Array 1 88864-87066 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWHA01000022.1 Bacillus canaveralius strain M8-28 18848_M8-28_1__paired__trimmed__paired__contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 88863 29 100.0 37 ............................. GTGATTCTTGCTTTGCTTTCTCTTCAGCCTCTATCTT 88797 29 100.0 36 ............................. CCTAAGAGTTGTTTAACACCATCCCATAATAATCCC 88732 29 100.0 38 ............................. ATTTAATATCTTCTATTATTATTGGGCTTGAACTATTC 88665 29 100.0 38 ............................. TTTCTTATATCAACCTCCCTAATGCCCCAAAAGGCCAT 88598 29 100.0 36 ............................. TAAAAGAACTGCAACGTGTAATGGACAAATACGAAT 88533 29 100.0 37 ............................. AATTAAAAACCTCCTTTTCCACTCAGAACAACGACAG 88467 29 100.0 37 ............................. TCATAGGATTTGTTTGTTCCAATAGGGCGAACACGTC 88401 29 100.0 37 ............................. AAGTTATTTTCATTGCATGCAGACTGGCTGCATCATA 88335 29 100.0 37 ............................. CCATAATGTCTTTAGGTGTGTTATAAGTGAACGTTAG 88269 29 100.0 35 ............................. CGATCATTTTGATGATGGAATTATGTTTTTTGACC 88205 29 100.0 37 ............................. GAGCTTCATGCATTATAGTTCTTACTTCTGTTTTTTT 88139 29 100.0 35 ............................. TGTCTATTCCGGCAGCAAGGGAAGCCTGGTTGATT 88075 29 100.0 36 ............................. GAGAGTATGTTTTCAACAGATGCTGAGCGTGATGTG 88010 29 100.0 36 ............................. TCCTATAAATACTGTAAGGTAACCCCCAACAATTCA 87945 29 100.0 35 ............................. GCAGTTTCTTCCACTCTGCTTGGATATCTTCTCGG 87881 29 100.0 37 ............................. ATACTCTTGGAACACGAGTTTTTGAAAAGGGGAAACC 87815 29 100.0 36 ............................. AAGAACAAGTATTCCAAACGAGTTATCTCACTTCCC 87750 29 100.0 37 ............................. AAAGTGAGAACTTTGAGTTGACCATGTATGCCGAAGG 87684 29 96.6 37 T............................ TTGAAGCGATGAATGATATTTGTGAAAAAGCTAATGC 87618 29 100.0 38 ............................. ACATTCCGGTTTGCTCCATGTCAACAACCACTGGAAGC 87551 29 100.0 38 ............................. GGGCAAAAGAACGATTGATTCTCTCGTAAGCTCAAAAC 87484 29 96.6 36 .......................G..... TTGAATATCCCTCCTGATAAGATGATGCACCCGACC 87419 29 100.0 36 ............................. CAAGATAAAATGGTTCATGGCACCGCGGGCAATTTG 87354 29 100.0 36 ............................. GTGACTTTTACGGTTAATAACAAACCTAATTCGTCC 87289 29 100.0 37 ............................. TTATCTTAGCAACTTCAGCTTGTGTGAGGTCTTTTTC 87223 29 100.0 36 ............................. AGGCCTTGGCACTGCTGGGCGTTCCGGAGGAAGAAC 87158 29 100.0 35 ............................. GGACAAGCAATAACGAGGAAGGTTAGCGTCAATTC 87094 29 93.1 0 .C.......................C... | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.5 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TCCCTTCTAAAACCTTCATATCTCTGTAAATGCTGCGCACCGATGTTTGGCAATTTTTCGCCAGCTCTTCTGCTGTGACCGAGGCATGATTGTTTAAGTATGTAATTATGTAAAACAGTCTCTCAACCTTTTGAATGCGCGACATCGGTTCACCCCTTTACATAATTCCTTCATCTTTAAATTTTAGCATACATCTCTCATTATTTGAGACAATCACCAGAGAGGAGAAACATTTCTTATGCTAAAATATATCTAAGGAAGTTTTCAATAAATACATCTCCGTTGGGCTTACACCTTGTGAAATAATTGATGCAATATTGCAGCGAATCGCGTTTTGAGAAAAAAAGCCTCCAAGGCTTATAGCATAAGGGGTTAAAGCGCTTTTTGCTTTATGCAGAAAACACAACCACCGATCCGCTGCAAACAGCAAAATATTCATATTTAAAACACTCCTGCAATCCATTGGTACATACGGCTTTTCAATTTGCTATTATGCAGGG # Right flank : TCATGTAGCTGTAAATGTGCCAATTCGTGGGCGCACTTATCTGAATGTGCGCGGGATATGAGTGCATATGATTTCACTATAAAGGGAATGAATGACGACGTATTTAAAAACGAGCGATACAGTCCTCAGAATTAAAACGGCTATGGCTTTTAAATTAGGCGACATCTAAAATCCCCTATAATTCCAATTTTCCATTTGAATACATAAAAGTAGGTCCTTTATGACGCAAAAAAAGCCCCAAACAAGCGACAATAAAACGTGTGCGCCTGTTGGAAGCTTCTGATAGTCTCTATTAAAATTCTGCCGCCATTTCTTTGATCTTTTGTTCAGCTTCTTGATAAATTAACTCTTCCTTGGCAGGATCGAGGTGCAACCCTTCAATAATAAACGGCGTGAAGCTTTGGATGCCCATAAAGTTCATGACAGTTTTTAAATACTTTTGGGAAAATTCCATCTCAGCAGCCGGCCCCACTGAATAAATGCCGCCGCGCGCTTCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 99308-98882 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWHA01000022.1 Bacillus canaveralius strain M8-28 18848_M8-28_1__paired__trimmed__paired__contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 99307 30 100.0 37 .............................. TGTTCATCCACAAATAATTGAGCTTCTTTTAGGGATA 99240 30 96.7 35 A............................. CACCAAATCATTTTTACAAGAACAGCTGGAGGTTG 99175 30 100.0 37 .............................. TTAGGAGGTGAAAGAACCGTTATCCTTTCGCTTTGCC 99108 30 100.0 35 .............................. GTCCTAAACCTGACTAGGACATTAAATATATACGG 99043 30 100.0 37 .............................. AGGATGGATCCGGAATGAGTACGGTATCGCCATTAAT 98976 30 100.0 35 .............................. GCGAGATGTACTAACATCTAATGATATGTATTTCG 98911 30 96.7 0 A............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.1 36 CCTTTATATCCCACTACGTTCAGATAAAAC # Left flank : TTA # Right flank : CCTCAATTTCACCACAAGAAAACCCTTATGTATCAAGGGTTCGATCAGCTTCTTGATATAACTAGCTATTTCAGTTTTGCAGCGAATCGGTGGTTGTGTTTTTTGCTTAATTTTAAAAAGCAGCTCAATCCCTTCTCAATCAAGGGTTTAAGCCCGTTTTTGCCAAAAAGGGATTCGCTGCACTTTATTAGTGCTTATTTAATTTTATTTTAACACGTGCTATTCTTACCAGCTAGAGAAATAAATCAACAGGATTCTTCTCCTGACCATGGACGACCTTCTTGATATTCCGAGGATTTTTGACTTGATATAAATAAACTGAATCCTCATTTTTCTTTATTATTTGATTTAATTCTGCCAGACACTTTGTTAACTTTCCAGTTGAGATTTCTCCCTCGAATACTGAGTTTTGAGTCCAATCGAGATATTCACGAAGCTTCTTACAAACCTTCCCAACTCTTTTTTCTCCGACATCATACGTTATGATCACAAACACTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTATATCCCACTACGTTCAGATAAAAC # Alternate repeat : ACTTTATATCCCACTACGTTCAGATAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 7278-7031 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWHA01000047.1 Bacillus canaveralius strain M8-28 18848_M8-28_1__paired__trimmed__paired__contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 7277 30 100.0 42 .............................. TTGGCACGTGTCAGCTGCTTTAATTTAGATTCGTTATCCTTA 7205 30 100.0 42 .............................. TTGGCACCCAGGAGAGAAGAAGATATTAGATTTTCGCGATAT 7133 30 96.7 43 ..........T................... GTTTGCACGGAATATAACCCGAATTATCTTTCTCTCTTATAAA 7060 30 76.7 0 C.....................GC.CCCA. | ========== ====== ====== ====== ============================== =========================================== ================== 4 30 93.3 43 GGCCTGAATACTTAGCAGAAATAATGATGA # Left flank : TTTCCCCATAACGCATATGATTGAATATCTGTTTGTTATGGGGGGATTTTTCAAGAATGATAACAGGAGAAATGCTGGTCAAATATTATGAGCTTAATAAAAAGAAAAAAGAAATTGAATTGGAAATGAATCAATTAAAGGATACATTTCATCACTACTTTGATGACCAGGTTGGATCCAATGATAAAGGTGAAATTACAATAGATGGCTACAAACTCCAAAGGCAAATACGAAAAACAGAGAAATTTAATGAAGAAGAAACAGTAAAAAGGCTAGAGGAATTACAAATGACCGATCTCATTAAAGTAGTAAAAAAACCGGATGATATAAAGATTAAGTCCGCGATTAACCTCGGACTTATAAAAACAGAGGATTTCGAAGGTTGTATCTTATCGACTACTTCACCGGCGATCACTGTAAAACCGGTGACTCCGAGATAGAGAGAAACAGAAATAGAATTTAAACTGGAATATCTACGTCACATGAGAATATAGATTTTT # Right flank : TTTTCAAAAACAATCATAAACTATGCAATATTTAAATACCATTGGTCCAGATTCAAACACAGCACGAGGAATTGAAGAACACTTTACAGATAAGATAGGCGCTTCACACATCATACGATGGTCTATATATTTTAGTAGAATTACACATAGAATAGTAGATATCTATAGTTTATTAGTGTAAAGTATAGTAAAGTAGGGTAAATAATTACCAGTAGTCAGGTTAAATATTTCTATTCTTGGACAGGCTTACATATATATGAAAGTATATGGGGAGGTGTCCAATGAAGAAGAAGGGTGATGACGAAAAAATGAACACAACAGCTATCAGAAAAATTCAAAAAACTGAACGTAAGAAGAAGGTCCAAGCAAGTTTTGCAAAAGCAGTTGCACGCAATGGCAAAGCTTTGGAGAGACTAAGTAAGAATTAATGCACATTGAGTATCTTAATGTGGAAGATGTAGAAGAGCTACACGATTTAGCACTTGCTGAATATGGTGGTT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTGAATACTTAGCAGAAATAATGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 20877-18171 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWHA01000053.1 Bacillus canaveralius strain M8-28 18848_M8-28_1__paired__trimmed__paired__contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 20876 29 100.0 37 ............................. GTGTGCGGCTGCCAATTACGGACAGGGGAGAGCTCAC 20810 29 100.0 37 ............................. GTTTCTTTATGTGTGTTGGTATAGGTTCTGATTTCGT 20744 29 100.0 36 ............................. TTGTCAATGGCTTCGGATACTAACTGCAAGAATTTT 20679 29 100.0 37 ............................. CAAAGATGGAATCATACGCTCAATGGGCAAAGTCATC 20613 29 100.0 38 ............................. GTGTAAATGGCATTGCTCCCCCCTATACAATTCGGGTA 20546 29 100.0 35 ............................. TCAACTGCGTGTTATTTTGGAGAATTGTGCAGCAG 20482 29 100.0 36 ............................. GTGGTTGGATCAATTACAGCTTTAATAGCAGTTGTC 20417 29 100.0 35 ............................. CCAAAATTAGCTTGCGCGAGTTATATCCGGTAGAA 20353 29 100.0 35 ............................. AAATCCAAACCAAATACAACAAGAAAAAGGCAACG 20289 29 100.0 37 ............................. TGAACTTTGTCATATACAAACGACTAGAAAAGAAAAA 20223 29 100.0 35 ............................. TTAAAATAACGATCAACATATGTTTCAAGTTGTTC 20159 29 100.0 36 ............................. ATGTGACGGGTCGACCTTCTTGCACTTCCAAACGTG 20094 29 100.0 37 ............................. GCGGTAATGTGTTCTTGAAAGCAAGACTTGAAGCGTG 20028 29 100.0 34 ............................. AAGTGGTTTCATCACGTTGTAGGAGATAATTCTG 19965 29 100.0 35 ............................. TTAAAATAACGATCAACATATGTTTCAAGTTGTTC 19901 29 100.0 36 ............................. GAGTCCGAAACAGATACAGAACCGCCAAAATCAGGC 19836 29 100.0 37 ............................. TTAATAATTCAATCTTATGAGCGTTATTTGCCGACAG 19770 29 100.0 36 ............................. ATGTGACGGGTCGACCTTCTTGCACTTCCAAACGTG 19705 29 100.0 37 ............................. AAGTTTATAGGTGAAGAATATTTCGACAGCGTTGCGA 19639 29 100.0 36 ............................. TATAAATTACACGGTCAAAACATTTTTGTCCTGCAC 19574 29 100.0 36 ............................. ATCGGCAGACCAATCATAACCATACTCATACATATC 19509 29 100.0 35 ............................. GTTAATAGTGATGACCCAAGTATCCTGATAATTGG 19445 29 100.0 37 ............................. GAAGAAAAACACTTGTATTGGTTGCATTCAATTCCTC 19379 29 100.0 36 ............................. CTGAATGAATCCTCACTCTTGCGTTCACGTATGTCA 19314 29 100.0 37 ............................. TAATTTCGTAAAAAGCCCCGTGTTGTAAATCTTCGTC 19248 29 100.0 37 ............................. CAAAATAGACCGTTGCAAATTTTGGGTGAGTGGCGAA 19182 29 100.0 36 ............................. AGGGCTAAGCAAGCAACATCGAATCGCCATTTTAGA 19117 29 100.0 35 ............................. GAAACTCAAATAAAGAAGAATAGCGCAAAAATCGG 19053 29 100.0 37 ............................. TCAAAGGATGGGTATTGGCTGTGGTTAACGCCATTTT 18987 29 100.0 35 ............................. GTTAATCCCGGTCTTAGTATTGGCATTGGCTGGAG 18922 29 100.0 38 ............................. ATTCTTCCCCTGCCTTATTATTATTGGATTCTCATTGT 18855 29 100.0 38 ............................. AAATATAAACAGCATCTTAGCAAAGATGGAAAATGGTT 18788 29 100.0 36 ............................. TATTCATCAAAGATTGAGTTTTGTTCGTAAAGGGAC 18723 29 100.0 37 ............................. CAATAGAACATGACTTTCTTTAAATCATTTCCACCTG 18657 29 100.0 37 ............................. AAATATTAAGCGTTGCTCTATCATCGGTCAGAGTTGC 18591 29 100.0 35 ............................. CAATAATGCAGAACTTGCAACTATGTTTCTACTGA 18527 29 100.0 38 ............................. TTGTTTACAGAAGCTATTGTGAGCTGATTTACGCCTTC 18460 28 86.2 36 ...................A....-..GT CAATTTACCTTTATTGTTATATGGTATTCTAGCTTT 18396 29 96.6 36 .................C........... ATGCAAGGGCCGGTTGAAAAAGTTGGTGAAGCATTC 18331 29 89.7 38 .......T.....A......A........ ATCAATTTCTCAGCCTCACGCCTAGCAAGTAGTAGCTC 18264 29 100.0 37 ............................. GCGCCTCAAGCGCTTAAACGAAACTAAGGATATACTG 18198 28 82.8 0 .....T......T.......-..G.T... | ========== ====== ====== ====== ============================= ====================================== ================== 42 29 98.9 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : ATCTGAACGTAGTGGGATATAAAGGTTAACACTTTTTGCATATCCTCAATCTTATTGGC # Right flank : ACAAAATTAACGATAATTAATAGAACTTCATGTTCTTCATACGAAAATGTTTTATTCACAAGTAAGGGAACAAATAATATTGCTACAAATGAAAGAGGTACATGCTTAGTAAACATCGATGATTGAAGAAGACTTTAGGATTAATGAGTGTATCGTTTTCAAATTACGGAAAAGTAAAATTTTATTACTAAAAATGATCGGAGGATGTATTTTTGCGTATCAAAAAAGGGTTAAATCATTTCTTGTTTTCTGTGTTGGATTTAGATAAGTCTATTGAGTTTTATCAAAATGTGTTTGGAGCCAAACTTTTAGTTCAGGGGAAGAGTACAGCCTATTTTGACTTCTTGGGGATGTGGCTGGCCTTAAACCTGGAAAAGGATATAGATAGAAGTGAAACAAATGATTCTTACACCCATATTGCTTTTTCACTCGATGAAGACGATTTTGAAAAAATGTATGAATACTTAAAAAGCTTAAACGTAAATATTCTGCCCGGCCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 90468-82645 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWHA01000019.1 Bacillus canaveralius strain M8-28 18848_M8-28_1__paired__trimmed__paired__contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 90467 32 100.0 34 ................................ GATTTCACGGCGAACGCTAAGCTGGAAAAAGCGG 90401 32 100.0 34 ................................ AATTATTATGAACTATTCCACTCTATAACGAAAA 90335 32 100.0 34 ................................ GTGAGTATCGCATTATTTACGTTGAGCAGTACAA 90269 32 100.0 34 ................................ TATCTTCTCAAAACGTTGTACATATTCTGCAGTA 90203 32 100.0 34 ................................ CTAAAAGTGCTGTTGCAATGATTGGCACTAATCC 90137 32 100.0 34 ................................ GGCTTAAATATCCGTACTCAATCATTAGGGCAGG 90071 32 100.0 34 ................................ TGAGGAACACGACAGATTTGGAATATGCTGAAGG 90005 32 100.0 34 ................................ CCCTGACTGTGGTTTATCAAGCAATTGACCTGAC 89939 32 100.0 34 ................................ AACTAATTCGACACCATCGCATTGAACCCAATTT 89873 32 100.0 34 ................................ TTGATATGTCGAAGATTATTGAAACGCCCAGCCC 89807 32 100.0 34 ................................ CATACGGCATGGGCCACAAATTCAACAGGTACTG 89741 32 100.0 34 ................................ TTCAATAAGAAGTTTGGAAGGTGGAAAGCAAACC 89675 32 100.0 33 ................................ AATACCTTCGGTTGTCGGATCCTGAACGACACC 89610 32 100.0 34 ................................ CGTGTAATCGTGGAAGGCAACCGAATCATTGCAC 89544 32 100.0 34 ................................ AAAGAGAGTTGCTTCCCCAGCAAGGTTGGCAGCC 89478 32 100.0 35 ................................ ATTTAACTTTATTTGTCCCGATCCATACAAGTACG 89411 32 100.0 35 ................................ GATATAGGAAGCCTGTTTAAGCTTGGCTGCATCAC 89344 32 100.0 34 ................................ AACGGAGAAAGTAAAGACTATTTAGATATTGCCC 89278 32 100.0 33 ................................ AGCTGGCTTTATACTTGACAAACGTTTAGACAA 89213 32 100.0 34 ................................ GGCACCTGTTCGGCACCTGAGTGCCGCTGGTGTC 89147 32 100.0 34 ................................ ATAGATTGAATGAAGTAAATGCAAATCAGGTTCC 89081 32 100.0 34 ................................ CGATGATTTCTCCGATACTTTCCGCAGCCATGAT 89015 32 100.0 34 ................................ TAACTCAACATAATGGCCCAAACTGATTTGTTTG 88949 32 100.0 34 ................................ CTAACAACGGGCAGATCACAGAAAAAGGTTACGA 88883 32 100.0 34 ................................ CGGTTATCTTGCAAATCGCAACTACAATCTTACC 88817 32 100.0 33 ................................ TAATAGACAGCAAAGGATATTAGAAGCGATTAA 88752 32 100.0 33 ................................ AATGACAATTGTTTTAATCCCTGTGTATTCGAT 88687 32 100.0 34 ................................ AGGTGAGATATAAGCGCCAGCCTCGACCTCCGTC 88621 32 100.0 35 ................................ AAATTTTTTATGTCTGCCAACCATCAAAAGGCAGG 88554 32 100.0 34 ................................ TTGTAGACCATTAGCGACTGCGCCTGGATCCGTA 88488 32 100.0 34 ................................ AAAAATGCTTCGATATTAATTCGATGCCAATATT 88422 32 100.0 34 ................................ GGAAAAGCCATGATTGGGATCCTTTCCGTCTTTG 88356 32 100.0 34 ................................ TGTACTGGGTGCACCATATTTCCCACTATTCATC 88290 32 100.0 32 ................................ TCCATATGAAGGAAATGGCGAAAATATTGTAA 88226 32 100.0 33 ................................ ATCGAGCATGCGAAGGATTATTGCAATAACACA 88161 32 100.0 34 ................................ ATTGTAATAATTATTGTGAATGATTCCTCAAATC 88095 32 100.0 34 ................................ TTTATGATAAAAATTCGGAAAACGAACCAAATGT 88029 32 100.0 34 ................................ TGGTTGAAGATGGTTCTTGCGTTAATGGTGATTT 87963 32 100.0 33 ................................ AAAATGATGGAGGAAAGTACAGATGTTATCAAC 87898 32 100.0 34 ................................ TGCAATAGGATTAAGTATCGCTTGATTGATTGTT 87832 32 100.0 34 ................................ TGCTCTTGACGAGAAAGGAATGTATCAGTGAACC 87766 32 100.0 34 ................................ ATGACATCGCCGGGCAGACATGGGAAACGGTATA 87700 32 100.0 35 ................................ ACATTTGAGAATGCCTGCTAAAGGGTTGGATAACG 87633 32 100.0 35 ................................ ATAGTAGGCATATATTACGAACTCAAGGAGGTATA 87566 32 100.0 34 ................................ TCCCAAATAATTCGTTTAACATTACGAGCGAATC 87500 32 100.0 34 ................................ CGTACTGACTGGGAGAATGAGCCAACTCCCGGAA 87434 32 100.0 34 ................................ GGCAGAACAGAAATATAAAGTCGCCTTGGCTGGC 87368 32 100.0 33 ................................ TCCCTGCAACCCCGATTCGAACTACAGGAAGCG 87303 32 100.0 34 ................................ ATTTAGAAATTCTTTGTCCGAAACAGTCACAGAA 87237 32 100.0 35 ................................ ACCGCGCATTATGCTTGTGAGGTAAGCTAAGACTT 87170 32 100.0 35 ................................ ATTATCATGTTTTGGTACGGCTCACCGTTGTCATT 87103 32 100.0 34 ................................ TTTCAGTTAGATAAAGACAACAACCCAATTGATT 87037 32 100.0 34 ................................ ACTATACATAATGAATACTCTCTAATTCTTCTTC 86971 32 100.0 35 ................................ TTCATTCGGATCACCGCCTAGTGACTTAAGATGGC 86904 32 100.0 34 ................................ GCTTAATAGCTGCTCTTATTTCCGGGACTGTGTA 86838 32 100.0 33 ................................ TCGAATAGTTTTCTCTTAATCTTGAAGTCTGCC 86773 32 100.0 33 ................................ ACCTTGTGACTTATATGTGCAATGATGAGGTAC 86708 32 100.0 34 ................................ TAACACGCTATTTAAAACAAGCGCGGTTTTCCCC 86642 32 100.0 33 ................................ ACTGATTTGGCGAAGCGTAAGATGTTAGTCTCA 86577 32 100.0 35 ................................ TTCGATGCCTGATATAACGGCTTTATCAGCATTAA 86510 32 100.0 35 ................................ CTGGGCCTCGAACTCGTACATGTAAGCGGACCTGA 86443 32 100.0 34 ................................ CTCAATCTGCCGTTTAAACTTATCTGGGAATAAA 86377 32 100.0 34 ................................ CAGATGGACGCATTTCGTTGGCAAGAAGTCTCTT 86311 32 100.0 35 ................................ CACGATAATCACCCACATTAACTGTTCTCCAAAAA 86244 32 100.0 34 ................................ TCTGTCGGCCGGACCGGATGCTTCTGCTTGTATT 86178 32 100.0 34 ................................ ATGTTAACCCACCTTTAATTTTAATGATTCTATT 86112 32 100.0 34 ................................ CGAAAAGACCAGTTTGAACTTGTAATTGTAAATC 86046 32 100.0 34 ................................ TCTATCCGAAAGTGACAAGTGGACGTCCATCCTC 85980 32 100.0 34 ................................ CGCTGCTTTAACCCGAATGTGGAATGTGCCTTGA 85914 32 100.0 34 ................................ GACTTCCACAACGATTAAGGCGTAATACTCATGA 85848 32 100.0 34 ................................ ACACTGTTTATTGTTCCTTCTTCAGCATTTACTA 85782 32 100.0 34 ................................ ATCTGCTTTATGCAGCAACATGGGGGAAACAAAC 85716 32 100.0 34 ................................ CCCCCTGTGTATTGTGTATAAACGTTGTCTTAGC 85650 32 100.0 34 ................................ ATTAGAGAAGTGTTGTATTGTAAGTAGCCATTAT 85584 32 100.0 33 ................................ CAGCATGCGCCACTCTATGGACCCATCGGTCAA 85519 32 100.0 34 ................................ CGAACAAATCGCTTATTGCACTATCGATAGTCTT 85453 32 100.0 34 ................................ AAAGAAAGAATATGTTTTCGGCAGCTTGTCAAAC 85387 32 100.0 35 ................................ TCTTTAGTGTGGATCACGACAACGCCCTACAGGAG 85320 32 100.0 35 ................................ TCAAATACCACGCCAAATGACTGAATGGTGTTAGG 85253 32 100.0 34 ................................ AAATCACTCAAACCGCCATTGCTCACAGACGAAG 85187 32 100.0 35 ................................ TATGAAACTATTACTCATTTCATGCGCCAGGCGGT 85120 32 100.0 35 ................................ AGTTTGAGGAGATCAGGGAGGCCCGGAAATACAAG 85053 32 100.0 35 ................................ GACTTGGATGTTGTTTATTTAAATAATACCAATGA 84986 32 100.0 35 ................................ ATACTATAAATAATGAACTGGTATCTTATAGTGTA 84919 32 100.0 34 ................................ ATGGAGGCTTTGAACTCCTTAGAAATTACATATA 84853 32 100.0 34 ................................ AACTATTAAGCAAAAGTCAATGGAAATGGATGAA 84787 32 100.0 35 ................................ ATACTATAAATAATGAACTGGTATCTTATAGTGTA 84720 32 100.0 34 ................................ AACTATTAAGCAAAAGTCAATGGAAATGGATGAA 84654 32 100.0 34 ................................ ATCGCAACATACGGGGAACAGCGTATCAAGAATA 84588 32 100.0 34 ................................ CTCAATAATGATTTGGAACATTTTTTTCGCTGCT 84522 32 100.0 34 ................................ TTGTGTTCGATTTAGAACAAGGTACAGGTCAATA 84456 32 100.0 34 ................................ AGTTACCTGTTCACTTTCTTGATAGTCAGACCAC 84390 32 100.0 33 ................................ AATAGTGAAAGGTTCTTTCGTGATTGCTTGTAG 84325 32 100.0 33 ................................ ATGTGTACCTCCTATTTTGCTTGCATCAGATAT 84260 32 100.0 34 ................................ ATCTGACATGTACTTATCTATCCGGTCAGCTAAT 84194 32 100.0 33 ................................ AATAAAGAGGATAGGTACTGATATGGGTGAAGC 84129 32 100.0 34 ................................ AGCTTGATTCGGTGATCAACCCAAGCAGTGAGGG 84063 32 100.0 34 ................................ GAATTCGGCAACTCATCTCCCTGGACATGAAACT 83997 32 96.9 35 .............A.................. AGATCATATGCAGGAACTACTGAAGCTGGTGGCGC 83930 32 100.0 33 ................................ GATGCAGACGAGGTTAAAGCCTGGCAGGATAAA 83865 32 100.0 34 ................................ AGGAGTGTCAAGCTAGACATTTCGCTCTTCATTT 83799 32 100.0 34 ................................ CAATAAGAGTCAATCACCTTTCCGTCGTCGTTAT 83733 32 100.0 34 ................................ GTAGTTTAGGTTGCGGATTGGGATATTAACTGGT 83667 32 100.0 35 ................................ TAAACAGTAAAGCAAGGGGGAAAGAGGATGTCCGT 83600 32 100.0 34 ................................ CCTTAAAGTGTATTTTAATATGTTCCCTTTACAA 83534 32 100.0 34 ................................ TGTTTGTTTGACGTTTGCTGTTGCAATACTACCG 83468 32 100.0 33 ................................ AAAGTGTACGAAGAGAATCTTTCACTGGCCCAG 83403 32 100.0 34 ................................ AGCAACAACCGTATATTATCATCACTTACCGCGA 83337 32 100.0 34 ................................ ATAATTGACCCCCTAATAAAATAAAAAGGACACC 83271 32 96.9 33 ...........................A.... ATTACGTCCGCTGTGGGATACTGGCTGCAATAG 83206 32 100.0 34 ................................ TGCAGATTGCAGAGCTGGTTAACCAGGGTTGGGA 83140 32 100.0 34 ................................ TCATCGATTTTTTCTTTGTATAGCCTTCCTTTGA 83074 32 100.0 34 ................................ CTCCAACTGCTTATCTGTCATTACGTGTATGGCA 83008 32 100.0 34 ................................ TTCCTCGTTTTTAATAATTGTAAAAGGTTTGAAG 82942 32 100.0 34 ................................ ATATCATAATCGTGCTGAATGGCTTCAATGTCAT 82876 32 100.0 35 ................................ ATAAACCTTTATGCCGTCTCGCGTTTGCCATGCTT 82809 32 100.0 34 ................................ AACACAAAAGGCGATTTTTACAGACGGTATGAAA 82743 32 96.9 34 ....A........................... TCGTGTAGCTTAGTCCAAACAGTCACAGGCTGAC G [82719] 82676 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ =================================== ================== 119 32 99.9 34 GTCGCATCCTACATGGATGCGTGGATTGAAAT # Left flank : TAGATGAGTACCCACCATTTTTATGGAAGTAGGTGTCGCATTTGTTAGTATTAATTACGTATGATGTTAGCACGGTTAGTAGTGCAGGACAAAAAAGGCTGCGGAAGGTCTCAAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTATTTGAATGTATAATTGATGCCACTCAATTTGCCACTTTAAAAATAGAACTTGCTTCTATTATTGATGAAGATAAGGATAGTCTCAGATTCTATCAGTTAGGAAATAATTACAAGACCAAGGTAGAACACATTGGTGTGAAAGAATCAGTCGATTTGGAGAATCCTTTAATTTTTTAGTGCGAATATATAGTGCACATTAATTTCCAGTAACATTCGCACCTAAATTTTTATCTGGTATTACCGAAATTTGTTTTTTTTATTATTAAGTTCTTTATTTAATAAAGAAAATAGTGTGTTTTTGATCAGAAATTGGGTATTACTAGGTTTTTTTGATCGAAAATCGCT # Right flank : TGAACTTTTGAATCTTTGGATTGTTTAACATGAGGAATGCTCATGTGATATGGATAAGTGAACTTATTTTGATAGGACAATAATCCACGAAAAGGCCCCGCCCAACAAGTCAGGTGAGGCCTTTACAGTTATTTCTATCCAATCGTCCACTTCTCTAAATCACAAACAACTTTGCCATTTGAATAAAAGCTGATACTTTCGTCCTCAACATCGGGAAAATATCTCGCTGTAAACACTTCTTCTCCATCATTGACAAAAACCTCGATAGAAGAGGTATCGAGAAAGATCTGCAGCTTGCCAAGCTTGTCCAAATGACAAGCTCGTTGTTCAATAGTTCCATCTTTAAAGCTTTTTCGTTCCAAAATCAGCTGTTTCGAACCAGCATGATATACAAGGGCTGCGTTATTTCGCAAGCTGATTTTAAATGTTTCTGCTTCATGCTTCTTGAAGTTCAAGATCAGTTCAACTGACCTTCCGCCAACTTCTTCAAAAACAACATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //