Array 1 138887-140134 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXP01000001.1 Cronobacter sakazakii strain MOD1-H269 H269_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138887 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 138948 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 139009 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 139070 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 139131 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 139192 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 139253 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 139314 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 139375 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 139436 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 139497 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 139558 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 139619 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 139680 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 139741 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 139802 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 139863 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 139924 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 139985 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 140046 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 140107 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166534-166867 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXP01000001.1 Cronobacter sakazakii strain MOD1-H269 H269_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166534 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 166595 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 166656 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 166717 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 166778 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 166839 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACAGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //