Array 1 65292-64288 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJUS01000004.1 Escherichia coli strain ME2L-19-440 NODE_4_length_328265_cov_15.336413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65291 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 65230 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 65169 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 65108 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 65047 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64986 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64925 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64864 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64803 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64742 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64681 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 64620 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 64560 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 64499 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64438 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 64377 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 64316 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92240-90991 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJUS01000004.1 Escherichia coli strain ME2L-19-440 NODE_4_length_328265_cov_15.336413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92239 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 92178 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 92117 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 92056 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 91995 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 91934 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91873 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 91812 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 91751 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 91690 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 91629 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 91568 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 91507 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 91446 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 91385 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 91324 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 91263 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 91202 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 91141 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 91080 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 91019 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //