Array 1 39076-33250 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVN01000002.1 Bifidobacterium pseudolongum subsp. globosum strain 1511B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39075 29 100.0 32 ............................. TGGCCGGGGTTAAGGATGACGTGGCTGGCGCG 39014 29 100.0 32 ............................. GTGTGGTTCGCGCGCGTGGGCCGCGTGTTCGA 38953 29 100.0 32 ............................. ACGACACGCCCGGGCGAAAAAAAAATTGACAA 38892 29 100.0 32 ............................. GGGAGCGCGCCCAATGGTGGAACCGCATGGCG 38831 29 100.0 32 ............................. TCTATCCACGCCTGCTCGATGTTGCTGTAGGT 38770 29 100.0 33 ............................. CCTGATGACCCAGCCGACGACGGGTTCGACGCC 38708 29 100.0 32 ............................. TCAAATAAAGACGGCGTGTCGATAAGTAAATA 38647 29 100.0 32 ............................. TCGACAACCTCAACGCAGCCGTGGTCGAACTC 38586 29 100.0 32 ............................. ATCATCGACCCGTTCAAACGTGGCCTGCAGGC 38525 29 100.0 32 ............................. AGTGTCAATGAATGGTATAAAAGCCAGAATCT 38464 29 100.0 32 ............................. CCAATCGGGTTGGTGGCGCTCATTTGTATGTA 38403 29 100.0 32 ............................. GGTCTGGAACACGTCCCCCAACCATTGCCATG 38342 29 100.0 32 ............................. ATCCTTGTCGGCACGCTGCAGACCGCGCTCAG 38281 29 100.0 32 ............................. AAACCTATGTCAGATATTACAAATCGTGGTGG 38220 29 100.0 32 ............................. AACAATGAACGATGAGCCGCAGGGCCTCGACC 38159 29 100.0 32 ............................. ATATCGCCGATACCATTGATCAGGCCTTGGAT 38098 29 100.0 32 ............................. AGGTCGATGACCAGGAGTTCGACCGGCTCGCC 38037 29 100.0 32 ............................. GCGAACCGCACATGCGACTGGTCAGGTAGGTA 37976 29 100.0 32 ............................. GCTCCCGCATACGGCGCATACCCCAATGAGTG 37915 29 96.6 32 ............................G TGGGAAATGACCCAGCCGACCCAGTCACATTC 37854 29 100.0 32 ............................. TGAACGGGAATAGCGGAGCGACCGTAGGTGAA 37793 29 100.0 32 ............................. GGCACGGCGTGTGGATGGTCGACGAAGCCGAA 37732 29 100.0 32 ............................. CCGTCGCGTTGGCAATTGTCCGACTGGCAGCC 37671 29 100.0 32 ............................. ATTGGGTGACCAGCGAGGTGCTTCCGCAGATC 37610 29 100.0 32 ............................. CAGGAAGGAACAACCATGACCGACACCACCAC 37549 29 100.0 32 ............................. ACGGTGGAGAGCGTGAGCGGGTCAACGCCGGC 37488 29 100.0 32 ............................. AGTTGGTCTTCTTTCTTGCGTTCCCAACTGTT 37427 29 100.0 32 ............................. AACTGTCGGAAGCGTCTGGGCTCAACGAGTCG 37366 29 100.0 32 ............................. ACTCTTCAACTGTGCATAGCCTGCCTGCATGC 37305 29 100.0 32 ............................. GTCTCGCCGGCGGTACGGGTCCTGTGCGCGGT 37244 29 100.0 32 ............................. ACGCCCGATACCGCAGAAGCGAGCCACACGTA 37183 29 100.0 32 ............................. TCGTATGTGGCGCCGTCTGCGGGCTCCATGAC 37122 29 100.0 32 ............................. CAGACCATCACGGCGAACAAGGAGATCCTCGA 37061 29 100.0 32 ............................. AGCCGTCTTAGACGTTCGGGCGAGACGTTAGT 37000 29 100.0 32 ............................. CGTTCGAGGACGTGTTTCTCGTTTGGGTGCAG 36939 29 100.0 32 ............................. CGGGTGGTGTTGATAGTGGTTTTGGTGTAGAT 36878 29 100.0 32 ............................. GTGTACGGCGGATCGGACCACACCGACCCGTA 36817 29 100.0 32 ............................. CCGTTGTTGTTGAGCTGAATGCGCTCATTGCT 36756 29 100.0 32 ............................. AGTTCGTCCACGGCTGCGTTGACCTCACTGCG 36695 29 100.0 32 ............................. AATGATCTGCATGCGTGGGCGTACGGGCGTGC 36634 29 100.0 32 ............................. CGATGATGCTTTGCACGCTTGGCAGCACGGCC 36573 29 100.0 32 ............................. ACGGCGTTCGTGGAAATGGCGCCGTCGAGTTT 36512 29 100.0 32 ............................. AGATCCGCGTACACGTCGAGCGTCATGCTCGC 36451 29 100.0 32 ............................. TATGAGCCGACGGGCTATCAGGCGCACCCGTG 36390 29 100.0 32 ............................. ACATGGTTGGCCCGGGTCGGCTTCTGGTTCGA C [36381] 36328 29 100.0 32 ............................. TGGTTTGAATCACTGGACAACGGCAAACCAAT 36267 29 100.0 32 ............................. GCCAGCGTGCCGCTGATTATCGCGTGCAGCGA 36206 29 100.0 32 ............................. CAGAAAACGCAAATGGGCATCAATAACGCCTA 36145 29 100.0 32 ............................. TGCTCGCCAATAGATATCAGGCTATTCGTTCC 36084 29 100.0 32 ............................. ATCCCTCAATGAAGCACAATCAAATCGGGTGG 36023 29 96.6 32 ............................T ACATGGTGCATGGGTAGGGACCCTATTATCAA 35962 29 100.0 32 ............................. GGTATGGCCCGGTCGGACAGTTCCTGGCACAC 35901 29 100.0 32 ............................. GGCGTATCGGTCGGCAGGCCGCGACGGCGCAC 35840 29 100.0 32 ............................. GCGATGCGCCACGGCTGGATGCACCCCAACGA 35779 29 100.0 32 ............................. CATGGTCAGCAAACACAAAATCGAAATGGTCC 35718 29 100.0 32 ............................. AGCGCCACGCCGTTCTCAAGCAGCGTCATTTC 35657 29 100.0 32 ............................. ATCGCATGGACGCGCACATTGTCGTACAGGTC 35596 29 100.0 32 ............................. GTGGTAGGGCGAGTGAGCGCTCTTCGCCCTAC 35535 29 100.0 32 ............................. AACAGGACGAGCGCACGCCGCTGCACACCCAG 35474 29 100.0 32 ............................. ATACTGGACGCGGCAGGGCTTGCCGAGTCCCT 35413 29 100.0 32 ............................. GATGACCGCGACGTTCGCGGGAGCGACCGGCA 35352 29 100.0 32 ............................. GCGGGGCTGGCGACGATGGGTTTGGAGCAGAC 35291 29 100.0 32 ............................. GTGGTGCCACGGGCGTGGTCGTCCTCGGCGAT 35230 29 100.0 32 ............................. GACAGTCACAGGCCGACCGCGGGCGGCGTCAG 35169 29 100.0 32 ............................. CACCGTGTGAGCAGGCTGGGTGGTGGCGTCCA 35108 29 100.0 32 ............................. ATGGCGTTTACGGCCACGGCGCCGATACCGGA 35047 29 100.0 32 ............................. GTGAAATCGAACCCGGCGATGTCCGCCAGGTC 34986 29 100.0 32 ............................. ATGTCGCCGATACCATTGATCAGTCCTTGGAT 34925 29 100.0 32 ............................. GACACGGGTGGCTTGTGGTCGATGCGGTACTC 34864 29 100.0 32 ............................. GCCGTACCAAGAACGGGCCGAAAGAACCCATC 34803 29 100.0 32 ............................. ATCGTCGCAGACGGTCCCGCAAAAAGCACCGG 34742 29 100.0 32 ............................. AGCGCGCGCACATGGACCGGCGACGCCTGGCG 34681 29 100.0 32 ............................. GTGGACAGGTCAATCTGCCGGTTCAGTTCCTC 34620 29 96.6 32 ............................T AGACACATGAAAACCATCGAATCCGCCATCGG 34559 29 100.0 32 ............................. GCCCAGCGTGTGCCGTTCCACACCCAGATATG 34498 29 100.0 32 ............................. ACACAGAAAGGCACCCAATCATGACCCAGACA 34437 29 100.0 32 ............................. TGCGCCAGATACGTGCCGCCCACATCGGATAA 34376 29 100.0 32 ............................. GTGGACAGGTCGATTTGCTCATTCAGGTTCTC 34315 29 100.0 32 ............................. CAGCGGGAGGCACGCAGCAGGCACAAGCGCAG 34254 29 100.0 32 ............................. ACGGCGGATACATGGCAGGGCAGGAGGCCATG 34193 29 100.0 32 ............................. TGGGCCGGCACCTGAATCTCATCCATAATCTG 34132 29 100.0 32 ............................. CGCAGAGCGTCAAGACCGGCAAGACCGCGCAG 34071 29 100.0 32 ............................. GTTTTGCAGTGGTCGCATTCGGTCCAGTCGAT 34010 29 100.0 32 ............................. AGTTCGCACAATGCGTTCCATGCTTCGCCGAT 33949 29 100.0 32 ............................. GCGGGCTCCACCGTGCTCCACGCGCCCTCGGG 33888 29 100.0 32 ............................. TTCTTACGGCAGATCCTCGTATTCGGTCTGCT 33827 29 100.0 32 ............................. GACGCGGTGGGATTTATTATTTCCGCCACGAC 33766 29 100.0 32 ............................. CGCAACGTGACCTTGTACTCCTGATCGACGCT 33705 29 100.0 32 ............................. AGCAAAGAGTGCGTGCCGATATGGGACAATCC 33644 29 100.0 32 ............................. ACGATGCTCTTCGGCCGCAGCCTCGTGTCGAT 33583 29 100.0 32 ............................. GCGCTCGCAAGGGTGGGGGAAGTCGCAGCATA 33522 29 100.0 32 ............................. GTGAACAACTACAATAACCCCACCATATTCAA 33461 29 100.0 32 ............................. GCGGCCATATCGGCATCGCGAACGAACGTCAA 33400 29 96.6 32 ........................G.... GCGTGGGCGAAACGAGAGCAGGAGCTGTGGCG 33339 29 93.1 32 ..A......T................... ACATTGCGCGCCGCATCGAACCGCTGCGCCTC 33278 29 93.1 0 .........T..................G | ========== ====== ====== ====== ============================= ================================= ================== 96 29 99.7 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GTGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTTAAAGACGGTAGGGCCATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGGAAAACACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCATTCTGATATGTTGGAATTATTGGGATTTCATAGC # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACACTCGTTCTCTATGGCGATGAGAAAAACGCCGAGGTCATCAGGAGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCTCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAGCTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCGGCCCACGACATCTCCAACAACTGACCTATATTCTCCCATACACGAAAGGCCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //