Array 1 4036-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGV01000008.1 Xanthomonas oryzae pv. oryzae strain IXO645 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4035 31 100.0 36 ............................... GCATCAGAACCGGCCGCGCCCTTCGAATAGTCACCC 3968 31 100.0 36 ............................... TTTAAGACAAAACCCGAGTTTGCCGGCGACTGCTGG 3901 31 100.0 36 ............................... TTACCGAGCCGCTTAGCGATCTCGCCCTTCTTGAAA 3834 31 100.0 34 ............................... AGCGGCCGGACGGCATAGTACTTGACGACGACGC 3769 31 100.0 34 ............................... TCTTCACCATGACCGGCGTCGCCATGCCTTGCAG 3704 31 100.0 34 ............................... CCCGACGCCTGCGGATAGGTGGAGCTATCCCCGC 3639 31 100.0 35 ............................... GCATACCGGCGACCGACTTCGAACGCTTCAAACTC 3573 31 100.0 36 ............................... TCGAGCGCCGCCATCCGGCGCTTCGTTATGAGCTCG 3506 31 100.0 37 ............................... GCCTCGTGATTAGGCGCATGCGTGGACGCCCGTACAC 3438 31 100.0 35 ............................... GAGCGCGGCCGGCACTCAGGCATCGCAACCGACAG 3372 31 100.0 35 ............................... AAGGTCCGTCCGTATTACAGCTGACCAACCCAGCA 3306 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3241 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3176 31 100.0 38 ............................... CTCCTCGAGGCGAACGATTGCCTCGGCGAACACAGCCG 3107 31 100.0 34 ............................... CCGTCCCGATACCCACAGTAATTGCATTGCACCG 3042 31 100.0 33 ............................... GGATTACTTTACGAGCACCCAAAGAGTTGGCTT 2978 31 100.0 33 ............................... CTGCGTCAGATCGGCGAGCGGATCGGGCGGCGG 2914 31 100.0 34 ............................... CTGCACCGCCACCAATACCGCCAAGCACAGTGCT 2849 31 100.0 34 ............................... ATGGCCAGAAAAACACATTGACCATGTGAATGCA 2784 31 100.0 34 ............................... AACCAGTGGAGAGGCAAGAATGAATGCAGTATTT 2719 31 100.0 36 ............................... CAATACACCCCAGTCGCGCCAGAGGTGTTGTTAGAC 2652 31 100.0 35 ............................... CAGCGCAACATGGTGACGGTGCTGGCGGAAGAGCG 2586 31 100.0 36 ............................... AACGACAGTGCCAGCGTGGCTGAGAATGCCCCTATG 2519 31 100.0 35 ............................... CACGGGTACAAAGTCTCCATCATCCGTCTCGCGCT 2453 31 100.0 35 ............................... CCAGACCAAAGGAAGTCGTTCCTTTGGTTGAACAA 2387 31 100.0 35 ............................... AACTGGGCATCACCCAAGCAACGCTCAGCGCTACT 2321 31 100.0 35 ............................... GTCCGCCTGGACCGGTCCGGCTGTTGGTACACTGC 2255 31 100.0 35 ............................... GTTCGATGCAAATGGAATTGCAACAGTAGACGCAC 2189 31 100.0 34 ............................... GTCATCGTCGTTCCCGTCCCGATACCCACAGTAA 2124 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 2059 31 100.0 35 ............................... AATGTATACAGGTGAAAATTCAGTGGCGCATCGAC 1993 31 100.0 35 ............................... AGCTGCAAGGGCGCGCACTTGTTTGGCCAACTCCG 1927 31 100.0 34 ............................... CTGCACGCGGTTGAACGTCGTCCACAGGTCCGGC 1862 31 100.0 33 ............................... CTGTCAATGACTCTTAGCCCATGGTTGCGGCGC 1798 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1732 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1667 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1600 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1534 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1467 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1401 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1335 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1270 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1206 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1141 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 1076 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1010 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 944 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 878 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 814 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 747 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 682 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 617 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 551 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 486 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 421 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 355 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 289 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 224 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 59 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //