........C................ ACCAAAGTTTGACGAAACGAGAGCCAAGCAAA 13684 28 96.4 32 ...........C................ TGCAAATCATGAAGGTAGCGACCGTGATTCAT 13744 28 96.4 32 ...........C................ TATCACACAGCGCCAGATAAACATAGCGCTTA 13804 28 96.4 32 ...........C................ TATATCAAATCAGCAAAACAACTGCATAACAC 13864 28 96.4 32 ...........C................ AGAATATGAGATGGATAAAACGGTTACAAATG 13924 28 96.4 32 ...........C................ AACATCGAAATCGACCTTGGCCAAGTAACATG 13984 28 96.4 32 ...........C................ AACGAAAACCCAACCGGCAGCCGATGGTCGCA 14044 28 96.4 32 ...........C................ TGTAAAAGTCTTTCGCCTTCTCCAGTATCATT 14104 28 100.0 32 ............................ GTACAGACCGTTGTTAACTTCCACCAGCTCAT 14164 28 100.0 32 ............................ CTGCGGCGCATTGCCCGCATGATTGCCGCCGC 14224 28 100.0 32 ............................ GTTTTCCAGCCTTCTTTTTAGCTCCTCTGTTA 14284 28 100.0 32 ............................ AGCTCAATCGTTGATGTTTCAAAGCTAAACAT 14344 28 100.0 32 ............................ CATAAGGGATTGCAATCTGTTCTCCAAAAAAC 14404 28 100.0 32 ............................ CAACGCTTGAGCAGCTGGCTGTGTGGTTGTGC 14464 28 100.0 32 ............................ ACTTTGGGATGACGATGAGCTGTCTTTTATTC 14524 28 100.0 32 ............................ TCCCCGCCCTCCATGTTTACGACTGGCGGCAA 14584 28 100.0 32 ............................ AATTCCTCGATCTCAGCATGTTTTATTCCCAT 14644 28 100.0 32 ............................ AAGCGCGGCAGGCGTTGATTGTCATATTGAAT 14704 28 100.0 32 ............................ TTGAACAGAATGGACAAGATGAAGCGAAAATT 14764 28 100.0 32 ............................ ACACATTCGTATTCGCCGTCGGTGTTACATTG 14824 28 100.0 32 ............................ GTAAAAATGTTCTCAGCATGGTGTTTCGTTAA 14884 28 100.0 32 ............................ GTAAATTATACATTAACGACGGTTCAGCGGCT 14944 28 100.0 32 ............................ AGATGTACTTGTCGCCCGACTTATTGCGTAAC 15004 28 100.0 32 ............................ TTCTTCGGATAATCCCCACAATTCGGCAACTT 15064 28 100.0 32 ............................ CGCGCGTGCTGCCCTTGCTGATATTGATGTTC 15124 28 100.0 32 ............................ AAACGCTATCATCGCCGAAAGCATTCATAGTA 15184 28 100.0 32 ............................ TTTGAAAATATAATCAATTGATTCGACGTAAC 15244 28 100.0 32 ............................ GTGGTAGGTGAATCACGCGAATTTATCGCTAA 15304 28 100.0 32 ............................ ATATTGCTACAGTCCGTTGCGAGACGACCTGC 15364 28 100.0 32 ............................ CCATAATTGGGGCGTTATCATTATTCAAGATT 15424 28 100.0 32 ............................ TCGATCAATGGCGATTTGCTTTAGCTTCTTCA 15484 28 100.0 32 ............................ AACAGCGAATCACTGCCGTGCTCGTCCATTGG 15544 28 100.0 32 ............................ AACAACCAATAGCAACCCATCTCGCGACATCA 15604 28 100.0 32 ............................ CAATCAACCCAAGCCCTTGCCGCTAAAGGCCT 15664 28 100.0 32 ............................ GTTACAGGGTTAGGGAACCGACCCTCACATGG 15724 28 100.0 32 ............................ TAAAAGAGTGTAGCTCATCAGTTGAGTTCGCT 15784 28 96.4 32 ...........C................ GAGTCAGGAAGCCTCTTGTCCAACGATTCGCA 15844 28 92.9 32 ......A....C................ TTGAGAGCCATGCTTTTGCAAAAATCGTTTTC 15904 28 96.4 32 ...........C................ GCCACGCTAGGGAATCCACGGTTATCACTCCA 15964 28 100.0 32 ............................ TTCTCGCCGCGCCTAGGCTCAATCGTCATTGA 16024 28 100.0 32 ............................ CTGCAAAGCGCAGTCGTGCGTGCGATGTACGC 16084 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 16144 28 100.0 32 ............................ CTGTATACTCGGAAGAACAGGAAGAGGGCTAC 16204 28 100.0 32 ............................ TTCCCCCTCACCCTCGCCACCGGAACCACCAC 16264 28 100.0 32 ............................ TGAAATGCTTTCTATCAGGTCGCCCAGCGTCA 16324 28 100.0 32 ............................ TTTGAGAACTCCCACTTACGCACAGCCATCTG 16384 28 100.0 32 ............................ AGTAACCGCAAAAGCAAAGTTGAACTGCTGCC 16444 28 100.0 32 ............................ TCCGCCTGAATGTAATGCTGATGAAGTACTCA 16504 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 16564 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 16624 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 53 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGTGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTGCCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTGATTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTGTTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTACTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //