Array 1 16297-22915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPX01000062.1 Methanosarcina mazei strain 3.H.M.2.7 scaffold26_1_size36373-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16297 37 97.3 37 ..................C.................. CCGTTGCAACCCGTGGGCATGATGAAATTATAAAAAC 16371 37 97.3 35 ..................C.................. TGTGAGTTTGAATCGCTTGATTCTTTCAGAAAGGT 16443 37 97.3 34 ..................C.................. ATATTTTCAGAACGTTGAAACCAAAACGCATTAT 16514 37 97.3 35 ..................C.................. TAAAAAATAAATCAATAAGAGAATAACGTTTTTCA 16586 37 97.3 35 ..................C.................. ATTGATAGGGGAGAGATGCGGTATAAGCTCCCGGT 16658 37 97.3 35 ..................C.................. CAAAGAACCCCGCAACAGGCGAAAAGAAGAAAAGC 16730 37 97.3 35 ..................C.................. TTTTTAACCTGCTCTTCCCAATTACCGGCTAAGAA 16802 37 97.3 36 ..................C.................. ACCGCATTGTCACCGGATCCCTTTTGCCCTGCATTA 16875 37 97.3 32 ..................C.................. TGGGAGCTTAGAGGGAGTGCACGTATAGAGAG 16944 37 97.3 34 ..................C.................. CTGATAGGGTCAACCTTTAGCACTCCGATGAGAT 17015 37 97.3 33 ..................C.................. TGTTCAATGATCTCTACTTTTGCCGGGAAAGAT 17085 37 97.3 35 ..................C.................. CGGAATTCTCGCTAAATTGAAATCAGGCGAAATAG 17157 37 97.3 35 ..................C.................. TATGTTTCAAAGAGAGCTTTAACAGCGTCACTGTT 17229 37 97.3 36 ..................C.................. GTTATTTTTATATCAAGTTCGTTCATCGTGTTTTCA 17302 37 97.3 35 ..................C.................. CAGTGTGGCCGTTGAATGTGATTGTTTCATTGTCG 17374 37 97.3 33 ..................C.................. GCAGACCCAAAACGTATTGAATTCGTCTTCTGT 17444 37 97.3 35 ..................C.................. CCACCTTGTAGGTAATAATCTTTCTAATTACTACT 17516 37 97.3 35 ..................C.................. TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 17588 37 94.6 34 .....A............C.................. TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 17659 37 94.6 36 .....A............C.................. AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 17732 37 94.6 35 .....A............C.................. TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 17804 37 94.6 35 .....A............C.................. AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 17876 37 94.6 35 .....A............C.................. TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 17948 37 94.6 34 .....A............C.................. TTTATAATGTACCAGATCCATTCTGGCTGAATTA 18019 37 94.6 37 .....A............C.................. TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 18093 37 94.6 35 .....A............C.................. CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 18165 37 94.6 38 .....A............C.................. TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 18240 37 94.6 37 .....A............C.................. TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 18314 37 94.6 33 .....A............C.................. AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 18384 37 94.6 35 .....A............C.................. AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 18456 37 94.6 35 .....A............C.................. AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 18528 37 94.6 35 .....A............C.................. TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 18600 37 94.6 34 .....A............C.................. TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 18671 37 94.6 36 .....A............C.................. ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 18744 37 94.6 36 .....A............C.................. CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 18817 37 94.6 35 .....A............C.................. CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 18889 37 94.6 35 .....A............C.................. CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 18961 37 94.6 34 .....A............C.................. AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 19032 37 94.6 35 .....A............C.................. TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 19104 37 94.6 32 .....A............C.................. TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 19173 37 94.6 34 .....A............C.................. TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 19244 37 94.6 35 .....A............C.................. CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 19316 37 94.6 35 .....A............C.................. TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 19388 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 19461 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 19534 37 100.0 35 ..................................... AGCCTCTGTTTGTTGTACTGAGTAGGAATGCATAT 19606 37 100.0 35 ..................................... TATACTCCCCTGCTCTTTGCTTTCCTCTTCTTTTT 19678 37 100.0 36 ..................................... TTTTTGTATAAATCAGTTTAATAATAATGTTCTTCA 19751 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 19823 37 100.0 34 ..................................... TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 19894 37 100.0 37 ..................................... TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 19968 37 100.0 37 ..................................... CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 20042 37 100.0 35 ..................................... CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 20114 37 100.0 34 ..................................... ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 20185 37 100.0 34 ..................................... TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 20256 37 100.0 37 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 20330 37 100.0 36 ..................................... ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 20403 37 100.0 36 ..................................... AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 20476 37 100.0 36 ..................................... TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 20549 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 20621 37 100.0 34 ..................................... TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 20692 37 100.0 35 ..................................... CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 20764 37 100.0 35 ..................................... TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 20836 37 100.0 35 ..................................... TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 20908 37 100.0 36 ..................................... AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 20981 37 100.0 33 ..................................... TATTAAACGCTCAAGAAACAAGTAATGATATTT 21051 37 100.0 35 ..................................... TTTTAGGTTATTATCACGCTGCTTTAACATTCTCA 21123 37 100.0 36 ..................................... TTGCGATTTGGGATGTAGCTGACGACAGGGTTGATT 21196 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 21268 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 21342 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 21415 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 21489 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 21563 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 21635 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 21710 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 21782 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 21853 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 21925 37 100.0 38 ..................................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 22000 37 100.0 37 ..................................... TTTTATATATTAATGGAATAAATGAGTCGAGTGGTAC 22074 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 22145 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 22219 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 22294 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 22370 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 22441 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 22516 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 22587 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 22660 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 22732 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 22804 37 75.7 37 TG...A...GT..T....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC C [22815] 22879 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 92 37 97.3 35 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 13697-7338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPX01000165.1 Methanosarcina mazei strain 3.H.M.2.7 scaffold7_1_size56237-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13696 37 100.0 34 ..................................... GGATGCCCTGCAAATATCCGGTGACCGGGATTCC 13625 37 100.0 36 ..................................... CGTCTTTCATTCAGGAGTTCCGTTAGATTCGTGTTT 13552 37 100.0 36 ..................................... CACAGTTGCAAAGTAATGCAACTTGTGCGGGAATTG 13479 37 100.0 37 ..................................... ATTGACAGAGCAACCGATTCAATCAATGGAGAGCCGT 13405 37 100.0 35 ..................................... ATCGGCTCTGGATACTCAGACCAGCAGAAAAACTG 13333 37 100.0 34 ..................................... AGAAGAATGAAATCCACAAGTTCGACCCTAAAAA 13262 37 100.0 36 ..................................... ACAGCAATGCACGCCGCAAAACAGAAATTAATTTAA 13189 37 100.0 35 ..................................... TTCCCTTGTATAGCTCACGCGGGAACCGTAGAAAC 13117 37 100.0 37 ..................................... TAAACACCGTAAATAATTTGCTCCGGTGCGTATACTT 13043 37 100.0 36 ..................................... TTGATCCTTGCCCCTGCTGTGCTCCCTTTCATGCTT 12970 37 100.0 36 ..................................... TTATTCCCTTCTTATTTAGAATGTTAAAGAGTCATG 12897 37 100.0 37 ..................................... ATATATAGACTCGATTTTGTCGGGTATTCGTTTGCAA 12823 37 100.0 35 ..................................... AGTCGCATTTAGTAACTTCTCGGTTTTTTTCACAT 12751 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 12675 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 12603 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12531 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 12458 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 12385 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 12311 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 12240 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 12168 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTTATCTTGA 12096 37 100.0 35 ..................................... AACCATTCGATATCCCTATGATACGTCTCTGAATA 12024 37 100.0 35 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGA 11952 37 100.0 34 ..................................... AGGGTTTCAGAGGTCATTTTCACACCTCTACAAA 11881 37 100.0 35 ..................................... TAATGAATGCTCGTAAGGTTCTCAGGAGCAACATA 11809 37 100.0 35 ..................................... TAATAACACAATTCGGAGCAGTGGTATAGGCGGCA 11737 37 100.0 37 ..................................... TTAACTGCTTTTGAATCAATCGCGGAATCGCTTAAGA 11663 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 11592 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 11520 37 100.0 35 ..................................... AAAAGAGTCTGACACCATAGATTTCCATAAAACGG 11448 37 100.0 36 ..................................... AAAGTTAGGAAGGCAGGGTATCAAGAACTGGTCTAA 11375 37 100.0 35 ..................................... CTCACTGTTCCCACGCTCCTGTTTTGGCGTTATAT 11303 37 100.0 34 ..................................... CTACATCTGTGCCAGCCTCCCCGATTGTGATTGT 11232 37 100.0 38 ..................................... ACTGTACTGTCCTCCCTCCCTTGCCTCTTTTTGTAGGA 11157 37 100.0 36 ..................................... GTAAGTATCATGCTTTCAGGGAACAATTCTACCGCT 11084 37 100.0 35 ..................................... TAAATCAAAAAATCAGAAAACGAGGACAGTATGAA 11012 37 100.0 36 ..................................... TTTGTCATTTTTTGTGACTTCCTTAAACTCAAACTT 10939 37 100.0 37 ..................................... ACAAGGGACTCCCATTCGTCTGAACCCCCATACGTAT 10865 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 10793 37 100.0 35 ..................................... GAAGACTCCGAGCAAGTGCCCCAGATGAAGGACGT 10721 37 100.0 35 ..................................... GGATACCCGTATCTGTTTCATATCCAGGCTCTCCG 10649 37 100.0 35 ..................................... TGCTTTGGTCCCGTACATAGCTATCTTGGCTATTG 10577 37 100.0 35 ..................................... CTTCTAGTATTTTCACCTTGTTTCTCAGCGCATTT 10505 37 100.0 34 ..................................... AAAAACGGGCAGAATAATAATACACTAGCGTATC 10434 37 100.0 37 ..................................... TGCGAGTGGGAACCAGGTGCGGAGAAGTCACCGGATA 10360 37 100.0 36 ..................................... TAAAAAATTAAGAACGTTGTCATTTTTGCGTTGTCT 10287 37 100.0 37 ..................................... GAGGCTGGAGAGCTCGGATATGTCAGCGATACCAATA 10213 37 100.0 36 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACCGC 10140 37 100.0 37 ..................................... TTTTTGATTTTTCTTCCGGCATGAAATCCTTGATCTC 10066 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 9992 37 100.0 37 ..................................... AGAGTCTCCCAATAAGGTCGTCTTTGTGCCAACGAGT 9918 37 100.0 36 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTT 9845 37 100.0 36 ..................................... TTAGGGTATTACAGAGCGTCTATTATATTCTCACTT 9772 37 100.0 35 ..................................... GCTTCAAGGTTATTGCCCGAGTTCGAAGGGTGTAA 9700 37 100.0 35 ..................................... CTGATTTCTTGCGGGACTTTGGGAAGCCGGAAAAA 9628 37 100.0 35 ..................................... TCTCAAACAGACCTATACACCTTCAACCGATCCAA 9556 37 100.0 34 ..................................... TTAACGACCCAAAAAACAAAGCAGGACCAAAAAG 9485 37 100.0 35 ..................................... ACCACCTTAAACAAAAACTATATATAATATGTGTT 9413 37 100.0 34 ..................................... CATTCACCGTAAAAAGATTGCCTGTGCCGGTATC 9342 37 100.0 38 ..................................... AGTATTCATGACGGGCTGCTGAAATCTGATTACACTCT 9267 37 100.0 37 ..................................... ATACTCAAAAATCCAAACATAAAAAGCTCAAGAAAAC 9193 37 100.0 35 ..................................... CAGTTTTGAGTTCAGCTTTTGCAGAATCGAGTTCA 9121 37 100.0 35 ..................................... CTGTCATATTCGATGTCGTGGATAGTCGCTTTCAC 9049 37 100.0 34 ..................................... ACAAATTACCATCTGCTACAATAACTAAACCCAA 8978 37 100.0 35 ..................................... TTGTAGCCTCTAAAGCAGTACCGAGAGGTGCGAAT 8906 37 100.0 34 ..................................... ATATTTGGAATTATAGAAGCAATAACCCTAATAG 8835 37 100.0 41 ..................................... AAAAACAAATGATTAATAAGCTTAATGAGATAGACAGATTA 8757 37 100.0 36 ..................................... TTTAGTGCTATTCTGCCTTCCGTTTGTGTTCATTTG 8684 37 100.0 37 ..................................... CCTTATAGTCTGCAATATCTCTAAATGTTAAAGTCTT 8610 37 100.0 35 ..................................... TCAAACAACATTTCAAAAAAAGAATTTCTCACTAT 8538 37 100.0 34 ..................................... TCCATCCTGTTCTCGAACTGTTCCTCATAGAACG 8467 37 100.0 36 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACTTT 8394 37 100.0 38 ..................................... GGATCTCGGTTGTTTGATTCCCATCTATCACGTAATAA 8319 37 100.0 35 ..................................... TAAAAAGTATTATTTCTTATGATAACGCCTTTTGC 8247 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 8175 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 8104 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 8030 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 7956 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 7883 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 7812 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 7737 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 7665 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 7591 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 7519 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 7448 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 7374 36 75.7 0 .....T.....T..........G.GCCT-.......A | C [7342] ========== ====== ====== ====== ===================================== ========================================= ================== 88 37 99.7 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //