Array 1 931090-931726 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019801.1 Thermus thermophilus strain HC11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 931090 36 100.0 42 .................................... CTGAAGTGCAGGATGTGGGGCACGCCGTCGGGGAGGGCCTGG 931168 36 100.0 39 .................................... CAAGTCCCCGGACGCCGCCATCGCCGCCGTGCTAAAGGG 931243 36 100.0 39 .................................... CACCCACCCGGTGGGCGCGCGCCCGTTGAGGGTGCGCAA 931318 36 100.0 41 .................................... GTTTCGTACAGGCACGTGGGGCACAGCCCGCTCCTGTCAAA 931395 36 100.0 37 .................................... TCCAGTAGCATCCGCAAGCTCTTCGCCGCCAGGGATG 931468 36 100.0 40 .................................... GTGGCGGGGATACCTAGGGCGGTGAGCACCTTGTGAGTCT 931544 36 100.0 40 .................................... CTATCGTGATGGTGCCCGGGGTGGCGGTGCACCGCCACGA 931620 36 100.0 35 .................................... CACCTCATCGCGAACGATGAGGGGAGAGTCTTTGT 931691 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 99.4 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAAAAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCACCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCTGGTAGCCCCTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCTGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCCCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 932926-933117 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019801.1 Thermus thermophilus strain HC11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ==================================== ================== 932926 40 100.0 36 ........................................ GTAGCCGGGGCCTGGGCCATAGCCGGGGCCCCGGCC 933002 40 97.5 36 .....................................C.. TCTCCCGGAGGGGGCGCTCGTACCGCCCGCTATTGC 933078 40 90.0 0 ................................AT..T.T. | ========== ====== ====== ====== ======================================== ==================================== ================== 3 40 95.8 36 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACAGCC # Left flank : TTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCGCCATCGGGCTCCTCCCCGTTCTCAATCGCGTAGATAA # Right flank : CTTGCCTGTCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTTCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCTCTTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAG # Questionable array : NO Score: 3.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 41323-40118 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019802.1 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 41322 36 100.0 38 .................................... GATGCCTGAGCTGAAACCTGCAGACGAGCAGGACCTCC 41248 36 100.0 38 .................................... CAACTAGGGGGGGAGGAAGGCCCTCTCCCCCCTTGCCC 41174 36 100.0 37 .................................... CTGGAGGACACTCAGCCCATCACCCAGACGGGGGACA 41101 36 100.0 37 .................................... TAGGTGCTCCCGATGGCGTTGACCACCTGGGCTGCCG 41028 36 100.0 37 .................................... TACGTGGCCGAGGGGCGCTGGGGGCGAGCGTACTTCC 40955 36 100.0 37 .................................... CTCCATCAGGGCGAGGAGCGTCTCCAGGTCCCCTCGG 40882 36 100.0 36 .................................... TTGCGGCGTCAGGTTCTTCGGCATACTCCCTCCTTC 40810 36 100.0 37 .................................... GCGCTGTAGGGGTAGAAGGTCGCAGTAGCGCTGTGTT 40737 36 100.0 35 .................................... CAAAATCTGCACCCCCCCCGTGCAAAATCTGCACC 40666 36 100.0 38 .................................... AGTTCCCCTGCGAGGTGGGCAACAGAGCGGACCCCCTT 40592 36 100.0 36 .................................... AGCCTCCCCTCTCCCCGAGGCTCTACGTGGACCTAG 40520 36 100.0 38 .................................... CTGGAGATCCTCTCCGGCCCCATGACCGCCCTCCTCTC 40446 36 100.0 36 .................................... GTTTTGGCTCTTTTTGGTTCGGTGGCTCTGGCCCAG 40374 36 100.0 36 .................................... CTCTCCAGCCCCACCGGGGACATCGCCCTAGGGGCC 40302 36 100.0 40 .................................... GGTGAGCACCTTTTGCCTGGCCTCCTCCCCTCCCCTGGGG 40226 36 100.0 37 .................................... TTCCGCTTAGGCATACGCCCTCCTTCTCCTTCCACCA 40153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 100.0 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAACAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : ACTTCCCAGTCGGGCGGGAGGGAAGCTCCATTCAGGTTGCAAACCTCGTTACTCAAAACTTGCACTTATGCACCCTGGGGATAGTTATGCTCGGGGGACCACTTGAAAGGGGCCGCCGGTTTCCCGTCTGATGACGGGTGCCATGAACCAAGCGGCCCTGTCCCTACTTTGGACCATCCTGGCCCTCATGCCAACCCCCCACCTGCGGGAATCCTTGAAGGCCCTGTTGTTCCTTTTCCTCACCGGTCACGGCAAGGCTAGACCCCAGCACAGCAAGACCAAGTCCCCCTCCGCCCTCTCCCGCTTCCTCAACCGCTACCCCTGGCCCACCCGCGCCCTCATCCGCCTGGTCCGCGAGGAGGCCCAGAAAGCCCTGGACCGGGCCAGGCGGAGAAAGGGCCCCAAGCCCCGCCTCCTGGTGGTCCTGGACCTGGTCACCCTGGAAAAGCGGGGCCACTTCCCCCACCTCCCCCTCTCCTTCTTTCACGGCAAGTGGGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 52192-53673 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019802.1 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 52192 36 100.0 36 .................................... CTGGACCTGCACCGTGGTGCGGCGGGACAAGGCCAT 52264 36 100.0 39 .................................... GTAGTGCTCCTCCAGAGTGGAGCCATCTGGCCGCTCCAG 52339 36 100.0 39 .................................... GTGGTAGAGATCCGCTCCGTGTCTGGCCGCCGGGTCCGG 52414 36 100.0 36 .................................... GGCGATTATCGCGGCGGTGGTGCTCGCCCTCACCGC 52486 36 100.0 37 .................................... TTGGCCCTCCTCACGGGGGCATACGCCTACACCGTGG 52559 36 100.0 35 .................................... ATAATCCAGTCCGGCACGGGCGGAAGCCCGGTCTC 52630 36 100.0 35 .................................... TTCTCCAGGCTCTCCACGCGGAGGGCCCCCAGCCC 52701 36 100.0 37 .................................... TAGCCAAACCCGCCGTTGCCGTCCGTCCTCGCCACCT 52774 36 100.0 34 .................................... TTGAGATGGGTGAGGCATGCGCTATTTGCCTGCT 52844 36 100.0 34 .................................... CAGGACCTTGGGACAGAGGCTCTTGGCGCCGCCA 52914 36 100.0 38 .................................... AGGTGGGGGCGCTCCTTATCGGAGAGGGGCGCCTCGAG 52988 36 100.0 38 .................................... AGGGCATGGAGCTTCGCCCCGACCCTCTGCACTATTTG 53062 36 100.0 38 .................................... TGCTCCTTGTAGGCGCCCTGGTACTTCCGCCGGGCCAG 53136 36 100.0 37 .................................... TGATAGGCGCGCCCCACCTGCCGCAGCAACCTACGCG 53209 36 100.0 37 .................................... CCCGAGGTTCCGGGGGGCACCAGGCTGCCGTCCGGCA 53282 36 100.0 32 .................................... TCAAAGGGTCCCTCTATTACCCTGGCGTGGAA 53350 36 100.0 36 .................................... TGAGGAGGGTCGTCTTCCCCGTGCGGGGCGGTCCCA 53422 36 100.0 36 .................................... AAGGTGGGCGAGTTCGTGGTGCCCTCGGGGGCCACG 53494 36 100.0 36 .................................... AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC 53566 36 100.0 36 .................................... GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC 53638 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 21 36 99.9 36 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : CCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGCTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCGGGGAAGGGCTTTTTCCCCGGTTTCACGGGTGAGGCGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCTAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACCTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCCCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 3 103931-104265 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019802.1 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 103931 37 100.0 37 ..................................... GTCTACAGCACGGGGGCCGGGTACGGGGCCCAGAGAG 104005 37 100.0 35 ..................................... TCCCCAGGCATCCAGTCCCGCCCCTCGCGGATGGC 104077 37 100.0 39 ..................................... CCGCCATCCCCGTGGTGGGGCCGGTCCTCGCGGCGGCCG 104153 37 100.0 39 ..................................... CTCGCCCGCCTGCTCCAGGGGAGGAAGGTGTGGGTGGAG 104229 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAGGCTTCCCAACCCTCATGCTGCCCTGAGCCCAGGGCTACGTAAGCCAAGGCCGCACCCCAGACGGCATGGGGCACGCTGTTTGTCCTTTTTCCCTCCGCCGCGACCTTGAGGTAGGCCTGGAAATCCCGAGTGGCCTTCCCAAGGTCGTGAAGGAGGGCCAGGGCCTGCCCCAGACTTGGGGTGCCAAAGTGCTGGGCAAAGCCCCCGGCTAGGCGGGAAACGGCCTCGAGGTGGTCTTTGAGGGCGTGCCAGGCTCCCTGGGGGTTAGGGGTGTGGGCTTTGGGGTCCATACATCCTATGATGAGGGCAATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGTCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CCCCCAACGCCTGGCCCGGCTCAGGTACCGGGACCGGACGGGGGAGTAGCCCCAGGAGAGCAAGCCAAGCGGCGTTGCCGCCTACGCGGCCCCTCAGCGGATCTGCGCCCGGTAGCACACCTCCCCCGCCTCCCCCGGGCCCACGTTGCCCACCTCCACCCTCACCACCCCGCCCGAGACCTCCCCGGCGTCGTCCCCCTGGGAGGCGGTGAGGTAGAGGGTGGCGCTCCCGTGGCTCCAGCGGATGGCCTTTCCCCCGTAATCCGGCACGGAGGGGAGAGGATCCGTGAAGAAAGGCACCGGGTCGGTGAGGACGAACTGGCTCACGGAGGCTGTGCCCAGGTTGCGGTAGGCCACGCAGTACTCCAGCACCTCCCCGGGCCTCCCCTCCCCCAGGGTGCCGAACCCTGTGCCCTGGCTGACGTTCCGCACCCTCTTCTCCAGCCGGACCTCGCCCCCCGAGACCGTGGTGGTGTCGGCGAGGCTTCGGAGGTCCACCA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //