Array 1 70045-76947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000009.1 Planktothricoides sp. FACHB-1261 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 70045 36 100.0 42 .................................... TCAGTGTCAATCGTTTCGCACAAAACTGTATCGTTTTGCTCT 70123 36 100.0 35 .................................... ACTCACGGGGAAGAGCTTAAAGGAGTTGTCATTCA 70194 36 100.0 35 .................................... GTAACAAAATCCATTTTTTCGCAAATACTCTTCAT 70265 36 100.0 40 .................................... TGATGAAAGGTTTTCCAGCAGGAAAATTTTTTCAGGCTTA 70341 36 100.0 38 .................................... TTGAGTCGATTCTTCCTGAGTAACAGTATATTCAACGT 70415 36 100.0 39 .................................... CGAAAGAGATCCTGCTGATCGTAAGAAAAGGCAACGCCG 70490 36 100.0 36 .................................... ATCGTTGGTATTCATGTTTGTTTCTCCTTTGTTTGT 70562 36 100.0 36 .................................... TAGAAAATTTCCCGATCGACAAAAAATCACTATTAC 70634 36 100.0 41 .................................... ATACGGTAAGAACTGTCTTTTTTTTTGTTCTACCAAAAAAA 70711 36 100.0 44 .................................... TCTAAGGAAAACAGCAAGTTTGCTGAGAACAGTCTGTGAATCAT 70791 36 100.0 41 .................................... CTGACAAAATTATTGTGAGGGGATCTAAGAATTAGGATATT 70868 36 100.0 38 .................................... CTCGATTATTTGATATAATCGGTAACCGTTATTTTCTA 70942 36 100.0 40 .................................... GCCGAGATCACACAGGTTTTCCGCGCTAGATTAAACTCTG 71018 36 100.0 40 .................................... GAAAACTCGCAGAATTTTGGTGTCAGAGACCGAACGGGCT 71094 36 100.0 35 .................................... GCTCGTTCTGTAGACGACCAGTGGAAGGGCGTCCA 71165 36 100.0 42 .................................... TAGCACATAACCGATTTTTTGGTATCAATTACTAATGCTTAT 71243 36 100.0 37 .................................... AGAGTTGCCCCTTGAGGCACAGGAGACATCGTTGCAG 71316 36 100.0 44 .................................... TTAAGTAAAAAGCTACACTGCTTCAGATTTACGGTTGTTCTTGC 71396 36 100.0 39 .................................... AGTCAACGATATTCCCGACACATACCGATACTCATTCCA 71471 36 100.0 40 .................................... GCAACCTACCTAAATCTAGAGGTGGAATTCCCAGACGGAT 71547 36 100.0 37 .................................... TTTATTCATTTTCTCTGGAATTCCATCAACGTTAAGT 71620 36 100.0 40 .................................... ACATTAAAGTTAGGACGGGTTGTACCGTAATGACGTTTAT 71696 36 100.0 43 .................................... TTAACTAAGCTAGTAACAGACTGGAAATAGCGAACAGAATATA 71775 36 100.0 41 .................................... AGTCGGTGTCTTCAAGAGAAGGTACAGCTTCTACAATGAAC 71852 36 100.0 35 .................................... CATTAGTAGCCATAGCTACCATACCGGCAACTGCC 71923 36 100.0 35 .................................... GACCTTAGGTCCTTGTCCTAGTTTTTTGAGACTAG 71994 36 100.0 43 .................................... GTGCCTTAATTTTGTCAAGGCAACTCAGTATGTTTTTCATCTC 72073 36 100.0 41 .................................... AAGCCAAGTAATAAATAATAAAAAAGCCAGATATTACTGGC 72150 36 100.0 52 .................................... TCCCATCATTGCCGTTCCTTTAAGTCCCAACGCTTGGGCTTCATCTTGACTC 72238 36 100.0 44 .................................... AAGGTTTTGAGTAACGCTTCTTTGACTATTATCGCGGTCACTAT 72318 36 100.0 40 .................................... TTGATAGCTCCGGCTTGAATGGCTTTGGCTCCTTGTTCCA 72394 36 100.0 37 .................................... AGCATGGCTGAATCCAACTAAGTCCAAGGGTTTACCC 72467 36 100.0 38 .................................... TTTTGAGTGAGGCAAAATATTCGTTTAGCTGTTCTTGA 72541 36 100.0 46 .................................... GGGAGCGTATCTGACGTTGTGTTTGAAATGTAGGTTTAACCATATA 72623 36 100.0 41 .................................... CTGGATGGATTGGAACCTGAGCAGACTCGTGCATTATCGGC 72700 36 100.0 41 .................................... TCAACTTCAATGGACGTTGATGGAGAGACTTCTTATGACCT 72777 36 100.0 38 .................................... CGAAGATATTTACCTTCTTCTCCAACCTCTAACTTATC 72851 36 100.0 39 .................................... CCATCCTCATCGATTAACGTAGGTCTGTAGTCATAAGTC 72926 36 100.0 40 .................................... CAACTCCGATGTCATCACCAGAGGAAGAGAAGGATTCGAA 73002 36 100.0 42 .................................... TGAAAGCCAGCTTCACATAGAAGCTTCCAATATTGAATGGAG 73080 36 100.0 39 .................................... GTACCCTATCAATGGTCGTCGTGACCAGAAGGGTTACGA 73155 36 100.0 38 .................................... AGCAAGCAAGTACACCTCCATCTCGAACTTAGTACGGA 73229 36 100.0 38 .................................... TAAACAGTGCAGACGAAATTAGAATAATCCCAAGAAAC 73303 36 100.0 40 .................................... TAGCGAAGGTCAAGGCTTGAGATACACCGGCAATCATTAA 73379 36 100.0 41 .................................... CACTGCTGTTCTTACCAGAGCGAGCTTTAGCTGTGGGGAAT 73456 36 100.0 40 .................................... TTGAAAGGTGATTTCCGTTCTTTGATTGATTTGCCTGTAA 73532 36 100.0 36 .................................... TAGGCAGTAAGTTTTCACTCATATCATTATTTTATC 73604 36 100.0 39 .................................... TCAAATGATGTTCTTCCACTAAACAAAAAAAGACCTACA 73679 36 100.0 35 .................................... ACTGCGTACTTACCGCCCTTGTGAACGAATGAGCT 73750 36 100.0 39 .................................... AAAAGACATTCACTATGGCTCCTTCCAGCGCGGGGTGCG 73825 36 100.0 39 .................................... AAAAAATGTTTGGGGCATTGGTTTATTCCTCAAATTTAA 73900 36 100.0 37 .................................... GTCTGACAGAAGAAGCATTGCGAAGCAAGCAGATAAT 73973 36 100.0 39 .................................... TGGTTGCCCATTGAATTCGGGCTGCGTTTTGGATGTCGG 74048 36 100.0 44 .................................... ATTAATGAAATTCTTATCGCCGCAAGAAATCGCCGAACTGGACA 74128 36 100.0 39 .................................... TCTCAGTATAAGGGTAGAAAGTTTAAAGAGAACTACAAA 74203 36 100.0 45 .................................... GTATGTTAGGCGGGGAGATTGCCCGCGAACAAGCAAAGGCTGGAT 74284 36 100.0 39 .................................... ATTTCCCTTTTTCTTTGTAGGTATTGGTGGATGCATCAT 74359 36 100.0 35 .................................... ATAACTAAACAATGGAAAGGCAGGACAATCACTCT 74430 36 100.0 49 .................................... CCACTTAGTATAGAAAGGCTTACCAAAACGTCCTTGGTTTGCTAGGTTG 74515 36 100.0 39 .................................... CCCTTCAGTGGATTGAGCGAAAGCCGAGTAGCAAGTATT 74590 36 100.0 41 .................................... GTGGATGCAACGGGAACGGTCCTGGTGGGCTGAAGAACCAG 74667 36 100.0 36 .................................... GGGAATGTTGAAGTTCCGGCTCCATTTCACTATTGC 74739 36 100.0 41 .................................... ATTGATTCTGAATATATGTAACTTTGGGATTCTTCTACCTT 74816 36 100.0 40 .................................... GTGAAGTTGCTATAGTCCCGTGTTTTAATATACTTTACTG 74892 36 100.0 38 .................................... TAATTGCTCGTTGAACAGTGTATTGTTCAGGTTTAGCA 74966 36 97.2 41 C................................... CGATATCGTTATCGAAACCAATACCAGCTTTATGTAACTGG 75043 36 100.0 35 .................................... TTCATCTTTAGAACTCAGACCATTGATGGAATTGA 75114 36 100.0 37 .................................... TATCTTCGGGAGGATAGGGGGACTGAAGCAACATCCC 75187 36 100.0 39 .................................... ATTGGTAGTACGAGACTCCTCATCATAGGAATCAATCAT 75262 36 100.0 37 .................................... CCTCTTGGATGTGGCTTTTGCCTAGTAGGAGTCCTTC 75335 36 100.0 38 .................................... GTTCTCCCGACGTATGCCAGGAAGGAATACACCTTCGT 75409 36 100.0 38 .................................... AGTTAATACAGACTACCTCATACGATGAGTTATCTTCA 75483 36 100.0 42 .................................... GGAATATCCTCCTCATTGGAGCCCTCTTCCATTAACTCTACC 75561 36 100.0 38 .................................... CCAAAGTACCCGAGATTTACTAAATCTTCTTTATTCAG 75635 36 100.0 39 .................................... CCTTAATTCTCGAAGTCTTGATATCTATCGAGTGATCGA 75710 36 100.0 40 .................................... GTTCCCCAATCATACCCTTGAAAACTTCCTTAGCCTTAGC 75786 36 100.0 39 .................................... TACCGGGAAGACCTTCCATAGCGCGAATAGCTACAGCTT 75861 36 100.0 37 .................................... ACATTTGAACTTCCTAAGTTTTAAGATTGATTAAGAA 75934 36 100.0 37 .................................... ATAGTTCAGTATCGAACTTTCCATTTACCGGCATAAT 76007 36 100.0 42 .................................... TTCCTGTCGCAGAGGACAGAAGAGCATCTTGTACTCGAAGGC 76085 36 100.0 43 .................................... GTCAGTGCATACTGCTTAAGAGTCTTCTTCTTACCCGCGTCCT 76164 36 100.0 38 .................................... CAGTGCTCTTTCGTGAAAGAAGGCTGATGTACTCTACT 76238 36 100.0 40 .................................... TTACCTGACAGGAGGTACACTCTTTACTGCCTGCTGGGAA 76314 36 100.0 40 .................................... TTAGGATAACTGTATTCGCGCTCGTATCTTTCTTGGCTGG 76390 36 100.0 35 .................................... GTCACCAGTCGATTTTCACTACAAGATACTACCGA 76461 36 100.0 37 .................................... GAGGCAGCTTTGTTACGCCATTGGTCCACCACACTGT 76534 36 100.0 44 .................................... GAGTTAGAGCGAGAAGTGGGTATTGTAGATTGAATAGTAACGAT 76614 36 100.0 39 .................................... CTGTCAACCAGTTTTAACCAGTTTGTCAGTGAACCGATA 76689 36 100.0 38 .................................... CAAAACCATTGTCAAAGTTGTTGTTCATTTTCTGTCAT 76763 36 100.0 35 .................................... GCAACATTTTTCAAGTCCACTGGACTTTCCGCCGC 76834 36 100.0 42 .................................... TAGAACTAAACGTAAAGCTTAAGGTTGGCAGTGGCAGCAATC 76912 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 92 36 100.0 39 ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : AGCCACAGAAAGGTACTTAGCACAGCAACCAGACTGAGATGCGATGCGATCGCCACCCAACCCAGTTTCAACCCTTCACAGCGTAACTTTGGGCGTATCGTTATATGGTAAAATAAGTAATTATTCCCCGAACAGTTACTAGGGGGTAATCGGTCGGCTATCTTCGGGTAGTCGGCCACTCTTTTTTTCAGCCTAAATGCTTCAGTAAAATCTCCGTAAATTGCTAACTGTCTAATTTAGAGACTGCTGATTAATGATTCTGTTAGCTGTTATAAGTTTGTAAACAAACCAATAAACTATTAACTACCTAATAAGTAACTACCGCGAGGTTCACGGAAAATCGCTGTAACTTAGCTAATTCGTCGGGAACCTCGCAGCCTCTCTGGGTAAGGGTTTCAGCGATTTTTTTTTCGAGGTTTAGCAAAATTGTAGCAACAAAATTGGTGAACCTCGCAAACCGCCTCTAGACATCTTGCTGGGTAAGGGTTATAATTTTAGCT # Right flank : CGCTAAGACAAAATTAGTGGGAGTTTTATATTAATGTTGACAAAAGAGTAGATTTCGCGTAATATATAATTATGGTGAGGCAAACAAACTGGGAGTTTACACCCCATGGAGACTCTATAAAAAGAGTGGATTTCGTGTAATATATGGTTGGGGGCACCTCTACCGCATAAACCCCCAGCCTGACGCTCTAGCAGTAAAGGCAAAGGCATTCCCCAGCCGAAAGCCGAAAAGTTACGGCAAAATCATTTGTCAGTTAAGACAAAATTAGTCGAAGTCTTATATTAATGCGGAAATCGAAAAGGCTTCGACTCCCCTCGACTCCGCAAATAAGAACTAAAAAAAATCAGAGACTTCCGTAGCGACAAAAGCTCTAAATCTTCAACTTTTGGAAAACTCCAAAGACACCCTTTTAAAACTCAAACTTGTGCAACAGGCTTACTCCCCACTCGCTGGGGATACTAATTGATTGGAAACGCCATGACCATCCTCAGAAATTTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 31083-36243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000011.1 Planktothricoides sp. FACHB-1261 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 31083 36 100.0 40 .................................... TTGTTCTATTGTTGTTGAGTCAAATGCCCCATAGACTACT 31159 36 100.0 40 .................................... TCAAGCGTAACACCCTTTAAAAGGTGCTCTATTATAGAAC 31235 36 100.0 37 .................................... GGCAGATGCGATTGCATCCAAGATAAGGTCTAGCCGG 31308 36 100.0 42 .................................... AATACGGATCTGGGTGGTCAATGGAAGTAGACAAGTTTTCTC 31386 36 100.0 41 .................................... TTGCCACCTTAGTATATTCCATGTATGTCTCCTTGTTTTGA 31463 36 100.0 39 .................................... TTGCTCTTCTGGGATTGTGTCTCAGTATCTCCGTCAGAA 31538 36 100.0 40 .................................... TTTTGCCAATAAGTTCCATCAAATCAACGTGGAGTCTCTT 31614 36 100.0 38 .................................... ATGAACAGGCAAGTGAGGGAATCAGCATCGAAGCCCAA 31688 36 100.0 42 .................................... AACAATTTTATTTTAATCCGACCTATGCAGGTATCTATGACT 31766 36 100.0 38 .................................... AATGCATCCTCTATTACAGGAGCGTAAGAAATTATATC 31840 36 100.0 39 .................................... TTAAAATTAATGTTCTAAAGACAATGTCCTAAAGACATT 31915 36 100.0 39 .................................... GAAATTTATCAATTTCTCTAGATGAAAACAGTCGTCAAA 31990 36 100.0 38 .................................... TCAAACTTGTTTTCCCCCAAGTACCCATAAAATAGTTG 32064 36 100.0 38 .................................... CCACCTTAACTGGTCGCGATCGCGCAAAAGTTATCCCA 32138 36 100.0 37 .................................... GTTCCTGTCTGGATGCTATCGGGTGCGTTGCGGACAC 32211 36 100.0 44 .................................... TCTATTATTAAACTTTTTGTGATCAAAACTAAAGTTTTGATTGT 32291 36 100.0 39 .................................... GGGACATTCGCCCCACTTTTTCAGCGATTTTTTTGGGAA 32366 36 100.0 44 .................................... AGATTTTCTTGCAATTCCTTTCGGTCGCTCACACAAAAACTGCG 32446 36 100.0 40 .................................... GTCAGAGTCTTGGATTGTTCAGTTTCGGTGACTTTGTGAC 32522 36 100.0 42 .................................... CAGGCACAGCTATCAATGCCGCGATCGCGCACTTTGACCAAT 32600 36 100.0 38 .................................... TCAGTAACGATCGCTGCGGTGGCGGTATCGGTTGCTGT 32674 36 100.0 38 .................................... TTCGGGTCAAAAAATTCCCTAGCAACAATTCAGCCGCA 32748 36 100.0 35 .................................... AAATAACTGTTTAGGAGTCGATCTTTTGATTCTGT 32819 36 100.0 38 .................................... TTACTTCGTGAGCATCTTGTATCTGCTCCAAGTCTTGA 32893 36 100.0 35 .................................... CACGGGAAATCCCGTATTTTATCGTACTTATCTCC 32964 36 100.0 41 .................................... TGCTACGAATTCTTTAAGAGTTTGCCTGTGGCTGGCAACTA 33041 36 100.0 44 .................................... CTTTTTGCCAGTAAACCATTATGTCAGCATATTCTTGGAACTCA 33121 36 100.0 42 .................................... TCTTGAGATTGAATCTTTGTTAACGAAAAGAGAAAGAGCAAT 33199 36 100.0 38 .................................... TGTACCTGTTCTAGTGGTTGTCGCATATAGCGTTCCGT 33273 36 100.0 39 .................................... GCGAACCCGTCAAACTCAAACTTAGAGGGGTAACCGTAA 33348 36 100.0 37 .................................... TCTTCATCGACGGCAATTATGTCTTCAATTTTTCCAT 33421 36 100.0 39 .................................... ACAACAGCGATTTCACCGACGTTCGGTAGCCATTCTTGC 33496 36 100.0 38 .................................... GGATTCGCCATATTTTGTTATCAATGCCTAACGTTGTT 33570 36 100.0 40 .................................... ATTGTTTTTGGCGATCTTGACTCCGCAGGTAAACCCAGTT 33646 36 100.0 41 .................................... TATTGATTGGTATCCATGTTTGTTTCTCCTGTTTTGTTGTC 33723 36 100.0 36 .................................... TATCGACTTGCCAGAAAATTAATCTGGCTCATTTAA 33795 36 100.0 39 .................................... AGCGAGCTAACGCGATCGCAGAAGCGGCAATCACGAAAA 33870 36 100.0 44 .................................... GTGTTCCGGGGAGGTTGTGTCGTACAGTTGCGTGCGGAGAACAA 33950 36 100.0 37 .................................... AAACAGTCTTGACGTTGATTAGATTAATGAATAAAAT 34023 36 100.0 38 .................................... ACAGTCTAAAAGAAGATTGGCGCAACAACAAGAAAAGC 34097 36 100.0 38 .................................... TGGTTTGACGCGACTTTGTTGAAATAATTTAAAAATAA 34171 36 100.0 38 .................................... ATAGTCGGCGCTAAAGAGTTCCTTGCTTTTTGCCGCCA 34245 36 100.0 40 .................................... TCTCTAGAACTCTAGCTAAAGAGGGATTTGTTTCCTCGAA 34321 36 100.0 37 .................................... AATCGGGCGATATTTGATGAGGGTTTACTGCGGAAAG 34394 36 100.0 39 .................................... TCTTTTGATTTAAACCAACAGCCATTGGCAAATCTTGTT 34469 36 100.0 36 .................................... ATGACATCCGACGAAGAGCGTAAAACAAAATCTATC 34541 36 100.0 43 .................................... TTATACTCCGTAGGCGATAGTGAATCGCTGAAAAAATTTTTCC 34620 36 100.0 42 .................................... TTTATAGACTGGTCGATATAATTACGACAGAAATCTTTTCGA 34698 36 100.0 38 .................................... GACCTAATCCCGGACAAGACACTCACAGTGCTATATCG 34772 36 100.0 43 .................................... AAATTATAAGCCCATATCATTTCAGCCGTGCTATTAGGATTAT 34851 36 100.0 41 .................................... CGAAATGGATAGTTTTCATAGTCTTCTCCGATTTTGATTTA 34928 36 100.0 44 .................................... TTTCCCGGTGTCACCGGTGTCATGGGAATAACTTTCTTTGGCTG 35008 36 100.0 39 .................................... CTATAGAGGAATAAACATAATCAAAGTTAACGACCAAAT 35083 36 100.0 39 .................................... ACACTTGATTTTCGCAGCATTAAGCATTTTGACGATTGG 35158 36 100.0 38 .................................... AGGGTTGCTATTCATAAAGCAGCGCAAGATTTTTACCA 35232 36 100.0 50 .................................... AGTCGATAGCTAACGGAAGGTACTGTTCGCTCTTAAGGTTAACGATTTGC 35318 36 100.0 41 .................................... AGAGAACCTTCTCCTCTTTCTTTGTAACTGCTTCGGGGTTA 35395 36 100.0 38 .................................... GACTCTTGAGGCTTACTTTTAAAGCCTCTATTTCGCGA 35469 36 100.0 39 .................................... CTCATTATACAAAGTGTTATTGAGGTAGAGTTCTCGAAT 35544 36 100.0 37 .................................... CTATTTCGCGAGGCTTTAAATCTTGAAGCAGAAGATA 35617 36 100.0 43 .................................... GACCTCCTCTTGTTGAGAGAGACTTGACTCCGCTTAGTGCAAA 35696 36 100.0 39 .................................... AGTAATTGATACTAAAAAATAGAATTTGTGCTACAATTA 35771 36 100.0 32 .................................... AGTAGACGCGATCGCGGTGACGGTGGCGGTAT 35839 36 100.0 35 .................................... CGCAAGAGCAAGAGTTACTCCTTGAGGCATCGGAG 35910 36 100.0 36 .................................... AGTCGAACAATTTCGGATTCAAGTTTTTGCACGATT 35982 36 100.0 38 .................................... GTGGCGGTATCGGTTGCGATCGCGGTATCAGTTGCAGT 36056 36 100.0 43 .................................... GAAAGCGACTTCTATCATCGCTTTCTCTTTTTTTGTCAGATGA 36135 36 100.0 37 .................................... GCACTGGGAACTAACCAGAGGGCTCGTCCCGTGTATT 36208 36 91.7 0 ...........C................T.A..... | ========== ====== ====== ====== ==================================== ================================================== ================== 69 36 99.9 39 ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Left flank : TGTATTCCCCTTATCAAATTCGCTGATGTTATTTTATGTGGTGGTCTATGACATTCCCGATAATAAACGTCGTCAAAAAGTCCATGATTTACTGGAGGGTTATGGCAAATGGGTGCAGTATTCGACGTTTGAATGTGTCCTGAGTTCAGCTAAGTTCGAGGAGTTGCAAAAACGTTTGCGATATCGAGTGAAGTTGGAGGAGGATAGCATCCGCTTTTATCCTCTGTCCCGTCATACTTCGGGGCAGGTGGAAACCTGGGGGGTGGGGCCACCGATTACTGAGTTTCCCGGTTCGGTGATTATTTAGCTAGTAAGCTGGTCTTGCGAGGCTCACGGAAAATCGCTGTAACTTAGCTAATTCGTCGGGAGCCTCGCAGCCTCTCTGGGTAAGGGTTTCAGGGTTTTATTTTTTGGGGTTTAGCAAAATTGTAGCAACAAAATTGCTGAGGCTCGCAAACCGCCTCTAGACATCTTGCTGGGTAAGGGTTATAATTTTAGCT # Right flank : CTAAATCAGTTAATACTGTCATAAAGGAGAAAAACTATGGTATGGTGGGCTGCTCTTTTGTTTACATTTGGACTTGTTACTGTGGGATTGTTACTACCGAATCCAACGATATCGTTAATTGTTCTAGGTTCAGCGATTTGGGCAGCGTTTGACTCGTCGAAAATTAATTTGCATAAGTACAAGTCAGGGATTTCTTGTAAGCCAGTAATACTTTTCATTTGTATAGTTGCACTTTGGATTATTGCTTTTCCCTGGTATTTGATTGTTCGCGGCAAAATTTTGGCAGGAAAGGCAGTTCTTAAAGATAAATTCCGCTAAGAACCCAGAAACCGGGTTTCTTCCCCAAATATTTGCCGAAGTCCAAAAATAAAATAGAAACCCGGTTTCTTCTTTGCATAAGGGCGAAGCATTCCGGTCATAAATTTCTAGTTTTTTCCCATAATTTATCCGCCGGAATGCTTTGCCCCTACCCAAATATTTGCCCAAGTCCCAAAATAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2782-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000010.1 Planktothricoides sp. FACHB-1261 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2781 37 100.0 35 ..................................... GTCGCGATCGCGCCCGGTACAGCTACCGGCGGAGG 2709 37 100.0 37 ..................................... TTGATTCGATTGCCTTTAGTGATTTCTACGATTGGCA 2635 37 100.0 37 ..................................... TTAAGGTAAGTTACGCAGAGAATGCCTGCGGGAATAT 2561 37 100.0 35 ..................................... GCGATGATGGCCATGTACTAAATGGTAAGTTTCAC 2489 37 100.0 38 ..................................... ACTGGTGCCGCAACTTTAATCAGCGGCGATCGCTATTT 2414 37 100.0 37 ..................................... AAATCCCTCGATGTCTCTCACTTCCAGAGATTTAAAT 2340 37 100.0 35 ..................................... TTATCGCCACACGATACAAATTAACCAGCAAGTCA 2268 37 100.0 37 ..................................... CGGTCTTGACAATGCCATTCTCCCGATCGCCATATCT 2194 37 100.0 37 ..................................... ATTGGTTGGTTGTTGGTTTGAGTTAACAAATAAAAGA 2120 37 100.0 38 ..................................... CAATTCTTGGGGATTGCTTCACCAAGCAAGGGTGTCAG 2045 37 100.0 38 ..................................... GTATTATGTATCACGGGCTACTCATAACTTTCTCTCTA 1970 37 100.0 35 ..................................... ATATTATCACAGGTGAATTGAAAGCATTTGTTAAC 1898 37 100.0 34 ..................................... AGCTTGCAAATTCAGGGCTTGTCTGGAGTCACTT 1827 37 100.0 38 ..................................... AGTAGCGTGGACACGCACCAGCCCGGAAATAGCCGAAA 1752 37 100.0 35 ..................................... GAAATCGGCTGCGGAGAATATATCTGGCTTTTCGC 1680 37 100.0 36 ..................................... TGTTAATCAAGGTGAAAATATCATGGGCAGGAAAAA 1607 37 100.0 38 ..................................... AAATATGTTGCCAAAACTGTTAAATTAATGTACATTAA 1532 37 100.0 37 ..................................... CTTGACTTGCTCCAGTACACAGGGGAGCGGATCGGAG 1458 37 100.0 36 ..................................... CGGGAAAAGCTACACATTCATTGTAGGTTTGTAAGT 1385 37 100.0 37 ..................................... CTCAGTTGTAGTCAATAAAGGTGATTGTTTCTGCATG 1311 37 100.0 36 ..................................... TTTGTGGCTTCCTCTTTCAAAATCCCAGCAGACACA 1238 37 100.0 35 ..................................... TGCCTTTTTTTAGATATAAAAAGGGCGGCGCTGGC 1166 37 100.0 36 ..................................... ACTTACGCGATGCAAACCGCGATGATGGTCAGAAAG 1093 37 100.0 34 ..................................... GGCGAGATAATCTTCTCATCATGCCAACGAAAGA 1022 37 100.0 38 ..................................... TTCAATAAAATTTTCAACTTCAATTTTGGCGCGATCAC 947 37 100.0 36 ..................................... CATTTTTACACTTATTACGGAGTCTAACATGAAATT 874 37 100.0 37 ..................................... CAGAAATAAATGGTTAAACAATGAATAAAACAATGCG 800 37 100.0 35 ..................................... CCTGAAGCTTATTCGATGTGGCTGAATAATCAGGG 728 37 100.0 37 ..................................... GCCATTCAGGGATTTGGCTGTCCCGTCCAACTCGCTA 654 37 100.0 34 ..................................... TTAGGTGTAGAAGTAAATTCAACTTTAATTCTCT 583 37 100.0 35 ..................................... GCCGAGGACAATCGGACTAAGTATTATTTATACAA 511 37 100.0 38 ..................................... AATCTGTGCTCGATGTATGCCGACATCTATATAGTGTG 436 37 100.0 34 ..................................... TCTCAGATGAAAGCTTTAACTAATCTTGTAACTT 365 37 100.0 36 ..................................... CGGATTTTTCGTGCCGCCAGAGTACCGCCACAAACT 292 37 100.0 38 ..................................... ACAAATTATCAAAGTGCATTGCAAGCTAGTTTTGACTC 217 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : GAGACTACAGCGATAGATTTAGACCATGCTGCACGATGCCATTTATTTTTTAGCTACCTAAATCCTGTTCTAATAGAGGGGCAAGAAATTTTAGACGCCTATGAATACGATGACACGGTGATGTATTGACGACATCAATATCTTTGAAAGCTTGAAGTAGTAAAAGCGTTGCCAGCATTTTTTACAAGAAAAACGGTGGCAACGATATAAGAGGCAATAGTATGAACTTTTATCAAATTGGATATGCGATCGCTGCGGTCTTGTCCCAACCACCAACATTTTTCCCTGTGGACTTTGGGGTGAAAAAACGCAAGCAATGCCAAACCGGGTACACTTGCGGCGGCTCTTGTATTAGTACCAAGAAAAAATGCCGAGTGGCTTTGGCTGGAGATGCTAAAAATTTTGCCCAATATGTTCGCCAAAACAAGGGTAAATTAACAGCAATTCAGCAACAAAAAGCCAGGTCTCAAAATATTGGATTAAAAGCGGGGAAACGTATT # Right flank : CAACAAAGAAAGCTTTTGCAGAATTGGAACTAGAAGGTTGCAACTAAGTAGGTAGGTACAAAAAATCCTATGTAAAGATAAGTAAAGACCAGTCAGCTCGTTGGAGGAAAAAATTATGGGCGCTCGTCTGAGAGTATTTCTGACCCCGGAAGAAGATCGAACCTTGTTTGAACTTAGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 5692-3460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000010.1 Planktothricoides sp. FACHB-1261 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5691 37 100.0 37 ..................................... TGATGGTTGCAGCAGCCCATTGCCCCCCGCGCTTGGT 5617 37 100.0 36 ..................................... CCGAGCCTGGATTTGTGTACCTCATTGATATGAAAA 5544 37 100.0 35 ..................................... AAGCGGGTACGCTTGCCAAAGTTCGTCGGGAAATA 5472 37 100.0 37 ..................................... AAGCGGGTACGCTTGCCAAAGTTCGTCGGGAAATAGG 5398 37 100.0 37 ..................................... TGTTCGCCAACTATCAACAATCCTTTGTCGATTTTGT 5324 37 100.0 35 ..................................... ATCAAAACCTCTAATGATTGCCAAAGCTCTTTGGC 5252 37 100.0 38 ..................................... TTGGGTGCATCCCGACTCTACATGAGGCTTCGGGAATC 5177 37 100.0 34 ..................................... TTCGCCGACTCCGACAAATATTAATTTCCCTATT 5106 37 100.0 35 ..................................... CGACCGGATATCCTAATGGAGACAAATCTAAGTCT 5034 37 100.0 38 ..................................... CCAAAGCCTAGAATGACGAAATCAGATCGCTGGAAAAA 4959 37 100.0 35 ..................................... TTCGTTCGCTTGGTGTGGGCAATTAAGCAGAGAAT 4887 37 100.0 34 ..................................... AAATTCTTCAAAGTGACTTAGTTCGTGAAAAATA 4816 37 100.0 37 ..................................... TACTTCAAGAGGAGTTGATTAAAATATGACGCTAAAA 4742 37 100.0 38 ..................................... AGGGTAGGTAGGTAGCGAGTGGCAAGTCTGTAACCGAG 4667 37 100.0 38 ..................................... TCGCTTGACTTGCAAAAGCTTAAGGTTCCATGTCACGG 4592 37 100.0 35 ..................................... AAGCATTGGCACGAATTCGGTATAACGCACCGAGA 4520 37 100.0 37 ..................................... CAAGAATCCAAGATTCTTGGACAATTTCAGGCACTTA 4446 37 100.0 36 ..................................... TGAGGAATTCTATTTTCGCAACATTGTGCGATGGAA 4373 37 100.0 38 ..................................... TTGCCCGCGATTGCTGATGACCAAAGAAAGCAGATGGC 4298 37 100.0 34 ..................................... CGGCACCCGGATAGACCGGGTTTTCCCACCTTTC 4227 37 100.0 38 ..................................... CAACGAATGCGAGGCATGGCAGTGCCGGAGCCAGTGAG 4152 37 100.0 39 ..................................... ATAGAATGCGATCGCCGCCTCACCCTCACCCATCGGCGC 4076 37 100.0 33 ..................................... GCGGGCGATCGCAGCCCACCTTTCAGAATTAGG 4006 37 100.0 36 ..................................... AATTTACCAAATTGAAAAAACCACGGAACGCTATAT 3933 37 100.0 38 ..................................... GTTAACGACGCGGAACAGGCAACCATCAATCTAATTTT 3858 37 100.0 37 ..................................... GCCATTTTGTAATCGGCTTTGTATATACACACAAAAA 3784 37 100.0 36 ..................................... TTGGATGGCGATCGGGATAATTGCGATTGAATTAGT 3711 37 100.0 33 ..................................... TGGGCTAAGGTAGCCCTATATAGGCTGATTTGG 3641 37 100.0 35 ..................................... CAATCAGGGGGGTTTTTTGTTGCCAATCACCCCAT 3569 37 100.0 36 ..................................... AATGACCTGAGCCAAAGCAGCTTGACCGCCGATTTG 3496 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : TGGACAACCGGGGAGTCGTGTTTGGAAACGATATCTGAGTGAAAATGCTCATGTTCCTGGGGCGGGAGTTGAGGTGATTCTGGCGGCTTTAGCCCAAGTTCCTCCCCCAGAGATGGCCGGTTTAACGGTATCAAATATTTGACAACGGTCTGAATCGGCTAGGTTATGGGGATGGGTGCTTATCGGTTTTGCGGTTGGTTATGGGCGGGGTATAATAGAGGTTGACCCGCAATCTGCGTCAGGGGATATTTGCGCGGAGGGGTGGGTGTAAAAACAGGGCAGGGCATTTTTTCCTCTGAACTGTTTATGGGGTCGAGGTTTGAGAGTTTTTGAGTCTCGAACCGATCCGCGCAAATCCTGAAATCCTTTGTGAGTCAGGGTTTTGGTTTATTCAGGTTTGAGGTCTGTTGACAAATTTGGGGGGTTGCATGGTATGATGAAGTCGATTCGCGCAAATGAACCTGGAAAATTAAATAAATCAAGGGTTCCGAGCCCCGGCC # Right flank : CTAAGCAAAAATGATTATTTATCAAATTGGCAAAAACAAAGTCATTCTGAATGTTTCTTCCCCAGATGACTCATCCGAAATTCAAATTGAAAACAATACAAATGACGAAGCTTTAAAGTGGCTAAAAGAAGATTTTGAACAAGGCTGGTATGGAATTCACGGCAATCTTCAGTCCTTAGAGACTACAGCGATAGATTTAGACCATGCTGCACGATGCCATTTATTTTTTAGCTACCTAAATCCTGTTCTAATAGAGGGGCAAGAAATTTTAGACGCCTATGAATACGATGACACGGTGATGTATTGACGACATCAATATCTTTGAAAGCTTGAAGTAGTAAAAGCGTTGCCAGCATTTTTTACAAGAAAAACGGTGGCAACGATATAAGAGGCAATAGTATGAACTTTTATCAAATTGGATATGCGATCGCTGCGGTCTTGTCCCAACCACCAACATTTTTCCCTGTGGACTTTGGGGTGAAAAAACGCAAGCAATGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 67491-58258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000023.1 Planktothricoides sp. FACHB-1261 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 67490 37 100.0 37 ..................................... AAATCTCTTATCCATACCTTCGGGCCGTTTTCTCATT 67416 37 100.0 38 ..................................... TGACAAGATAGCTGAGGAACTTTTAGGCAAAATTGCAG 67341 37 100.0 36 ..................................... ATCGGGCAAGTACCGGCCCCCGCGAGTGGCTGTATG 67268 37 100.0 37 ..................................... CCCGAATTTATCGGCAAAAAACTCGATTGCGCGATCG 67194 37 100.0 37 ..................................... GAAACTGCCTTAAAAGAAGGCAAAAAAATCTTTTTAC 67120 37 100.0 35 ..................................... AGATATTTCCATCAATTTTATCAAAAATATTTGTG 67048 37 100.0 34 ..................................... ACAGTGTCGGCTACCGAGCTGAAACACAATCCCT 66977 37 100.0 34 ..................................... TGGCCAAAGCTATTTTAAGCAGTTTGGACAGATT 66906 37 100.0 34 ..................................... GAATCTTGCCATTGGTCAAAGTGCGCGATCGCGG 66835 37 100.0 34 ..................................... CCGCTCACTCCAACAGAATATAGATTCATTGCTT 66764 37 100.0 34 ..................................... TGATTAAATTATAGCTTGCCCAACCAAAAAGAAA 66693 37 100.0 39 ..................................... ATTTCTTTTAGCCCATATTCTAGATCCTTGTACAGACAA 66617 37 100.0 39 ..................................... CAGAAGCATAAGCATTCATGGACATACCCAAGTCTTCTT 66541 37 100.0 37 ..................................... ATCATAATTGATAGTGACTTCCATCGTGCAATCGCCA 66467 37 100.0 34 ..................................... AATCAAGCTACCAAGCCATGATGAAATTGTTGCC 66396 37 100.0 38 ..................................... TTAAGTATTTCCATTAGGATTTGATCGTTGGCAGATAA 66321 37 100.0 38 ..................................... AACTATCTTAGGATTCAAAGAATTTATCAATTATCAAA 66246 37 100.0 38 ..................................... ACTGGTGATTGAAGTGACAATCCGAGATTCACCACTTT 66171 37 100.0 40 ..................................... TTTACCTTCTAGTTGCCCGTAATCAGCGATCCGTACTTCC 66094 37 100.0 36 ..................................... CCTGCTAAATCAGTACATCCGGCAATGCTTGGAAGC 66021 37 100.0 38 ..................................... ATTTTGACAGTAAAATGGATCCATTTATATCATTACAT 65946 37 100.0 37 ..................................... CCTGCTAAATCAGTACATCCGGCAATGCTTGGAAGCG 65872 37 100.0 38 ..................................... TGGACTAGAGAGATAGGGGCGCCATTATCTAGAGAATG 65797 37 100.0 39 ..................................... TTAGACCTATTGGCACTGCCTAGGTAGCTTTGGCCTACC 65721 37 100.0 35 ..................................... TTTTTTGAGCGATCGCACCCGACCTCCTACACCCC 65649 37 100.0 37 ..................................... AGAATTACGCCTTGATAAGGCTTATAGCAGATTCTGA 65575 37 100.0 38 ..................................... AAATTAGCGGTCAACGGGCAACGCTCTAACGTCGAAGG 65500 37 100.0 35 ..................................... AGAACTGTACGAAATAATCGAATCTACTGATGATA 65428 37 100.0 37 ..................................... GGCAATCTGCAATCAATAAGCACTCTATAAAGAAAAA 65354 37 100.0 36 ..................................... GATTTTTCCGTGATGTAGCCATGTTCTACTAACTCC 65281 37 100.0 38 ..................................... AATTTGTTGGTTTAGTTGTTGATTGACCAATCCTAATT 65206 37 100.0 36 ..................................... AACCAATGGCATCACCGCCATCATATAGCTATTAGA 65133 37 100.0 36 ..................................... GGGCATCAAACAAGCCACTCTCTACCGCTATCTCTG 65060 37 100.0 35 ..................................... GTATTCGCTCAGTAACGCCGCCATTTTTTCCTTTT 64988 37 100.0 34 ..................................... CGATAGCCCTAACAGGTATCGCGAAAAAGCCGGC 64917 37 100.0 38 ..................................... GCAATCAAGTTGGATCGCCTTTTCCGTAATGCAGCCGA 64842 37 100.0 36 ..................................... TTTTATATTGTGTAGCATACCCATGAGTAGGATGTA 64769 37 100.0 33 ..................................... TAGGGCGATCTTTTCTGAGTTTAGCGATCGAAC 64699 37 100.0 33 ..................................... AATAGAAAATTTTGAAAAACTACCCTGCGAAAG 64629 37 100.0 35 ..................................... TTAAGTGCCAGAGATAACGGTACAAGGTAGCTTGG 64557 37 100.0 38 ..................................... ATTTGGGGGGCAATTTTTTTGCTGCCATAATATGAATT 64482 37 100.0 38 ..................................... ACTGGTAGAGCGCCTAGGCATCGCAAAAACCACAAAAG 64407 37 100.0 38 ..................................... ACTATTCCGTTATTGACGCGGGCGAATCTCACGTTAAA 64332 37 100.0 35 ..................................... GGTTGGTTAGTTGAATTGACATAAAGTAGGCTATT 64260 37 100.0 37 ..................................... TAACTCAACTTTGACCATGCCGCCGGAGCAATAGGTG 64186 37 100.0 38 ..................................... ACCCCACAAGTACGAACCGGGCGGCATTGACCAGTGGC 64111 37 100.0 39 ..................................... TGCCACTAACTCACCGGCGGCGGCGATCGCTTTTCCCCA 64035 37 100.0 37 ..................................... AAACTCTGAGAAAAATTGCTCTAGAGTCAAGACCGTT 63961 37 100.0 38 ..................................... TGATGGTTGCAGCGGCCCAAACACCCCCACGCTTTGTG 63886 37 100.0 38 ..................................... CTGATTACCCCACAAGACCTGATCGAATACGATCCGGA 63811 37 100.0 38 ..................................... AATTTGCAATCTCATAAAACCATGCCCTCAACGTTAGA 63736 37 100.0 38 ..................................... TGGTGGTAGCTTTATCTAGGTAGCAGTTAAGTCAGATG 63661 37 100.0 38 ..................................... TGAAGGCGCCGCCCCAACACAAGGCACCCCCGCCGGTG 63586 37 100.0 34 ..................................... TTTTCAAGACAACCAACTAGCCCGCGATAAATGC 63515 37 100.0 35 ..................................... TTTGGGGTTATGCCGCATCATCGTCTGGGATCCAT 63443 37 100.0 38 ..................................... TTTGATTTTCCGGGCGGATCCGAACAAAAAGTCAAGCA 63368 37 100.0 37 ..................................... TGGTTTTGTTGGAAGCAAAACCAGACAGACTTAAAAA 63294 37 100.0 37 ..................................... CAAAGCGGTAGCTAGATAGTGGGCTGCATCTGCGATC 63220 37 100.0 37 ..................................... ATGACAACAACCGAACGGTTGTTAACAGATTTAGTAA 63146 37 100.0 38 ..................................... TACAATAGCCCTGATTTTGGCTATGGGGTGAGGGCGTG 63071 37 100.0 37 ..................................... AAGCTAAAACATCAAAAAACGACCCAGAAAAAGTAAT 62997 37 100.0 38 ..................................... ATGGCGATCCGCGATATATCCGCCAAAGACTTAAGCCA 62922 37 100.0 38 ..................................... TTGGCAGTATTTCTTACCTGTAGATTTTTTATGGTTCA 62847 37 100.0 37 ..................................... TTTTGGGTGGATTACAAAAAAAGACTAGATGACTGGT 62773 37 100.0 45 ..................................... CGGTGTCTGTGGGGTCGATGCTTTTACCCTCATCAGCGATCGCTT 62691 37 100.0 35 ..................................... TTATTTTTAATAAAAATCTATTTTTTGTCGGAAAA 62619 37 100.0 37 ..................................... ATTTCGTTGATGGCAGAGATGATCTGATTTAGGCGAT 62545 37 100.0 36 ..................................... GTCGGACGGGATAGAGTCCAGAGCGGTAGCCAAGTA 62472 37 100.0 36 ..................................... AGAGCGCGGTCACAGATGACACTCGATCAACTAAAT 62399 37 100.0 37 ..................................... GGCAATTTGTAATTAATAAAACTTTACAATATATTGA 62325 37 100.0 38 ..................................... GTTGGCAGTCACATAACACGGCTGTAAAACTGCGAGAA 62250 37 100.0 37 ..................................... ATTTAGGGCATAAACAGCACTTAAGCAATCTTCAAAA 62176 37 100.0 34 ..................................... GCTTAGGCTCAAATTCTTTGGCTTGCATTTTTAA 62105 37 100.0 35 ..................................... TACTTTTCAATCTTTTCAAAAGTTTATTGGACTTA 62033 37 100.0 38 ..................................... TTTACCGCATAAATCGGAAATATTTCCGAAAAACGTTG 61958 37 100.0 35 ..................................... AATCGGGCTTACAACGTGCGATCGCTGCACTCAAA 61886 37 100.0 37 ..................................... ATGAGTACCACCCAGCAAGCATATCGGATTCATTCAT 61812 37 100.0 39 ..................................... TGAATATACGGTATTATATAAAAATTTCAATATTCCATT 61736 37 100.0 38 ..................................... GAACAGATCGACTTAGGACATATCAAAGAAGCGATCGC 61661 37 100.0 38 ..................................... CTTACTGAAAGCTTTAACCCGAAAATGCGAAGGGCCCG 61586 37 100.0 37 ..................................... CACTACCCGAACCGGAAACGGACGGACGCTGACCAGG 61512 37 100.0 37 ..................................... CTATATATCAGAGTTTCGACTGATGAACAGGCAAGCG 61438 37 100.0 38 ..................................... ATGGGGTGGGGGGCGATCGCTTAAAAAAAACCAAAAAG 61363 37 100.0 33 ..................................... AAAGCGTGTACGGGGTTGACTTTGACGCTGACG 61293 37 100.0 38 ..................................... ACCTTGCCCCGATTTTGCCCCTCTGATACGATCGCTTG 61218 37 100.0 38 ..................................... GGGGTGGGGGTGTATTCCTTAAAAAAAACCAAAAAGAT 61143 37 100.0 38 ..................................... ATCATCAGCAAATTGTTGAGCAGATAAGCGACTGTCAG 61068 37 100.0 38 ..................................... CAGGTTGACTCTGACCATGCCGCCGGTGCAATAGGTGA 60993 37 100.0 37 ..................................... CTAAGGCAATCATTGATATCTGGTAGTATTTAGCGGC 60919 37 100.0 38 ..................................... TTTGCTTGCCATGTTTGTATTGTAGCACAAGTTTAACT 60844 37 100.0 36 ..................................... ATCCGACGGGATAGAGTCCAGTGCGTTGGCTAGATA 60771 37 100.0 37 ..................................... ATCTGCTCTCATTCTGGTAAGTGGAACCGGCAACACA 60697 37 100.0 35 ..................................... GGTTGTTAGTTGGTTGCTGGGTGTAGTTCACAAAC 60625 37 100.0 37 ..................................... TTGAATTGATTTACCATTCAAAAATAATTGCCCTACA 60551 37 100.0 34 ..................................... ACAGAACTAGAACTCACTGAAGATAAATTTTCCG 60480 37 100.0 37 ..................................... CAAATCTCTTGTAGCTCTGGGAGATACTTTGCACGAA 60406 37 100.0 33 ..................................... TTCCTGGGGCAATTTTGGCAGCGGGCGATTTTA 60336 37 100.0 37 ..................................... GATCGCTGGTTTCGGGCGGGGCTGGAGAGAGCCGGTC 60262 37 100.0 38 ..................................... GCTAGATTCATTACAGAACTATCTCGACTGCGGGGATG 60187 37 100.0 34 ..................................... CCGCTCGCGTTCTCATCTCCACCCGAAGCCGCTA 60116 37 100.0 36 ..................................... AGCAACGGGCAAAATCTACCAGCGATCGCATCCCCA 60043 37 100.0 37 ..................................... GAGTTCCCGGAGAGGCCAACTTTAAATTTGTACTGGG 59969 37 100.0 38 ..................................... AAGAAAACATCTCTTTACGGTAAAAGCATGATCCGAGG 59894 37 100.0 33 ..................................... GAATCTGTAGTTTTGACTCTGGTGTGGGGTGTG 59824 37 100.0 36 ..................................... GTTTCGGGATTGTAGTATTCATCTCGATACAGCATG 59751 37 100.0 37 ..................................... GTCGAAGGCGATCGGTGCGGCTTTAGCAGCCGCCAGT 59677 37 100.0 36 ..................................... CTCCGCCGTGCCTGGGATTATTGTAGTGATCGCTTG 59604 37 100.0 35 ..................................... AAAAATTGTGTTTTATTGTGAAAATTATGGCTATT 59532 37 100.0 35 ..................................... ACGATCACATTCCCATCGGCGATCGCTAATTCAAT 59460 37 100.0 35 ..................................... TCAAAAAAAGAGTGGGATTTTAGTAAACCAGAGAT 59388 37 100.0 35 ..................................... GGGTGCGAAAAAGTTAGTCGCGGTGGCTGGCTGAT 59316 37 100.0 38 ..................................... GATCGCTGGTTTCGGGCGGCCCTGGAAAGAGCCGGTCT 59241 37 100.0 37 ..................................... CACGAGTGGGAATTTTTAGGCGAGATAGTGAGTCCCG 59167 37 100.0 37 ..................................... CAGACTTTTTCTGGTGGGGAAAAAGAGGAGGAATTCA 59093 37 100.0 36 ..................................... TAGAATATCAGAATCGCTCACCCCAGAATCCAGCAA 59020 37 100.0 35 ..................................... ACCTGAAAGCTTGAAAATTCGCTTTAATCAAGATG 58948 37 100.0 36 ..................................... TTCTCCGGCAAAATTTCCAAATAATTCTGCCTGTAC 58875 37 100.0 37 ..................................... TTCAGCAAATCGAAAGTCACCGAGTAAAAAATTACGA 58801 37 97.3 34 ...................A................. AGGTAATACTAAATTACTGCAATCATCTGGCTTG 58730 37 100.0 35 ..................................... ATAAATTCATCTCCTCCTTTGGAACAAATTTGGAT 58658 37 100.0 35 ..................................... TTTAATTCTTCTCAGATTAAATTTCAGTTTGACGA 58586 37 100.0 35 ..................................... GCCAACCTTGACTTTACTTAAAAACGGGGTGAATT 58514 37 100.0 35 ..................................... AATTACAAAATGACTCAAGCAAAAGCTTTGGCCAG 58442 37 100.0 36 ..................................... CGCGATTGAAGAAGACTACACCTTAAATTAATGAAA 58369 37 100.0 38 ..................................... GATGATTTCTTGATCAGCGTCCGAGCGGTCAAACTCTG 58294 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 126 37 100.0 37 GTTGCAACTATATAGAATCCCTATCAGGGATTGAAAC # Left flank : ATGCTCGCTGAGTGAGACGGAGTATGCGAAGTTACGGGCAAGATTGAGTAAGTTGATTAAGTCAGAGGAGGATAGTATCCGGTTTTATTTTCTTTGTGGCTGCTGCCAGGGTAAAATAGAACGAATTGGGGGCGAACAGCCAATGGATACGACGGTATTTTTTGCCTGATCCCATGACCGGCGCCCTGGAGTGGCTGGCTAACCGGCTTTCCCGGAAGCTTCGGTTTGAGGATGAGATGAAGCGGTAATTTGCGCGGAGGGGTGGCTGTAAAATAAGCCCAGGGGATTTTTTCCTCTGAAGCCTTTACAGGGTGAAGGTTTGGGGCTTTAGGATTGGTGAACCGATTCGCGCAAATGCTGAAACTCTCTCCCCGCTTAGGTTTCCCCTGATTCGTGTTTGAGGCATATTGACAAGTTTTGGGGTTTTCATGGTATGATTAACTCGATTCGCGCAAACGAACCTGGAAAACTAAATAGATTAAGGGTTCCGAACCCCGGCA # Right flank : AACGATCGCACTTATTTGGGCGCTACGTCCGATCGCCCAAGTAAACCTTGAAATTGTAGCTTTTTAAAATTGGTCAAGTAGTCGGTTTTAACCGCCTGTAGGGGTCAACGGCCGTTGACCCCTACAGGGATTTTAATCCCCGCCGAATTTTAATCCCCGCCGGATTTTAATCATCGCCGAATTTTAATCATCGCCGAATTTTAATCCCCGCAATCGTCGGTTAATTGCGGGGGTACATAAACCGCCAGAGGTTAAAACCTCCGGCTAATAGCGCAAGTCGGTTAAAACCGACTCTGGATTATTTAGAAATTGGTAATATTATTTACAAAACATTATGCAATTTTGGCGCTACATATCACCGTCTAAATAAACATTATAATTGTAGCAATAGGTTGTAAAATTGGTATTAAATGACTAATTTTTTTTTAGTTTTATCCGCAAATTTATGCCTAAATGAACCCATTTTCGTAATTCCCATACTCCCTTTCATTTGATTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATAGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 13213-17771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000048.1 Planktothricoides sp. FACHB-1261 contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 13213 36 100.0 37 .................................... AATGGTTTTTTCTCCTGCATTTCAATTTGCTGCCCCA 13286 36 100.0 40 .................................... ACAACGAAAATTTAAGCTAGTCATGTTTTACCCTCATTGA 13362 36 100.0 43 .................................... GCGCCGTAATGAAATAATGAACTGATTCAGCCAATTGACTTAA 13441 36 100.0 43 .................................... ACGACGAAGATAAAGCAAGCCAATGGGGGAAGCTTTTTTTTCA 13520 36 100.0 44 .................................... ATCAGGGGAAAAACAAATATACCACCATTCACTACTTTGTTTAA 13600 36 100.0 40 .................................... TGTTGTCGAACTTTTTTGATGCCCAGCCATCTTTGGTTGC 13676 36 100.0 40 .................................... GACATCTAATTGCCAGTGACTATATTTTTCTGCATGAGTT 13752 36 100.0 38 .................................... TTAAAGAAAATAATTTGCCTTCACCCAAAGAAATTATT 13826 36 100.0 40 .................................... TGCATAAAATTGCTGCCAGTCAAAATTGACAATACTGGGG 13902 36 100.0 41 .................................... GCAGGACGATGGAATCGAAGCAGTGACAATAACATTATTTC 13979 36 100.0 48 .................................... ATAGCCATTTTGATGATTCTCCTAAGGAGTATAGTTTCACTTAGAAGA 14063 36 100.0 38 .................................... CTATTAAGAGGTTTAGCCCCTTGATGATTACCTGCAAA 14137 36 100.0 41 .................................... AACTACTAAGGTTACTGTGGACTTACCGCAAGCAGCGGCAA 14214 36 100.0 38 .................................... GAAGCTAGGGCCATATGTACTCGCATACCCTTGACCAT 14288 36 100.0 40 .................................... ACTTTCAGTACTCAGAAGATGGGGAATATTCCATTGTAGT 14364 36 100.0 32 .................................... TGGAAGTTTTTCTAAGTGTGAAGGGGTATCAG 14432 36 100.0 38 .................................... GTCTTACCCAGCGGTTTTTAGCTATGTTGGAAGGAAAA 14506 36 100.0 37 .................................... ACAAAGAAGCAATTATCTGTTGGTTTTGTTGGGTGAC 14579 36 100.0 38 .................................... ACGACAGCAACAGCAACAACTACACAAAACCATAACTA 14653 36 100.0 40 .................................... GCAAAGTGAGAGAATGGCAGCGGGTGACGTGACCAACCAA 14729 36 100.0 39 .................................... TATTCCTACCCCTCTCAGTACTCCTTTAGTTTCATCTGT 14804 36 100.0 39 .................................... TGCCAAAGGGTTCCCCCCCTCTAGATATGCTTTGATCCA 14879 36 100.0 39 .................................... GGTCAACTGCCTCTTCCTTTACGGAAGGGCATTCAATTT 14954 36 100.0 41 .................................... ATATAAGCTAGACATGACGAGATTCCTCTTGTGTTTACATT 15031 36 100.0 39 .................................... ATCTCGTGGCTGCGTCGCCACGTAGAGACTTTTGTTAGC 15106 36 100.0 38 .................................... GATTTCCTGTAGAGATGTCCTCTACTTTGATTCCATAT 15180 36 100.0 37 .................................... AACAACTATCTTCTTAAAGACTTGACTTTTAGGTCAG 15253 36 100.0 41 .................................... TGTCCGCCAGAAGGGTAGTAGACCTAAGTCTACCAAGGATG 15330 36 100.0 38 .................................... GCTTGTTGGTGCGATTCCGGTACTTTTTCCAGGGCATC 15404 36 100.0 40 .................................... TGAATCGATTCTGAGAAGACGTTGTATCCCACTCAACAGA 15480 36 100.0 41 .................................... CGCGGTTTGTTCTGGCTGCGGTTGTGGTTGCGCGATCGCGG 15557 36 100.0 40 .................................... GACTCAAATGTTAATTTAATCACGTCATTCTCAGGATAGG 15633 36 100.0 38 .................................... GTCGGGTCTAATGCAAGCAACGCCTTTTTCTCTTGACG 15707 36 100.0 37 .................................... TATGAATAGCAGCCCTGATTTCTGGGTCTGTAGTCCA 15780 36 100.0 38 .................................... TCTTCTTCAGAAAGAAGAGCGCATGGAAAAAGGTTGTT 15854 36 100.0 40 .................................... AGTTCCCACTCAGGGTAGGAATCCTCCTCTTTAAATAATT 15930 36 100.0 35 .................................... AGAGAAGTGGGCGATATGTTATTGGATGTTATGTC 16001 36 100.0 39 .................................... CGTCAAAAATCCATTCTTGGCCTTCGGAGTTTTCATCAA 16076 36 100.0 38 .................................... AGGGATGTGGGTGAATTTTGGACAACTCACGGGGAAGA 16150 36 100.0 35 .................................... ACTAAGATTATCAATTTTTGCTCCCTTTATTAACT 16221 36 100.0 40 .................................... ATCAAAATCCTTCTGATTTCGTTTTTCGTTGATATTCTAA 16297 36 100.0 43 .................................... GCATCCAATATGCGCGATCGCGGTTTTAAGTTACTAGATTATT 16376 36 100.0 40 .................................... AAATCCGTGATGTAGAATGGCGGCTGCCATCCTGTTTCGT 16452 36 100.0 40 .................................... GTCTTTTCTTTTGCTTCCAATAAAGCAATTGTGCGATCGA 16528 36 100.0 44 .................................... TTTTCTCTCTTGCTTCCAATAAAGCAATTGTGCGATCAATATTT 16608 36 100.0 43 .................................... AAATACAAAATTATTGCTATACAAAAAAACAAGCACTAGAAAA 16687 36 100.0 45 .................................... AAACAGGAACAAGCTTTGTAAGTAAGGTAGTTCAATACCTTAAAA 16768 36 100.0 37 .................................... ACTCCCCGTCCGTATTCAAGGATGGGACTTCCATCCT 16841 36 100.0 45 .................................... TTGAATCTGAATTCGATTCCCACCTCTCTCATTCCCTCTCCCTCC 16922 36 100.0 34 .................................... CCTCCCTTTAAAGGGAAGAGACTATATATATTTG 16992 36 100.0 40 .................................... TCCCGGATATTGACAGTAGCTCCTCCTATCTGGTGAGCAA 17068 36 100.0 38 .................................... CGCATACTCTTCTTGTTTCTCCTTGAGTTCAAGTTTCA 17142 36 100.0 37 .................................... TTACTTCGTGGGAGCAGCTTAATTGCTCCCAAATTAT 17215 36 100.0 36 .................................... TCTCAGTCACACGAGAAACGCTTCCATCTTCATAGG 17287 36 100.0 38 .................................... TGAGCTTCCTCAATCAATTCAACGAAGCCAGCATTTAA 17361 36 100.0 40 .................................... TCCATATCTTATCGGTAGAAGGACGCCAGCTTTGGAGTAA 17437 36 100.0 37 .................................... AGATAAAGGGTTAGGTTAAATACAAATATCCATCATA 17510 36 100.0 39 .................................... AGATAGAGACCTTTGACCCGTTGGTCTTAACACCGATAC 17585 36 100.0 39 .................................... AGGCCGGTAAGACCAATCCTAAAGATTGGCAGAAGTTGC 17660 36 100.0 40 .................................... AGGAGAACCTCTTAAGGGCTTTGGTGGAATAGCAAACCCA 17736 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 61 36 100.0 39 ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Left flank : CTGAAAACCGCTATAAACTAAAATAGAAACCGGGTTTCTGGGTTAACCCTGAAAACCACCGTAGGGGCGATTCGCGAATCGCCCCTACAATATTTTAAGCAATAACTTGTCTGCGGTCATGCTTCGCCCCTACCCCAAGAAACCCGGTTTCTTGCGTCAACCTTTGCCGAAAACTTAAACCAAAATAGAAACCGGGTTTCTGGGTTTTCCTGGGTTAACTCCCAGCCCAAGAAACCCGGTTTTGTGCGTCAACCTTTACCAAAAACTCAAAATAGAGACCGGATTTCCCGATAAAATAAATAACTAGCTAGTAACCTGGTCTTGCGAGGCTGGCCAAAAATCCCTGAAACTTAGCTAATTCGTCGGGAGCCTCGCACCCTCTCTGGGTAACGGTTTCAGCGATTTTTTTTTCGGGGTTTAGCAAAATTGTAGCAACAAAATTCCTGAGCCTCGCAAACCGCCTCTAGACATCCCGCAGGATAAGGGTTATAATTTTTGCT # Right flank : CTCCATTCAATTAAACGATGCAGTTAAGAAACCCGGTTTCTTGCCTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCCTTGCGGAAAACCTAAACTAAAATAGAAACCGGGTTTCTGGCTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCCTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGCTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCTTTGCGGAAAACTTTTTCTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCTTTGCGGAAAACCTAAACTAAAATAGAAACCGGGTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 154-1467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTF010000065.1 Planktothricoides sp. FACHB-1261 contig65, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 154 36 100.0 35 .................................... AATATTGCGAATAGTCGCTGGAGTAACGCCAATCA 225 36 100.0 35 .................................... CTCATATAGCGCATAATTTCATTTGTGCTTTTCCT 296 36 100.0 36 .................................... GAGTGAATTGAGGCAAAGAAATTCCACCCAATACAG 368 36 100.0 35 .................................... GAAGAAATTAAGCAACGACTTAAGGTTTTGGGTAG 439 36 100.0 34 .................................... GAGAAAACTTCTTCTTGAATTCCCTGAACGTTTT 509 36 100.0 37 .................................... GCGACGGCATCAAAATATGAATCAATGTCAACTAGAC 582 36 100.0 35 .................................... TTCAAAGCCTGATGGTTTAGCGCTCAATTCAAATA 653 36 100.0 36 .................................... AATGTAGGTAAATAATATGCCAATCGGTATCGAATT 725 36 100.0 35 .................................... TTGATTGATTGTTTGTGCTTTTTGGATAGAAGAAG 796 36 100.0 36 .................................... TTTATTGAAACTGTTACTCAATTTAGCAGTCGCCCA 868 36 100.0 33 .................................... AAGAAATGGGGGAGATGGCGAGTCTGCCATCCA 937 36 100.0 33 .................................... TTGGGAAGCGCGAAATATGTGGTGACAATACCT 1006 36 100.0 36 .................................... TAGGGCAGCTTTATTCAAGCTTTCCCTCTGCTTTTC 1078 36 100.0 34 .................................... GGTGTGCGGAAAGGATGGCTCACCCCCCAGTACA 1148 36 100.0 35 .................................... GAAAACGATTTCCGAACCATCGTCGCGGTTTGCAG 1219 36 100.0 33 .................................... CAAAAATGCACAAATATCGCACGTCAAGTTTTC 1288 36 100.0 37 .................................... AGTTATTTCAAAGTCTGGTTCGTCCCTGTCAAGAAAA 1361 36 100.0 35 .................................... AAGCTTAATGACTGTCGCCGATTTTGTGTGGGTAT 1432 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 100.0 35 GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Left flank : TATTTTAAGCATTGTAGGGGCGAATGGCCATTCGCCCTGGTACGGGCGAATGGCCATTCGCCCCTACGGAATGCTTCGCCCCTACAGATGCTTTGTGGTTTACTCGCGGCAGATTTGCGCTATAAGTCAAACTCTAGGTTTCGGTTTGGTGGTG # Right flank : AGGCATCAACCAAAACCCTTAAACCAACTGCTTTGCCTTCCAATTTTACAAGCACCTGCCAAAAAAAGCAATCCTACTGGCCAAATCATCACAAAACTCAACGATTCTGGCAAACGAGTCAACCGGAAATCCCCACAAATCATAGCTTTTCCCCTCTATCACAAAATTGCAAGCATCAAAGGGCAGGAAAAAAATCCTCAAATCCCTGCCCCTTGAGCATTTCCGACTTTAAATCACCAGGTCATCCCTTCACAAACAGCAATGCTTGCATCATCATAAAATCCGAAAACATTCTGGTTGGTCTGGCCAAGCCCCCTCTCGATTATAGGCCGGAATCCCTTGCACGCATTGGTTTGGCAGCCGAACCAGCAGCAAATCATCCTCTGCGGTCAAAATCTTCTCCAACTCCCAGCGCAACTTTTCCCGTTCTCGCTGAGACAGCCAACAACGGAAAATAGAATATTGCATCCGTTCCCCATATCCCTCCATCAGCTTATATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //