Array 1 147-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALA01000427.1 Cronobacter dublinensis 582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146 29 100.0 32 ............................. AGAACACCGGATCGCAGGTTGGCAGCGTATCT 85 29 96.6 32 ..............T.............. CCGCCAGAACTACAGGCGGCGGCAATGCAGAG 24 24 82.8 0 ........................----- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTGGTGACAATGCGT # Right flank : A # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALA01000185.1 Cronobacter dublinensis 582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 1 22 78.6 32 ------...................... GAAAAACGCTTCCTTATATATACGACGTTGCG 55 28 100.0 46 ............................ AGCTCCCCTCCGATTTTGNNNNNCACACACTTAATTAATTAAGTGT 129 28 82.1 32 ..NNNNN..................... TGCGGAAGTGGTGATATATTTCCGCGCCATAC G [131] 190 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================== ================== 4 28 90.2 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : TCCTGCTTTGTCGCCACCC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 203-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALA01000009.1 Cronobacter dublinensis 582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202 28 100.0 33 ............................ TCAACAGCCCGATGTACTACCCGCCGGTGACAA 141 28 100.0 31 ............................ CATGTCCAGCGGAGGCTCTATGCCGGTGGAA 82 28 100.0 33 ............................ CGCCAGTAGCTTTGAATGGGCCGAGAGCCTCAC 21 21 75.0 0 .....................------- | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTAATGGCTCGCCTTTTT # Right flank : C # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 269415-270398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALA01000393.1 Cronobacter dublinensis 582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================== ================== 269415 28 100.0 56 ............................ ACNNNNNCACACACTTAATTAATTAAGTGTGTGNNNNNCACCGCGTGGCCGCTAAT 269499 28 100.0 32 ............................ CGCTAGCACTATGGCCACAAAGAACAATCCAC 269559 28 100.0 73 ............................ ATAGGCAATCTGACTAAANNNNNCACACACTTAATTAATTAAGTGTGTGNNNNNAAAAGCCCCATGCCTGCTA 269660 28 100.0 32 ............................ AGAACGTCAATACCCGCTCTATGCCGGTGGAA 269720 28 100.0 74 ............................ CGCCAGTAGCTTTGATTTNNNNNCACACACTTAATTAATTAAGTGTGTGNNNNNTCCAGCGGGACCGGTTCCAA 269822 28 100.0 32 ............................ CCCCAGGAGCGACAAAAAGACCGCTGAAAGAA 269882 28 100.0 84 ............................ GCAAAGATGCCGGGCAGGNNNNNCACACACTTAATTAATTAAGTGTGTGNNNNNNNNNNCACACACTTAATTAATTAAGTGTGT 269994 28 82.1 33 .NNNNN...................... AGGGATTCCGGCTGGCTGGCGTAGCGGAGGTAA 270055 28 100.0 31 ............................ TGCTCGGTGGGGGTATCCGCACCGGAACGTT 270114 28 100.0 33 ............................ CGGCTGCGTGGGCGCCGAGCAGTCGATCAGGTC 270175 28 100.0 47 ............................ TGCGTCGACATTTCGCCGTNNNNNCACACACTTAATTAATTAAGTGT 270250 28 82.1 32 ..NNNNN..................... TGATATCCCAGCACGCGCTGGACCGCTTCGTT G [270252] 270311 28 100.0 32 ............................ GTACAGCAGCGGAGGAGTGTTCAAAAACGCAC 270371 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================================================================== ================== 14 28 97.4 46 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACTTTCACGTTTAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : AACCGACTGAACTGATTTGNNNNNCACACACTTAATTAATTAAGTGTGTGNNNNNCCAAACCGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACTCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGTGGTGGCGGCTCGCCGCTTTATTCCGGGAATGAAAGAGAGATTGAGGTTTCCTGGCTTGCGCCGCAAAGCGAATATCGGCCCACTGAATATCTGCAAAACTGGGTCGCGTTCTGGTTTGAT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 278761-279027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALA01000393.1 Cronobacter dublinensis 582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 278761 28 92.9 32 ...........GG............... GTTCCGACGTGTCGGATGTGTTCATCCTGTTT 278821 28 100.0 32 ............................ AGAATAGAACTCACTGATTCCAGTGTGCGGGT 278881 28 96.4 32 ............G............... TCGTAGTTAACGACATAGGCGTCGCCACTAGC 278941 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 279001 27 85.7 0 ...T.......T.........-..C... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACTCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAGGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGGCCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACAATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTCTTGATTTTTATCATACGCTGGCGAGGCGCTAAAAAAGGGGATACGGCATCAAAATGCATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : ATCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //