Array 1 447749-448312 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFT01000053.1 Ligilactobacillus apodemi DSM 16634 = JCM 16172 strain DSM 16634 NODE_187, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 447749 36 100.0 30 .................................... AATTAGTAGATGCTATTGATATGGGTGATT 447815 36 100.0 30 .................................... TAGGCATATTCGTTATTTCCACGAGGTTGA 447881 36 100.0 30 .................................... TTTAACGTAGAAGTATATTGCCATGATCCC 447947 36 100.0 30 .................................... ACTCGGGTTACGTGGTGCAAACTGCTAGCT 448013 36 100.0 30 .................................... ATTACGAGCGGTATAAATTGGATCGCTACA 448079 36 100.0 30 .................................... ATAAGTCATCGCTGATCTGTGCTTAAAGTT 448145 36 100.0 30 .................................... AGATGAAGTAGGTGCCTTAAGTAATGCTGA 448211 36 100.0 30 .................................... TCGTTGTTTGATACTGTATAAATCATGATA 448277 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTAGTTTTGTATGACTCCAAAAC # Left flank : GATTTTGAAAAAGAGTTTCGGGCTTTAGCTAAGCCGTTTTCAGGAGCACGTGAGTTGTTAGGAAAAATTAAGGCTGCTGGCGGGCAGAGCTTTTTATTAACACACCGTGATCGGAGTTCTCTTGCATTACTAGAACGAGATGATCTCTTAAAATATTTTACTGATTATTCAACTTCTGATGATGGTTTTAAGCGTAAACCTGATCCAGAAGCATTGAATCACTTAGTAACTAAACATCACTTAGATCCTCAAGTTTCGGTAATGGTCGGTGATCGCTTGTTAGATATTCAGGCAGGGCATAATGCTAAAATGGCGGGAATTTTATTTGATCCCGATAAGATGATTGCCGAAGATACTAAGGCACAGCAAGTTGTGGTGTCTTTAGTTGAGATCAAATAACAAAAAATATGGGAGTTATATAAAACGAAAGTCTTGCTAGGATTAGTAGCGTGATTACGAAACTGATTTTGCACAAATTTGAAAAAAATTTTGCATTTGAG # Right flank : CGATGAATAGCGATGAATATAACAATCAAGTGTTTTAGAGCTATGTAGTTTTAGCAAAATTAAATATTTCTAGATAAACTCTATAAGAATGGTAGCGACTGTTTTTATAGAGTTTATTATTGTACTTTTCAAAATCAGCGGATAAAAAAACTGTGTAACGAAAAAAATTCATTACACAGTAAAAAATATTGTTTGTGTTACTTAGTCGATAAGTTGAAACATTAAGATCCCGGCAGCGACAGCTACATTTAGTGATTCCGCATGTCCTTTGATCGGAATATATAGATTTAAAGAAGTTTTATTTAAAAGTTCAGGATCCATTCCGTTGCCTTCGTTACCCATGATCAAAGCGAAGTCTTGGTGACGCCCAACTTGGTCATAACTACGAGCTGCTTCATTTAATTCACTACCAAAAACAGGTTTGGCTTGTGCTTTAAAAGCATCGACCCAAGTTAAAAGATCTGCGCTGACTAAGTCAATGTGAAATTGACTGCCTTGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTAGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 754538-754376 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFT01000053.1 Ligilactobacillus apodemi DSM 16634 = JCM 16172 strain DSM 16634 NODE_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 754537 30 100.0 36 .............................. CCAAAACGCAGTTTCAGGGATGAAAAGCGTTGTGAA 754471 30 100.0 36 .............................. CCAAAACTAAATCGGGTAGATAAACGCAATATTATG 754405 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 TGTTTTAGAGCTATGTAGTTTTGTATGACT # Left flank : TAAACATTTTTCTGAAATAAAAAAATATGAAGTACAGTGGGGATTCCTGCCAATTTACCATCTCAAATTTTAATATGAGTGATAAAGAAAAGAATTATTATAGGATTGCTGTAATCGCTTTAGTACTTGGGGTGATTATTTGGATGATAGATTTAGTAGTAAAGCTATGGTTGAAATAAATTGAACGTCTCTGACATACATTTAGATGCTTTCTTAGTATCCAAAATATTGTATAATTATAATGCTGAGAGTGAGCTAAAAGTTAGCTTTTGACGTTTTTTCGCCAGTGAAAGAAAATCAACTAATGTTAGTTGTAAATTTTCCAGTATCTGTGTAAGAAGAAGTTATTGTTTTTTCTCAATGTAGGGTCATATTTAATAGAAGACTAACTAGAAAAATTGCTAGAAAATAGCAGAGGAGTCATAAAAAACTGAAGTCTTGCTAGGATTAGTAGCGTGATTACGAAACCTCTTAAACCAATTTGAGGTTTTAGAGCTATG # Right flank : TCGCAATAGACCATGGTAGGTACATTATCATGGTTTATTTTGTTTGCACCGAAAGTCTACATGGAAAAACTAAAAAAACAAGAGGACTGTACATTTTATGGAGATTCTCTTGGCTTTTATTTTTAAGTATAAATCAAGAACGTGTAATAGAAATTTATAGCGAAAATTTTTATGCGTGAATAAAATTGAAATTTTTTAAAGAGCATATAGTTTTATATCTAAACATTAGAATTAACTATTAGGAATATATAATTTATTGTCAGCTGTGAATTAGTGTGTTTAAAAGCACGAGTTCACAGATTTTTTATGACCGAAATAAGTTTTTATTACTAAAATTAAAAAATGGATTGAAAAATATTAAAAGTAATGCTAGCATTCTTTTTGAATACGGGTACTGATATAAAGGTATTGAAAAAGAAATCAGAAGAAATTTTAGAGATAGAATATATTTCATGTATGAGTAAAGTAATATTCTCTACAAAAATTATTAATGATTTGAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGAGCTATGTAGTTTTGTATGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 756733-756900 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFT01000053.1 Ligilactobacillus apodemi DSM 16634 = JCM 16172 strain DSM 16634 NODE_187, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 756733 36 100.0 30 .................................... GGGACGTTTGATTTAATGCTATTGCCAAAG 756799 36 100.0 30 .................................... TATCTAGGAATGGACTATGTGCCAGGAAAA 756865 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTGGAGTCATACAAAACTACATAGCTCTAAAAC # Left flank : ATGGTTGACGATGACCTTGCTTTGTGTGTTGGTGTTTCTTAGGCTTGTACTTGAAAGTAACAACTTTCTTAGCACGACCTTGCTTTTCAACAGTACCTTCAACTGTAGCACCTTCAACGAATGGTGTACCGATAACTGTATTGTCGCCACCTACTAAAACAACTTTATCAAAAGTTACTTTTTCACCAGCTTCAGCAGCTAATTTTTCAACGTAGATCGTTTGACCTGCTTCTACTTTAAGTTGCTTACCGCCTGTTTGGATAATTGCGTACATCTATGTGCACCTCCTTGTAATTTACTTAGACTCGCCGTAATGTAGTGGCTCATAGTGAGCGCTTAAACTTAAAACGTGCGGTTGCAGTTGTGGCATGCACAAATACAACGCTAATATAATATCAAACTTTAATGTTGTCGTCAATAGAAATAATATTACAATTTTTTTAAATAGAAACTATGTAGCTCTAAAACGCACGAATAGTATTTAAAATACATACTTTTGG # Right flank : CTCAAACGCAAAAATTTTCTTCAAATTTATAACAAATTGGTTTCGTAATCACGCTACTAATCCTAGCAAGACTTCAGTTTCTATGACTCCTCAGATATTCTCCAACGATTTAAATAATAATCATTATCTAAAATATATTGAGGAAAATTATATAATTTTCTCGGTTCAAGAAACAAAGCAGTTACACTACTCAGTTCGACATATTCCAATAATTTTTCAAATTGTATTTCGGTCAAATATGACCCTACATTGATAAAAACTAATAGTTTCTTTTTACTCAAATACTGAAAAATGCGCACTATCTCGTAACATTTTTCATAAATAGATGCACAAGACGTTTCAACTTTGACTCCCATCGCTTTGATCAATTCCAATAAAGTGATCTCATCATACTCGAGATTTAGTTCATTTTCCAAACATTCACCTGAAATAATATTAGCAATCTCACTAGCCAATACTTCTAGTTTGGCTTTCAAGTCTTGCTTTTCATTGAACAGTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGTCATACAAAACTACATAGCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //