Array 1 225071-227172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVW010000003.1 Erwinia amylovora strain Ea17-1-1 Ea17-1-1_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225071 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 225132 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 225193 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 225254 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 225315 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 225376 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 225437 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 225498 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 225559 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 225620 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 225681 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 225742 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 225803 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 225864 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 225925 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 225986 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 226047 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 226108 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 226169 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 226230 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 226291 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 226352 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 226413 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 226474 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 226535 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 226596 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 226657 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 226718 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 226779 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 226840 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 226901 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 226962 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 227023 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 227084 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 227145 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238080-239696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVW010000003.1 Erwinia amylovora strain Ea17-1-1 Ea17-1-1_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 238080 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 238141 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 238202 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 238263 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 238324 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 238385 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 238446 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 238508 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 238569 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 238630 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 238691 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 238752 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 238813 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 238874 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 238935 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 238996 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 239057 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 239119 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 239180 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 239241 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 239302 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 239363 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 239424 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 239485 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 239546 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 239607 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 239668 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 249160-249488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVW010000003.1 Erwinia amylovora strain Ea17-1-1 Ea17-1-1_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 249160 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 249220 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 249280 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 249340 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 249400 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 249461 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //