Array 1 24248-26531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPCU010000022.1 Bifidobacterium longum strain J1101437_171009_B2 NODE_22_length_26631_cov_82.4312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 24248 36 100.0 28 .................................... GTGTCCATCGAGATATCCATAGGGTGTC 24312 36 100.0 28 .................................... GTGTCCATCGAGATATCCATGTGGGTGT 24376 36 100.0 29 .................................... TATCGACACCCATCAATTTCCGTGGATAA 24441 36 100.0 28 .................................... GCCTGCACGATGATTAAACGCGGCGACC 24505 36 100.0 28 .................................... CCATGCACCGCTCTATGCGTCGACCGAC 24569 36 100.0 28 .................................... TTATCGGACAAACACCCTCTCACCCTCG 24633 36 100.0 28 .................................... AGATGGCAGTGGTTCCAATGACTCTGCT 24697 36 97.2 28 ..G................................. TCCACCGACGTGATGGACAACTACACGA 24761 36 100.0 28 .................................... CCACTGGCTGTCGCCCGCCGCGCCGATC 24825 36 100.0 28 .................................... TGACGGCTGCGGATATGAGGCTCGCCGT 24889 36 100.0 28 .................................... ACGGTCATGTTGGCGACCTGCTCACCAC 24953 36 100.0 28 .................................... ATGCTCACCGTCAGCCTCGGGTCGAAGG 25017 36 100.0 29 .................................... CGACCACAAGCGCACCGCCAACCTCGAGC 25082 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 25146 36 100.0 28 .................................... GAAAACGAAGATGAGACCGTGCCTGATG 25210 36 100.0 28 .................................... AAAAATCAGGTGTTAAACATGGCGCTAA 25274 36 100.0 29 .................................... CTTTCTATATTAATAAATGTTAAGGCTTA 25339 36 100.0 29 .................................... AGGATGCGGGCGAGGTCGTCGTGCTGAAG 25404 36 100.0 28 .................................... CATGGCGAGCCGGTGTGCGTGGAATGCA 25468 36 100.0 28 .................................... TGTGTCCGGAGCCGAAGCTGCCCGACCA 25532 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 25597 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 25661 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 25725 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 25789 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 25853 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 25917 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 25981 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 26046 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 26110 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 26174 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 26238 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 26303 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 26367 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 26432 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 26496 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 36 36 99.9 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCTTGCGCGTACTGTGCTTGTATGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACGATGATTTTTCGGGTTTAGGCAGAGCATGCCGACCACGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 276791-276177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPCU010000001.1 Bifidobacterium longum strain J1101437_171009_B2 NODE_1_length_277251_cov_81.7985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 276790 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 276726 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 276662 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 276597 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 276533 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 276468 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 276404 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 276340 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 276276 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 276212 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 98.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ACACCCTGCGGAAAACCCGCTGCCTACACTGCGGAAAAACACCGCTCACAAAGCGGACGCCAACTTGCTAAAACACACATCGGCCGTGCCGACCTGATCATACTGGACGAGTTCGGCTACGTACCCTTCGACATCGACGGGGCGCGCCTGCTCTACCGGATCATCGCGGGCAGCTACGAAAGACGGAGCATCATATTCACCACGAACATCGAGTTCAGTAAATGGGGCACGGTCTTCGCGGACGACAAACTCGCCGCAGCGATCATCGACCGCATCGTGCACCACGGGCGGCTCCTCGAGTTCACCGGCCAGAGCCGCCGCGTCAGTGAGGCCCTCATGTTCGGCAGGAACACCTCCGCGCAACCGGAAAAATAAGGAAAATGCATGCAACTGCCTAAACCCGAAAAAAATACATGACTAAACACGAAACACCGACTTGACGAAATACACTTGTAGGTGG # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //