Array 1 30-398 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYE01000074.1 Ligilactobacillus ruminis ATCC 25644 contig00089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 30 36 100.0 30 .................................... ATTGACGAAGAAGGACTGGACAGCTTGATT 96 36 100.0 30 .................................... AAGGCTTCATCGGTAGCGACGGGTGGAATT 162 36 100.0 30 .................................... TTGTCGGCAAGACGCTTTCATCCCTCTTCA 228 36 100.0 30 .................................... ATCTTGCTCCGGCAAGATACATCGAAATGC 294 36 100.0 33 .................................... CTTAGGTGAATCTGGATTACTCCCGTATACACG 363 36 77.8 0 .......T.......T....AG.......C.CA..A | ========== ====== ====== ====== ==================================== ================================= ================== 6 36 96.3 31 GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Left flank : TGCCCTCATAAACAATGCAGCCGATAGACG # Right flank : ATGTGTAAATTAAGAAAGAGCGACCAGTTATCAAATGATAATCGGTCGCTCTTTCTTATGTTCTACCATTATCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATGGCCTGTTTCAACGCATCCGTTTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACGCAGCCCAGTGCGAACCTGTTCGTTGTCGTCTCTGTATCTTTCATCGAAAAAGATATTTGGAATATGATTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCGATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCTCGTTTGCGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTATAGATGTGGATCAGTTCTCCGAGCGAAATGTGTTGC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10438-11200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYE01000073.1 Ligilactobacillus ruminis ATCC 25644 contig00088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10438 36 100.0 30 .................................... ATAGTTGTTCAAAGGGAACAAGGAAGGAGT 10504 36 100.0 30 .................................... AATCATACCATGCGAACCCCAAGCGTTCTC 10570 36 100.0 30 .................................... CCATATCTGATCAGTTGACCGTCCTCGTTA 10636 36 100.0 30 .................................... TGCCGATAATAAATCCGAAAGTATATATTT 10702 36 100.0 30 .................................... TTACACGTTGCGTAAGTGCGTTGATAAGGT 10768 36 100.0 30 .................................... ATGGCGGGCGCTATGATTTTCACTTTTTGC 10834 36 100.0 30 .................................... AAGATGGCAGAACGTCTTAAGATTGCGAGG 10900 36 100.0 30 .................................... GTTCAATCGTGTTCCATAAAAACTGTCTGT 10966 36 100.0 31 .................................... TTCAAGCGTACTTCACCCACCGACAAAGCTT 11033 36 100.0 30 .................................... TCGTAACTGGCTTTTTGAAATCGCTGGTCA 11099 36 100.0 30 .................................... CAATGTCTTTCATTTCATTTGTCCTCGCTT 11165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Left flank : TGGAAATAGATGTGGGCAAAAAATATCTCAATGAGCTTCTAAAAAAATCTGTTGAATTCATGCCTGACGAATTGAGAAAACAAGTTTACGAATTGGAGAGACAAACTGCAACAGCATTACAGGATTCAATATATATGTTTGATCTGCCGCTTATCGTATCAATGGATAATGATCTCAAAAAAACATTAAAGAATTATCATTTTTCTGTAGATTCCAGTATAGCATATGATCCGTGTGCTATAATTGAAACTGACATAAAGATTCATGCTGAATGCGCATTAAAAAAAGCTATCGGCGTTAGCGGGTTAGCTACCTATCTAACACCCGAAGAATTCAGTTATATCAAAGATGTAGTGAAGGAAATGGATGTCCCTTTACTGATGATTGATTACAATGTTTCCGGTTGGAAAAGCTATTTTGATAATTGCAACGTGATGTATATTGACGAGGACTTCATTGACTGGCATTAACTAAAATTAACTGTTGATTAAAAAGAGACG # Right flank : CTGTGAACTTCTAATCTGACGCAATAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 13495-13231 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYE01000075.1 Ligilactobacillus ruminis ATCC 25644 contig00090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 13494 36 100.0 42 .................................... TAACCTGTGTAAGTTTCAGCATCTTAATCCGTTCCTGAACGA 13416 36 100.0 42 .................................... ATAAACAATAAAATGTTGTGCAATAATTTTGCATTTGATGAT 13338 36 100.0 36 .................................... AAGAAGTAGTAGACCTTGAAAAATTGGTCAATGAAA 13266 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 100.0 40 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Left flank : CAACATTTAAAGGCGTTCCAATGATTAGTCCCGTTACCAATATCAGAACTAACTGTAATACCATCGGTATCAAAACAATATTCACGTTTTCCCGAAGTCAGTTTATTATCCATTTTAGAATGAACAATAGTTATTACTTTTTTCTGAAATGTGTTAGCTCCGTTTATGATAATCCAGATAAAGAAAACTGAAAATAATAATCCAATAATACCATAGCCAATACGACTATTCATAAAGCAGAGAATCGTATATATTAACATTATGACAGCCATCACAGACGATAACCCTGTTGCAAATTTACGTTTCTTTACATTTTTATCACTGGCTAAAACGATTTCTTTTAAAATATCTTGTTCTTGCTGTCCGATTTCAATACTGTATCTAACCATAATAAGAATCTCCTTTAAACATTTTAATGATATTAGTATATTACCACAAGTTTGTGTTCAAAATGTGGGATTCTTCATGTTACGCTCCAATAATCTTATTGAATAACTGTA # Right flank : CCCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTGAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGCACCAATACATCGAACATCTATATTTTATTCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTTCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTGAGACATGAAGACCTGATGTTTTAAAAATACAGTTCTGCGAATCTCCTGCTCAATTAGGGCGCCAAGGCGGGATTACGAGCAAATTGCCGGTTTCTTAAGATTTGATCGTAAATTCCAGTCTTCGACGAAGAATTATCCCGGATACACAAAGTCCCGGATGAATTTTGCAGTTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 15041-14854 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYE01000075.1 Ligilactobacillus ruminis ATCC 25644 contig00090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15040 36 100.0 40 .................................... ACATGACGGTAGCTGAACTAGCTGACCAATACGAAGTCAG 14964 36 100.0 39 .................................... ACCATACTCATATTATAACATATTCTAGATTTTAACTCA 14889 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 40 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Left flank : TCTCCTTTGTAATTATTTTCTAATTCCCATAATGAATGCGGCGTAGCCCCAATCCCATATGAGCTTTGCAAAGCTGTTTTCAAGATATTCGCGTATGTCATCATCATATCCTGTCATGCGTGAGATGATGACAATATGCTCTCTGATGGTTTCATATGTCAACGAACTATTGGCATTGTGACTGTACCACAAGAAAAGACTTTGACGTATAGCCGTGTATTCAATCATAATCCACTGCATTTTGATAATCATGTGTTCAATAATCTTTTTAGTGGATGCTGCTTCAGGCGATATCAGGTCGGAAAACAGCTCGTTTGCCAGATAATTGCGAAAAACAATGTCATAATCTGTGAGCATTGAGCAAAATTGCTTCTGCGATGTTTGCAAGGTGCGGCTTATGGAATTATTGTCTGACTGTGAATAAATATTCGAGTATTTACAAGCCTCGGTCAGTACAGGCTGAAGAAAGGCTGTGTATAAACTCTCTTTACGATAATTTA # Right flank : TCAATGCGTCCGGCGGTAAACCAATGGATTGTTTTAATGCTTCTATGTTGCAGGGAAGTGTAAACCACGCACAGCCTGTATCTTTTTCCTGTTCATCAAGATTGATAACAAATACTTTCATTTCTGCCATAAGCAATACCACCTGTCAAAGTTTGAACATACCGTTGTTGCAGAGAGCATAACGTCCTTTTTCTTCCAGTTCATGGGCGTAGGCTTCCAGATTAAAATATTTCTTTCCTTTTTCGGAAAGAGCAGAAAATTCAATGTTATGCTCTAAGCGGTAACGAGCAACGTCCATGATGTTGTGACACTCTGGATAAAACAGAAATTCTTCGGATTTCTGCAATAAATCCTCTACACCGCCACAATAGGGAATCAACTCTTTATAAGCCTGCTGAACCTCTGGCGATAAATCCGTGTAAGCAAAGTACAGCTTATTTAAGCGTCTGACAGAAGTTGTCCTTACAATGTCACCAGCAAAGGGAAGCTTCATATCTGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //