Array 1 110828-109851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYP010000007.1 Bifidobacterium adolescentis strain MSK.7.17 NODE_7_length_110827_cov_413.069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 110827 33 100.0 37 ................................. AACAGACGACACTTGGGATAACATGACACCAGTAAAC 110757 33 100.0 33 ................................. GCGTTCGTGGGGAACCGCGTGTAGTTTCCTTCC 110691 33 97.0 34 ................................G GTTAACGTATACTACGAAGGAAAAGCTTCCGCAC 110624 33 100.0 34 ................................. TCTGTGTCGCGTGATTTTCAGCCGACTGTCAGTA 110557 33 100.0 36 ................................. ATGGCGCACCCTCACGACCAATAGAAAAACCTTCGG 110488 33 100.0 34 ................................. CTGACGACGTGCGGCAGACGGTCCGCGTTCACGG 110421 33 97.0 33 ........T........................ GTTATCGGACATGGAAACCTCCATCGGATTATC 110355 33 100.0 35 ................................. CAACCGGTCGGCATCGAGTACAAGGTCGAGGGCGC 110287 33 100.0 35 ................................. GACTGGGAGGGCCGGTGGCTGCGGCTGAACAAGGA 110219 33 100.0 34 ................................. GCGGATGACGCCAACAATATCCAGCCGGACGTGA 110152 33 100.0 33 ................................. TCGTACACCGTCTTCGTTGACTGCGCCGCCAAT 110086 33 100.0 35 ................................. ATCGGGAATGCGTTTCAACGCCGCGGAAAGCTGGG 110018 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 109950 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 109883 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 99.4 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : | # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCTTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTTGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTTCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4352-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYP010000009.1 Bifidobacterium adolescentis strain MSK.7.17 NODE_9_length_79357_cov_416.456, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 4351 33 100.0 33 ................................. TCCGCATCCCTTTCCTCCACGGCATCGGCGAGC 4285 33 100.0 36 ................................. CAGTTTGATGCATCGTTGAACGGAAGTTCGACGCGG 4216 33 100.0 35 ................................. CTTGTCTTATTCGGTTTCCAGGGCGTTCAACGTGA 4148 33 100.0 35 ................................. TACATCCTCGTCCGCGGCGCCACGCTCGCCTACAG 4080 33 100.0 34 ................................. AGTGTACATATCCAGCTGGATATAATCAAACCAA 4013 33 100.0 33 ................................. GTCTTCCGGCCTGATGTGCTCGTCTCGTGGAAG 3947 33 100.0 35 ................................. GGATGCACATGCCAGTTTGTAATCGGCATCATCGG 3879 33 100.0 34 ................................. GTTTTCGGCTTTGATGTCGAAAACGCCATCCTTG 3812 33 100.0 34 ................................. CAGTTGAAGCTTTACAACGCCGACCAGCCTTGCC 3745 33 100.0 34 ................................. TGAGTGTCCGTCAGATTATCGGTCAGACCCTCGA 3678 33 100.0 34 ................................. CTGTCACTTGGCTGATGCGTTCCAGATCTCCGAT 3611 33 100.0 34 ................................. TCAAGACGTTGCTCGACGAAAACAAGGCGCGTGG 3544 33 100.0 34 ................................. TCTCTTTACGTCGAACGGGGGATGCAGCCGATTC 3477 33 100.0 36 ................................. AACGCCGTCTGATTGTCGGCCAAATCCTTTTGAAGT 3408 33 100.0 33 ................................. TTCGATGGGGGAGTACCCCAAGTGGACGTGACC 3342 33 100.0 36 ................................. AAGTACGGCGGGCCCTTGCCTGCGCTCCGCCAGTTG 3273 33 100.0 38 ................................. TGTGAGAGGGTGCGTCCGGTCTTCAACCGGCGCAGCGC 3202 33 100.0 34 ................................. AATGTAAAGGAGACTAAATAATGGCTGGAGAAAC 3135 33 100.0 33 ................................. TAAGTCTTCGGCGGAGTGATCCGCCACAGGGCT 3069 33 100.0 34 ................................. AAGACCAGTTGGAAGTGCCGGTACGGACTTGGCA 3002 33 100.0 33 ................................. ACCTTGATGGCGTAGCCGTTCGTGCCATCCCTG 2936 33 100.0 35 ................................. CAACAGCGAGAAAAAATCATCGAAGACCTCATCGC 2868 33 100.0 33 ................................. GACGAGAAGGCCGGCGACCGCTACGAGCTGGTC 2802 33 100.0 34 ................................. ATGGCGAAGCGGTCGTATAGGAATTTGCGGTCAC 2735 33 100.0 35 ................................. AGGCATTCGAGGATTTGCGCCGTCTGTGCCGCATC 2667 33 100.0 35 ................................. CATGAGACTGCGCAGGAGGTTTTCAGCGCGGATGG 2599 33 100.0 35 ................................. TGATTCTGAAACTTCGGCGGATTGAATGTAATCCG 2531 33 100.0 35 ................................. ATGTCCGCAAACTGCATGGTTTGTTGGTTGCTCAA 2463 33 100.0 32 ................................. TGGACTGGCGAAGGCTCCAACGAGTCCGTGAC 2398 33 100.0 35 ................................. GGACAGGGGCCGTTCTCGGCGGGTCCGAGCACCCT 2330 33 100.0 35 ................................. ACTGCTTGCGGACTTTTACACCTACTGGCAGGGAA 2262 33 100.0 33 ................................. GCCTTTACCGGCGTGCGTGCTTTGAAAGCGTCG 2196 33 100.0 36 ................................. TGGAACATCCAATTCGACAAAGTGGAAGCATCGGAG 2127 33 100.0 33 ................................. GACTTGGCCTTGGAATCGTCAACGTCAAGCTTC 2061 33 100.0 33 ................................. ACGAGCGGCAACGGCCTGACGTTCTACGGCGAC 1995 33 100.0 34 ................................. CGAATCAAGGAAACCGCCATCACCCATTCGGACG 1928 33 100.0 34 ................................. ACGTCAATCATCACAACACCTCGATTTCGTCATT 1861 33 100.0 35 ................................. ATCATCGACGACCAGATGGCCGACGACAGGCGCAT 1793 33 100.0 34 ................................. CTCAATATCTGCAATGGCTGCTACGTGCGAATCA 1726 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 1659 33 100.0 33 ................................. TTGATCGGCACCTGATTGTCACCGGGCTTGCGG 1593 33 100.0 34 ................................. AAAACGGCGAAAATCGAATACTCGCAATTCTCCG 1526 33 100.0 34 ................................. GCTTTGTTCGTCACGGGTTTCGCGGTGCCGGTGA 1459 33 100.0 34 ................................. CTGTTCCTGTCCATCCTGAATTTCGTGGCGGGAA 1392 33 100.0 33 ................................. ACGTCGTAGGCGCTCACGGTGGCGGTGTCGTTC 1326 33 100.0 35 ................................. CATGTCTTTCCCTCCATGCTTTGCCTTAGAATGGT 1258 33 100.0 33 ................................. CTCGGTCAACGGCGTTTCGGGCGTGCGCACAAG 1192 33 100.0 34 ................................. TACTTGCCGGGCGGACTTTGCTCGGCTATTGCAG 1125 33 100.0 33 ................................. GTATTTAAGGAGACATTTTGACTCAGCAGATTC 1059 33 100.0 33 ................................. ATCGGCTATCGACCATAAGTCATCGTCGTACAT 993 33 100.0 35 ................................. ATGCTGCCGCCTCCTGTTCGAACAATTGTTCGGCC 925 33 100.0 33 ................................. GTCCTGACGTTGAACGACTCGCGTGCGGAACTC 859 33 100.0 34 ................................. GCTCAGAACGGCACCATCGGCGCCGAGGCCGGAG 792 33 100.0 33 ................................. TCCATAGCTAGTAGAGGACCTCAAACTCTGCCG 726 33 100.0 35 ................................. TTCTGCGCGCGCTCCAGACGGGCATAGTCACGCAG 658 33 100.0 34 ................................. ATAGCCCTTGGAATCCAACGAACGGAACTCTCTC 591 33 100.0 32 ................................. AATCAGTGAAGCTTTGAAACCCTGCGAATCAT 526 33 100.0 34 ................................. GTTGACGAATGGGGGGACTTGAAGCAGAAGGCGA 459 33 100.0 34 ................................. ATCGACGAGAACGGGAAATTGGACAATGTGTCGG 392 33 100.0 35 ................................. AGCATGGCCGCCAGGTCCGCGCCGAATTCGGCGGC 324 33 100.0 34 ................................. GCGAGCTGGGCGGTGAACAAGAACGCCTCCGAAA 257 33 100.0 34 ................................. CAGTTGACACACTCAGTGCAACGAACGTCTACAG 190 33 100.0 35 ................................. AACGCGTTGGCGGGCGACTGATGATATGCCGTCAC 122 33 100.0 34 ................................. GCCACGAGATCGAACGGCGCGAAGCGGGTGCCGT 55 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 65 33 100.0 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : CCAATATTGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGCGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATAGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGCGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACA # Right flank : TAACAGACGACACTTGGGATAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //