Array 1 1032420-1033227 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916765.1 Castellaniella defragrans 65Phen chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1032420 28 100.0 32 ............................ TCGATGTACGCCATGAAGCCATCAAATGAATC 1032480 28 100.0 32 ............................ TGCTGGCCCTGGCGTCCGACCGCATCGCGGCC 1032540 28 100.0 32 ............................ TGCCCAATCATGCTGCCCCTGCGCATCGATGC 1032600 28 100.0 32 ............................ AGAGCCGGTATGTTCCGCCTGTTGGCCTGATC 1032660 28 100.0 32 ............................ GTGGGGTCGGGCCTGTGCGCCTACAGGCTGGC 1032720 28 100.0 32 ............................ AATCCGCCGTCCGCCACCTGCGCCTGACGGTG 1032780 28 100.0 32 ............................ TGGCTGACTACGACATATTCCAGTTCGAGAAC 1032840 28 100.0 32 ............................ ACTGAACGACAGGCGCTGAAGGTGCCCGTTTA 1032900 28 100.0 32 ............................ CGGCGTATGCGCGTCCATGTCATCCAGATATC 1032960 28 100.0 32 ............................ GAACTGAGCGCAGCTTGCCGGTCCTGGGAACA 1033020 28 100.0 32 ............................ TATGAGGCGGTCTTGAATGCGCTGGACAACCT 1033080 28 100.0 32 ............................ TGGCACCTGGACGACTCCATCCGCCCCATCCG 1033140 28 100.0 32 ............................ AAGCTGCGCGGCGTGAACGGCGATGAGATCAG 1033200 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Left flank : ACCAGCACCCCATGCAGCGCCCACGCATCGGCGCGGGTCGCCCCCGTCTCCAGGCGGCTGAGCGTGGGTGAACTGGCCAGGGCACGATCTCGCCCAACAGCCGTTTGCATCAGCAGATCCCCGCGCAGCGTATCGTGGTCGTTCAGGTCTTCGTAGCCGCAGCACAGGCCGTACAGGCGCTGGGCCAGCAGATCGCGCAGGCGGTGATGAATGCGGCCAGCGGCCCGGCGCTCGGTCAAGGCCTTGGCCGCCATGCGCGACAGGCCCGTGCGCGCATCAATTCTTCGCAGCAGCATCAGCCCGCCGTCGGAGCTGAGATCGCCGCCTTGGAAATTGGCCTGTAAATGGCGCCGTCCAAGGCGTCCAAAGTCCAGTTCTTCAGTGGTACGATTTGGCATAGGCGGTTCTTTTTGGTTGTATGGCGTGAGACCCAATAACCATAAGCCCTCGGGCAGGAATCGCCTATTCCTTTTTACCCGCCTGACGAAATTTCCGGGTTA # Right flank : ACACAGGGTCAGCTCGTCAAAGCCGATGTAATTCATCGGCCCTGAATTATAAATAACTCATTGATTTTATTGTAAAATAAAGCCACTCCAGACTATCAAATCCCCCAAAAACAGCCCGCTGGGGCTCATTTTCTGGGAGATTGCCCCGAAACCGCATGAGTCAGATTGACGATTTTTTCCGCAGCCGCCTGGACCAGATGATTGATCTGCGTAAACCCCTGGCGGTGCTTGCCACGCATATTCCTTGGCAGGAACTGGAGGCGGCTGTCGCACACCGTTTTGCGCGTCAGGTGCGCACCGGCCGGCAGGTTGAGGATATTGATCTGTTTGGCCCGACGATGGCCGTGGTAGGGGCCGGCCATTCAAACGCGGGGCGTCCCCGGCTGCCGATGCGGCTGATGATTTCGCTGCTGTATCTGAAGCACACCTTCAACGAGAGCGATGAAGGCGTCTGCGAACGCTGGAGCGATGCACCCACCTGGCAGTATTTTTCGGGGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1034962-1038478 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916765.1 Castellaniella defragrans 65Phen chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 1034962 28 96.4 32 .................T.......... TCGATCGCGTGCGCGGGCTGGGGCTGGATGCT 1035022 28 100.0 32 ............................ AATGCCCCTGTCGCCCAGGACCCCAGCGTTGC 1035082 28 100.0 32 ............................ TGTTCGAAGATGAGCTGGTCGAACTCCAGCGC 1035142 28 100.0 32 ............................ AGGGTGCGCGAGGCGCTGGAAGAGGCCATCAA 1035202 28 100.0 32 ............................ ACCAGTACCGCCGGCACCAATGACCACTGTCA 1035262 28 100.0 32 ............................ CGAAACGTATGCGCCAGATGCGGGCGCGGGCG 1035322 28 100.0 32 ............................ ATGTCGAGGGTGATGGCGTATTCCTTGGATGG 1035382 28 100.0 32 ............................ TTCGCCATTGCGCTGGCCTCGCGCTTGCTGCC 1035442 28 100.0 32 ............................ GATGCGTCGGCCTCCAGTTGATCGATGCGGGC 1035502 28 100.0 32 ............................ TGGACGCTGAACATGCGCCAGCACCGGCGCCA 1035562 28 100.0 32 ............................ TGCTGCAACTGTTGGCACCTGAATCCCATCGC 1035622 28 100.0 32 ............................ AAACACGAACACATGACGCTGATCGGCCGCAC 1035682 28 100.0 32 ............................ ACCGAAATCCGCGCCGTGACGCGCCAAGACAT 1035742 28 100.0 32 ............................ ATACGGTCAAGCATGAGGGCAACCAGCGGATC 1035802 28 100.0 32 ............................ GATGGCTGCCCGGTGCATGTAGTGCAATTCAT 1035862 28 100.0 32 ............................ ACTCGACGCCATCGGTTGTTTCGCGCAGATGG 1035922 28 100.0 33 ............................ TTGCATGCCGCCGCGATGTCTTCGTCGCTCGGC 1035983 28 100.0 32 ............................ TGTGCCCGTGCCGCTGGCCGCGCGCGTCCGAA 1036043 28 100.0 32 ............................ TGATGCGCTGGCGTATGCCGCGATTGCGGCGA 1036103 28 100.0 32 ............................ AAGGCCGCTGCGGATAACTCCGCGCCCGGCAA 1036163 28 100.0 32 ............................ TGTCCAAGTGCCCGCCGCACGCCGAGGACATC 1036223 28 100.0 32 ............................ TGCAGCCTTGGCCGGAAGGGATCGGGAGGGTG 1036283 28 100.0 32 ............................ TGGTCTCATGCTGTCCTCCAGGCATGAATTCC 1036343 28 100.0 32 ............................ TGCCACTCCGGCGGAATTGCTACCCAAGCCGC 1036403 28 100.0 32 ............................ TGGATCGTCAGCGATATCGGCGCGGTCGAGCC 1036463 28 100.0 32 ............................ CCCAACGCCCGTGCGATCCTGCCGGCAGTGTC 1036523 28 100.0 32 ............................ TGTCCAAGTGCCCGCCGCACGCCGAGGACATC 1036583 28 100.0 32 ............................ TGCAGCCTTGGCCGGAAGGGATCGGGAGGGTG 1036643 28 100.0 32 ............................ ATCTGTGCGGTCTGCATCGACACCTTCTCTTC 1036703 28 100.0 34 ............................ TTTGGAGGGCAGCCCTGGGAAATCCCGAGCTGAT 1036765 28 100.0 32 ............................ TGGTACACGTCGCAAAAATCACCGGCGACGGT 1036825 28 100.0 32 ............................ TGGATCGCATCAGCCGAGAAATGGGCGGTGAC 1036885 28 100.0 32 ............................ GATTGGCCCGGACAATAAGCCGCTGCCAGCGG 1036945 28 100.0 32 ............................ GATTGGCCCGGACAATAAGCCGCTGCCAGCGG 1037005 28 100.0 32 ............................ ACTTTCCTCGAGAGGCCGCGTTCGACGACGAA 1037065 28 100.0 32 ............................ ATCCCCGCCGATGCCGAGATCCTGCTGTCTGT 1037125 28 100.0 32 ............................ TCGACCAGCGGCCTGGCGGTGCCGGCGATGCC 1037185 28 100.0 32 ............................ TTCCCGACATGGGCGCAGGCCCAGGTGCGTCC 1037245 28 100.0 32 ............................ CACGGCGGGCACCTGGTCCTGGGGCGCGTCTT 1037305 28 100.0 32 ............................ TTCGATGCGCAAACTAACAATCGCAATTGCGG 1037365 28 100.0 32 ............................ TTCATGCCGCAGGTGTCCCATTCGAGAGCAAA 1037425 28 100.0 32 ............................ GCCATGGCATTCTCGCCAGCGGCCCAGGCAAT 1037485 28 100.0 32 ............................ TCGCGCAGCTGGCGCACTTCCACGATCAGCTC 1037545 28 100.0 32 ............................ TTACTGACACGAGCTTTGGGGTCCAGCGACTT 1037605 28 100.0 32 ............................ GTTTCTGAATGCCGCAGCGGGGGCGCTGGGGC 1037665 28 100.0 32 ............................ TCCTGACCCACCGCTGCCGCCGATTGCCTCAA 1037725 28 100.0 32 ............................ AAATGTTGACCTACCCCATCACCCTCACACGG 1037785 28 100.0 32 ............................ CAGGCGCGACGGCATCTGTTGCAGTCTCGCCA 1037845 28 100.0 32 ............................ ATCACCGTCCGCCTGTCTGTCGCATGGTGGGC 1037905 28 100.0 32 ............................ TGAGCCGGTGGCGACGGTGGTCGATCACACGG 1037965 28 100.0 32 ............................ AGTTCGCATTTCGTGATGCTCAATGCCTGCAA 1038025 28 96.4 32 ....................T....... TAATGGCGTCATCTTATGAGCGCGAACGCGCC 1038085 28 100.0 32 ............................ TTCGACACAATGCACTCCTTTTCTTGAATTTA 1038145 28 100.0 32 ............................ TGGTGGCGGCCGCAGGCGTGCTCGAACAGATC 1038205 28 96.4 33 ....................T....... CAGACGCCCATCTGCTGAAACCCCTTGGGCGTG 1038266 28 89.3 157 .....................C...G.G CCTGGCCCGAAGCGGAACCCCTGCTGCCATCAGCTCATCGCCCGCATAAGCAATCACAGAACAGCGGGAACACCCTCCTCCTTGGCTGGACGCCCGCCCATCGTGGTCCCAGGCCTCCCAAGAAAAACCTGGACGATGACGGTAATATCTCGCAGAA 1038451 28 92.9 0 .CA......................... | ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 57 28 99.5 34 GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Left flank : CCGCAGACCGTCTACACGGATCTGGGCTATCGAGGCGTTGATGCCGAGATCCCGGAATATAGCCTTAAACACCGAGGCAAATTCAAACGTCTCACCGACCAGGAGCGCCGAATGCTTAAACGGCGCCAGGCGGTGGAGCCGGTCATTGGGCATCTGAAAAGCGATCATGGAATGAATCGCTGTCATTTGAAAGGCCAAACGGGTGATGCGATCCATGCGGTGTTGTGCGCGGCAGGCTTCAATATCAAGTGGCTGCTGCGCATGATTGCCCGCAAGGGCATCGGCCCTTTATTTTTGTGCCGATTTATTGCGTGGATTGGTCGTCAGATTCAACGCCTGATGCCCATGATGGGCTCAAGAGGCGATTGGGTTGATCCGGTGGGCTGCCTGCCCTATCGAAATCCGTGGCCTCGGATCGCCGGAAATTCGGCCTGAAACAGGACAAATGAATTTTTCAGGGACGACAAATTACATGCCGGGATCAGCTCCGGCCACCATCA # Right flank : ACATGGAGATCCACCCAATGCACATCGGCATGGTAGGTTTGGGACGCATGGGCGCCGGGATGGCGCGGCGGCTCATGGACAAGGGGCTGAGTTGCGTCGTCTACGACCCCCAGGAAGACGCCGTCGCCCGGCTGGTGGCGGACGGCGCCGTCGGGGCGGCCTCGCTGGCCGAACTGGTCGAACGGCTGCCGCGACCCCGGGCGGTGTGGCTGATGGTGCCGGCGAGCCTGGTGGACGGGGTGCTGGACCAGCTGGCGCCGCAGCTCGATGCGGACGACGTCGTGATCGACGGCGGCAATTCCTGCTATCACGACGACATCCGGCGGGCGAAGGCGCTGGCGGACCGGGGTGTTCATTATCTGGACGTCGGCACCAGCGGCGGCGTGCATGGCCAGGCCCGGGGCTATTGCCTGATGATCGGCGGCGACGCCGCCGCGGTCGGGCGGCTGGATCCGGTGTTCGCGGCGCTGGCGCCGGGCCGGGACGCCGCCCCGCCCACG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //