Array 1 242615-242049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 242614 30 96.7 38 ..........................G... TTTGAACCTGATGGCCGCAGTAATACCTATCATTTTCC 242546 30 96.7 36 ..........................G... GAGATTCGACGGGAGGAACGTAAACCGGATTGGAAC 242480 30 96.7 39 ..........................G... AGGCTCAGGTTGATCCGTTTGGTCACCCATTGTCTATGA 242411 30 93.3 40 .................A........G... TTTTTGTTTTCGTGTTGTTGAAGTAGGCGAGGGTCATTTC 242341 30 100.0 38 .............................. TTGGTTTGGATCTGCTTCCAAAGCCGATCCGACGTAAC 242273 30 100.0 39 .............................. CACAAGCTTTTCCTCGGGCATAACGTAGAGGGTGGTACG 242204 30 100.0 38 .............................. GTGTCAGCAAGCCATCTCCAGCCGGCGGCGGAGGCGTT 242136 30 93.3 26 ..........................T..T GCAAAAATGGATAGCGCTTAATTTCT Deletion [242081] 242080 30 83.3 0 ....C...T..C.....AG........... | GC [242065] ========== ====== ====== ====== ============================== ======================================== ================== 9 30 95.6 37 GTTTTGAACGTACCTATGAGGATTTGAAAC # Left flank : TCAATCCGTTTTTCAAAACATGCCGCCCCTGTAGTGGATATTGTTCTTGAGACCCATGTCTCTCCTAATTGGACATATCATGATTGATTATACTGGCAACTATCATAGAAAAAACTCGGTCAAAACCAAGGTAAAAAGCCGTTTATTATGGCTCACTCCATTTAATGCTAAAAAACTCCACGTAGTTTGTTTCGCTTCTAATTTCAGACATGATCGGGGTTCGCTAATTTGACACTCAACAAAGGATTGTGTTATTTATTTGCTTTTAAGTCCATTCAAGCTACAATATGCTACAGGTAAATAATTTTTATAGCTTGGAAAAAAGAAGGCAAATCATTATAATTTAGCTATGTTCATTTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAGGATAGCCGCGTGGCGAAAAGGATTGTGCGTTAGCAATTGTAAAAACGAAATTTTGGGATATGCAGGAATGGCGTAGTGGCAGGGTTTTTATGG # Right flank : ATTCTTAAACGCTGTTGCGGCTTGTAAAGACAAGAGACCCAAGGCTATCGCTCATGGGTCAATATGGATATTAAGTTGAGTATTTTCGGATAATTGAGTCTAGAGCAACTGCGGCATGTTTAAAGCCGTCGCTTACTCCATTAGCATACATTTTTTCGGCTTCATCCTGTTTCTTTTTAGCCTCAGCATCCCAAATAATTTGAATATAACTTAGGTCTATAATGAGTTTTTTTAATTCTTGAAACATATCTCCTCCATGTTTTAGGTCTCCAAATATTGACCGTTTGATGTTAAAAGTTATTAAGCAATAACTACCGTATTTTTTAAATCGAGGTTCATACTAAGCGTTAAGAGATCAAAAACTTAACAATACAATTAAAAAATGAATGAAAAAGCCAACCCATTTTTTTCTCAGCGGCCCTGGCGAACTACAAATTATATCACCACCCTTGATGTCGACACCTTTAACGTGTCATCAAGTCTATTATATTCCGACCCAC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGATTTGAAAC # Alternate repeat : GTTTTGAACGTACCTATGAGGATTTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 252648-253617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 252648 30 100.0 36 .............................. CAACACCCCAAAGGCTATGCATGATCCAGCCGAGAA 252714 30 100.0 36 .............................. CCGTTGTCACTTGGGCCACCATGATTTCCCGAAAGG 252780 30 100.0 38 .............................. CCCGATTATGGTGGTTGGATGGTTTTGCGGGCGGATTG 252848 30 96.7 37 ...C.......................... CTTTTAATTCAATACCTACCCCCAACTCTTCGCCCTT 252915 29 96.7 38 ..................-........... ACATATCAGAACCCTTGTGGTCATTTCCACACACGCTC 252982 30 100.0 36 .............................. TTATGTAAAGCATCCACAGTGCTAGTAGACCCGCAC 253048 30 100.0 36 .............................. AATGAGCAAAAGCGCGAAGCAACTAAGCGCAACTTC 253114 30 100.0 36 .............................. CACTTTTGACAGGTTTTGATACCCTTCCATTTCCCC 253180 30 100.0 38 .............................. TCGTATTTCGGCGGGAATGCCTTGTTCGTGTGGGAAAT 253248 30 100.0 39 .............................. CCGGGTGAATCTTGGTGCGACCTTGGACTTCTTTTTGCT 253317 30 100.0 38 .............................. ATGGCAAGCGTCCATTTTTTAGCACAGGAGCGGGGAAA 253385 30 100.0 39 .............................. TCCACCGTGCCCGCGCCGTCGTCGCCCCCAGCCAGAGGT 253454 30 100.0 37 .............................. TGTCAAGAAGGGGAGTAGGGGCAGCTTTTTGTTTTCT 253521 30 100.0 37 .............................. TGTGTAAAGCCGTTGAATGAGCTGCCCAATATTCGTA 253588 30 86.7 0 ...................T..G.AT.... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 98.7 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TATGGGCGAGAAAAGCTACGAGCCGTTTGAGGCTTTGTGGTAAGAGCGGGGCGCGTGATAGCTGTTTTGGAAAGAGGTGATGCTTCTGTTTGCGATCATTGTGTACGATGTCGGGGAGAAACGTGTAGCCCGGGTGCTCAAGACATGCCGGAAATATTTAAACTGGGTCCAAAACTCCGTGCTGGAAGGGGAAATTACGGAGACAAACCTGAAGAAGCTGAAGGCGGAGCTGAACAAAATAATTGAAGACGATGAGGATTCGGTTATCTTTTATACTTGGCGTACCCAGAAGTACTCGGATCGGGAGATCATGGGGTTGGAAAAAGGTGGACAAAGCCTTATAATTTAACTATGCTTTTTGTCGTCGACCTCCAATGCTGCAAAAAAGCCCGGGGGTCGACGACAACGATAGCTGCACGGTAGAAGGGATTGCGGCGTTAGCTGTTGGAGATATGAATTGTGGGATATGAGGGAATGGCGTAGAGACGGGATTTTTACGG # Right flank : CCTTGTGAAATAATGAACTGCTAAATCCTTGATATAAAGGATTTTACGAGGGAGAAACGTTTTGGGGACGAATTGGGGCGGAACACGCAGGAGCAGATAGAATACCCCGCTGGTTTATCATGAATATATAGGAGCCTAATAACTGAAAAGGTTGCATGTAAACACATTGCGACCTTTTCGAGGAGATTATTTATTTTTCGGATTTTGGCTCGTATTTAACGGTTTCCTTTGGTGATTTTTGTAATTTGTCCAGTTTGGAGCGTATACGCTTAATCATGGTTAAAGCTTCGGCTCTTGTAAGTGGATCACCTTCCTTGAATCCGTCAAAGGAGTTATCAACTTTCCCTTTTACAAAGCCGTTGTCCAGAAGATAACGAATAGAATCCTGTTGGTTATAGTTTTTGCCTGTAGCATCTGCAATAATTTTGGCCGCTTGACCCCGGGCTAGGCCAATATCAGAACCCTTAGGTTGATGGAAAGGAACGATCACATACCATCCG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 258743-259247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 258743 30 100.0 36 .............................. GCCGGAGCCAGCTTGGAGATATCTAAATCGATATCC 258809 30 100.0 38 .............................. TAAGTCTGATCGCCAAAGTAATAGTATTTGTGGACTTG 258877 30 100.0 38 .............................. CTCTTCCTATTGAATCCAATGTGAAGTCTCTAAAAATC 258945 30 96.7 39 ........................C..... ACACTATCCATATCACCCTTCACTAACTTTTCGTTCAAC 259014 30 100.0 36 .............................. CCAACAGCAATGACTTTAACTATACCGCTCATTTTA 259080 30 100.0 39 .............................. AAGTCGAGGGGGCATGTTTAACGCCGGGGTAACGGGATC 259149 30 96.7 39 .................A............ CTGAGTGTATGGCCCTTATAAACTAGTTTGTAATTACTC 259218 30 83.3 0 .......C.T.......A..........CG | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.1 38 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : GCGTTCTTTCAGTTCTTGTTTTCGGGATGCTCTAAGCATTGGGGAGGTCACCGCCTTTTGAAAAATAATGACTAAAGTCATAAAATGACTTTGGTCATTATTTTACTCTTATTTCTGGTATTGTTCAAGTATCCAAAAAGATGTGAATTATTTTGGAGGTTTGTGGTAAGGTGAAAGTGCGAGGCGTTTTTGTAATGATTGCCCATTGGAAAGCGACTGGTCTGTTTTTTTGAATATTAGTAGATGTTAGGGAAAACATTGGGTCTGGGTACTGAAGAAGTGCCGAAAATGGGTTAAACCCAGGTGACCATGGGGTTGGAAAAAGGTGGACAAAGGCTTATAATTTAACTGTGCTGTTTTGTCGTCGATCCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAGGATAGCTGCGCGGCAAAAGGATTACGGTGTTTGCTGTGTTCGATACGTAATTCTGGAATATGTAGAAATGGTTTATTGGCGGGATTTTGATGG # Right flank : GCTCGATAGCAATTTTCGTATCTGAGAATCCTTCCCTGTTTTGACCGTACCTCCGGCGCGTTTGGAAGAATATTTAACGAAGTACCTTGAGGATTTAGCGGTTAGAAAAGTCATGCGAGACGCAAAAATAAACTACTCGCTCGAATGTTCGGTCAGCTATTTCAGGAGTCTCTGTGTTTTCTAGTTTTCTGGAAATCAAGTGAACAAAAGGAGAAAGCGTCTTTCGAATAAACCATGCGGAGATCCTAAGATGCAACCAGTCCGATAATGTGAGTTAACCTGTACACATAGCATGTATTGCCGCCAATTGGCGGCTTTTTTACTGCTAGAGTCCTGGCATATGCGGAAGCGAAACCGGGACATACGTACTAGATCTGATAGAATAGTTAGTTGTCTGTTCGTATTTTTACAAAAAAAGGGGAACGAAAGGAGACTGCATGATATAATGACACTATTCATATCATCATTTGTTGCCCTCGATGGGTGACAAAGTTTTGCTG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 265722-266561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 265722 30 96.7 39 .................A............ CCTGGTGCAGGAAGTTGGGCGCCCTCAGCGCGGTATCCA 265791 30 96.7 39 .................A............ CTTGATGCATTGCAATAGCTGCCGGATCGTGGTTTATGG 265860 30 96.7 38 .................A............ CCGGATGTAAATCGTCCCTTCGATCAAAGCATGAATCC 265928 30 100.0 37 .............................. TTCGGTCGCCTCGATGGCCTTCGGCCGTGACCCTACT 265995 30 100.0 37 .............................. TGTTCAACACATAGATGTGTATAGTCATGATGATTGG 266062 29 96.7 38 ........................-..... AAGAAAAGTGGTGATCTCATGAACGTAATGGAGATTAT 266129 30 100.0 35 .............................. TCTTTCGAAGGCGATAGGTGTCTCTACAGCTCAAG 266194 30 96.7 36 .................T............ AAGGTTTCTGACGTTACGGATGATTCGTTTACCGTG 266260 30 100.0 36 .............................. TTGAGATATGCTCCGTACCTCATGCCACCAAGAGAA AT [266267] 266328 30 100.0 39 .............................. TGGGCATAGAAATGCCCGGGGTCAGTAAGGTAGGTCATC 266397 30 100.0 38 .............................. AAAAAACGAGCTCCGGGAATCTCCCCATTTGATACGGA 266465 30 100.0 37 .............................. CCGGGTGACAATTCAATTTACGGATGTGTTCGGGGCG 266532 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 98.7 38 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : AAATTAAAGATCCAAGCATCCTGGCGATGCTATAGCATGCAGAAGAGCGCCCGACAAACAAAGGGCGCTCTTTGTGCATACGAGAGAGTAGCGATCGGAGACCTCAATCAATTACACACAACTCAAGTTAAGCGGAATTATTGTAATAAGGGAACGTTTGCTATGCCTTTTACACCGATTGTTCTAATTGTCAAGGATCAAAAAAGATGCGAATTATTTTGGAGGTTTGTGGTAAGGTAGAGGTGCGAGGGTTTTTCCAATGATTGTTTATTGAAAAGAGACCGGTCTGGTCTGTTGTTGTGATCATCTCGATCTTGGAAAAAGGTGGACAAAGGCGTATAATTTAACTGTGCTGTTTTGTCGTCGACCCTCAATGCTGCAAAAATACCGGGGGATCGACGACAACGATAGCAGCGCGGTAGAAGGGATTATGGTATTTGCTGTGGTCGATCTGTAATTCTGGAATATGTAGAAATGGCTTAACGGCGGGATTTTGATGG # Right flank : CTCCGCCGTTTTATTCGGCCGATCAGCTAATCGGCCAGCATGGTGAGCATGGCCAGCATTTCCTTGAACGATTGAGGGAAAGAGACGATGCGATCATTGCTCCCCCGTCACTTTAAAGGAATGAACCAGAGCTCAAGCGGAGGTCATTCCGCTTAATAATGCGCCGTGGCACGGAGTGTAAGCCAAACAGTGCAAGCAAAGAAAGCCTCTCGAGATCGTCTCGAGAGGCTTTGCGGCGATTAGAACGTAATCGAATGTCTGCGGTCTTGGATGCGTTCGCCGGAACGTGTTCGTTCGACATAGTGAAGCTTGTTGTCCGTCATCAATAAAATCGTAGAGCTTCTCGTACCATAATGATCGCTCTGAATGTAAATCGAAGAGAGGAGACGCTCCCACTGCGGCGGCACGCCGGTGGCAGGCAGCGCATCGTCAGGTGCCGGCTCCGCATCCTCAAGCAGTTCAAACAATGCATCGACACGGTCCTCCCGAAAGTCCTCGAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTAGAACGTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 5 274123-274737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 274123 30 100.0 35 .............................. CCATATCAACGATGTTGCCAGATACTGCTTCAGCG 274188 30 100.0 39 .............................. TACGAAGACGGGAACGAACTTTTTCGCGGCATTATTTTC 274257 30 96.7 20 ........T..................... CTAACTACTAGGCATATCAA Deletion [274307] 274307 30 100.0 36 .............................. ATTAGATAGCCTACCTTGACTGTTTCTTTGTTATAC 274373 30 100.0 37 .............................. TTTCATCTCCTTTATCCCTTATGAGGGGTTAAACTGG 274440 30 100.0 36 .............................. TAAAAATCGTCCATAGGCAGTCCAAAATACTCCGCA 274506 30 100.0 37 .............................. CGCTATCGGCTACGCTGCTTATCGCCCCGCTTATACC 274573 30 96.7 38 ........T..................... ATGTTAGAATGGCCCTTTTGCGCATGCTAGGGCAAGAA 274641 30 96.7 37 .........A.................... TTGCGTATGGTTGCGTTCTATGTATTTTGGTGCTCGA 274708 30 93.3 0 A............................T | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 35 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TAGCTGACGACGTATTGACTTTCATAAGTCAGACAGAAGTTGAAGGTTTTTGGCTTCATTTGGATGCTGACATACTGGATGCCGCGATCATGCCTTGTGTGGATTGCCCGGAGTCCGAAGGTCTACAGTGGGACGAGCTAACCATCCTTTTGAACAGGATACTTTCTTCGCCTAAAGTGATCGGGATGGATGTGACTATTTTAGATCCTGATCTGGACATTAGGCATGAGGTAACGCGAACTTTTTCTGCATTATTAACAAAAGTGTTGAGAGTGGACAGTAATCCGACACGAGGAAGCGTGAGATCATAGGGGTTGGAAAAAGGTGGGGGACGTATTATAATTTAACTGTGCTAAAGTTGTCGTCGACCCCCAATGCTGCAAAAAAGTCCGGGGATCGACGACAAATGAATGGCGTAGCGGCGGGATTTTGGCGATTTGGGTGACTTGAATGTGATTTTGTAAAGAAAGGAAACTGCAGGAATTACGGCATTTTGATGG # Right flank : TACTCGAAGATCCATCCTTCCCATAACACGCCCGCGGGGCATAATGATCGATGTAAACGGTGCGTAGGAGATGAAGCCCCTGAAAAGAAAATACGGAGATCGTGCAGAGTGGAAGCGCGTAGTGGAGAGAAGGTACGCGCAGTCTTATTTGGAAACGGAGAGCTATAAAGGGCAGGTAACACTTCTTGAAATTTCCAAAGTTACAGAACCTTTATACGTCACCTATGACGATAAAAATATTTGTATTGCTGATGACGGTTATTTGTGGCTTCAACAATTCCCATCCGATAAGCATCATTCGGTGACAACAATGTTTAACGCAAGAGGGAAAGTTGTTCAATGGTACATTGATATCTGTTACATGAATGGAATCGGCGAAAACAACATCCCATGGATGGATGACTTGTATTTAGATATCATCATCTTACCGTCGGGAGAAGTTGTCCAAAAGGATGCTGATGAACTGGAAGAAGCCTTGAGGAATGGCATTATTGATAAGC # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTGAATGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 6 283195-283489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 283195 30 100.0 36 .............................. AGGATAGTCTTCAGGCTGCTGGATTGTGTTTGCTAA 283261 30 100.0 36 .............................. CGTTGTCGTGCTGATTAAGTCGTTCATTCCGTTCTC 283327 30 100.0 37 .............................. TTGAACGATAAGTGAAACTGTAGCGTACTCACTACGT 283394 30 100.0 36 .............................. CACGATCAGAGAGCTTCAACGAGGAGGCGGCGCCAA 283460 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : CCGCGATCCCGGTTCCCGATCCGAAGGTGGAATCGCAGAAGACGTTCACCGCTGAGGCGGAATCCTCGAAGGCGGACCCGTACGGCTTGGAGCGCTCAAGCTTCGTTGAAGTGAAGAAGGGGCATTGGGTGGCGGTTGCTGAAGGGTAGGGTAAGGTGTGAGGGTTTGGGGATGAGTGGGTAGGGGATTAGGAATTAGGGTCGATTCCGTTCGCTGTGTTCGGCCGCTGGAAGAGATTGAAGGCGAGGATATTAAAGAGGTAGAATTAGCTTAAGCCATAGGAATAAACCAAAGCGTCAGAGTTTAATTCCGTTGGAAAAAAACGGGCAAAGTTGTATAATGTAACTACGCATTTGTGTCGTCGACCTCCAATGCTGTAAAAAAGCCGGGGGATCGACGACAACGAAGACTGCACGGGTAAAGAGATTTTGGTAGCTGACGTGAGGGGGAGAATTGTTTGTTAGATGTGTGGGAATAGCGTAACGACGGCGTTTTTGTGG # Right flank : CCGAAAGAAACCTCGGGTACGGGCGGGATGTCTTAGGCAAAATATAGCTTGAGAAAAAAGGAAGTTTCTTCTCATGTTGACGAACTGCTTCAAGCTTTAGAGGTAGCAAAAAGGATGAAGTATTTTACGGGTTTTGAAATGTGTGTTGCTGCAATCAAGAAAACAATCGACGCTCTTTCTGAAGACCAAAAGGAGCGATATAAACAATTATTGGGAGTGAAAAACGAATGAGGAAAGTATTTTTTTCATTAGCTTTTCTTCTGGTATTAGGGATTGTGACAACTCCACCACCTGGGCTAAATCAGCAACCTGTGACAGCTTATGTAGACGTTGGTGTAGGCGAATAGAAAAAATAACTCCTGAGCTCTTGGGTTCAGGAGTTATTTTTTTCTCAAAAAAGTTGAGATTTTTTCGCAAATTGGATGCGACGCTGCAGGAAGGCATCAGGGCAGGTTTTGCAATAAACGGATGATAATGAAAAGTTTATTTTCTAAAAAACT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 7 297693-297920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVM01000005.1 Paenibacillus tyrfis strain MSt1 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 297693 30 100.0 36 .............................. TAGGAGGCACACTATGGCATTCAACGACCTGTACAA 297759 30 100.0 37 .............................. CCGTAGCCGCCAAACCCTGTCCCGGGTCCGCCATCTC 297826 30 100.0 35 .............................. GACGATACAAGAGTTTGACCTTTTACGACTCTTTC 297891 30 90.0 0 ......................G.AT.... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : GGGGAAAACGTCCCTGGTGGTCGGCATCCGTTTAAACGTCCGTTAATCATGGTCCAACCGGGATCTTGTTTTTACTCGCCAAGCTTGCCCCCTTACTTCGGTACGGTGGTGAGAAATGTTTCACCAGAAAATCCAAAGATCGTGCAGCTTTGCTTTGGTCTGACCGTTCCTGTGAAGCTTCCGAAGTTAGACGGAGACCAACCTGAAGAAGCTTAAAGCGGAACTGAATAGTATAATCGAAGACGATGACGATTCGGTTATTTTATATACCTGGCGGACCCAGAAGTACTCGGATCGGGAGTCATGGGGTTGGAAAAATGTGGACAAAGCCTTATAATTTAACTGTGCATTGTGCATGTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCCGGGGATCGACGACAACGATAGCTGCACAGCGGAAGGGTTTGTAGCGTTAGCTGTGGGAGAGATGAAATTATGGGATATGTGGAAATGGCGTAGTGGCGGATTTTTGTGG # Right flank : CCTTGTAATATAATAATCTGTAAAGCCTTGCTGCATAAGGGGCTTTAATGAGGGGGGAAACTGTCCCGTTTTCGTTCTAGGGACGAATTGGGGACGGACTCTATATAGAAGAAGGGCGGCGTTCAAACCTATCAAATTTAGAGGTTGCCCGTTCTTCCATTGTTTTTGTGACGTGGCTGTATGTCGTAATCAAGGTGCGCTCATCTGAGTGCCCTAAGCGTTCGGCTACAGCACTCTTTCATGTACCAAGCTCTCAAGCGCCACAACCTCTCCGCGTCGAAACGCACCGGAAAATGTCCCCAAGATCATGATTCGCCAAACTACAGGCCGTCGATATAGCGCATCAACGATCGCAGTTATTTCAGCTTCGTTGTAAACTTCGATCTTCGTCTTTGATTTCTTTGGCCAGCGTAGGCCGTCGCACGAATTCGTATTGATTAAATTCCATTCCTTTGCACGGCAGAAGACGTTTCGCAATACCCGAAGAATGTACCTAAAAG # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //