Array 1 95777-94895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSUU01000018.1 Escherichia coli strain INSali92 EcAli92_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95776 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 95715 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95654 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95593 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95532 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95471 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95410 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95349 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95288 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95227 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95167 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95106 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95045 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94984 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94923 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122786-121476 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSUU01000018.1 Escherichia coli strain INSali92 EcAli92_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122785 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 122724 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 122663 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 122602 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 122541 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 122480 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 122419 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 122358 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 122297 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 122236 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 122175 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 122114 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 122053 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 121992 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 121931 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 121870 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 121809 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 121748 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 121687 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 121626 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 121565 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 121504 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //