Array 1 131276-130646 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000002.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 131275 36 100.0 30 .................................... GACCATTCTGTTGATTCCGCCCTTGTCAAT 131209 36 100.0 30 .................................... AAAGAATCAAAGTTCGTTAACGAGGAGCGT 131143 36 100.0 30 .................................... CTTGACTCAGATAAACATAGTCCCATGTCA 131077 36 100.0 30 .................................... TTGGGCAAACTAAAAAAAGAGTGGGCAAAA 131011 36 100.0 30 .................................... ATTAGCCAATGCGGTTATCTTCCGTAAGGT 130945 36 100.0 31 .................................... TTAGATAACCAGTTCACAGAGCGCAAAATAT 130878 36 100.0 29 .................................... TATGCAAAGAATCAGCTAAAGCGTCTTCT 130813 36 100.0 30 .................................... ACGAGCGTTTCATAATAAGAACAGGGCTCT 130747 36 100.0 30 .................................... AAAAAATTCTTTCTTATGGTGGACCCACAA 130681 36 83.3 0 ..............................GGGCTA | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTGTTTTGAATGATTCCAAAAC # Left flank : TAATCGGATATGAATTATTAGAGCATGAACTTGATTTAGAAAATGATGAGATAACAGTTTTGGAATTGTTTAAGGCACTTGGAATCAAAATCGAAACACAAAGTGATTCATTCTTTGAAAAAATCATTGAAATTATTCAAGTTTACAAATATTTATCAAAGAAAAAACTTTTGGTTTTAATAAATGTTGGTTCTTATTTAACGACAGAAGAAATGTTAGAAATCATGAATTATATTTCACTAAATCAAGTTAAAACATTAATGATTGAACCAAGACAAGTTCATGGGTGTAAGCAATTTATTTTAGATGAAGATTATTTTTTAAGCTTCCATCAATCACCGAGCATTTAAAAAAGATAATAAAAGATAGCTTTTTCTATAATTTCGGTGTAAATTTAAAGTAAACACGTCCGTTGGTAAATGGTAAAAAGGAATCATCAAAACTCAAGCCCTGCTATAGGCTGAGTAGTGCGATTACGGAACCTTGAAAAAAATTACGAG # Right flank : GGTTGCTTTGTTACAGATAGAAGCTTGAGAGGTATAATGGTAGATAGAATTGAAAAAATCCAGTAAAAATACCATTTAATAAATGGAATTTACTGGATTCTTTCGTTTTTTTTATTCATATTGTTTTACTTCACGGGTAGTAGCTAAATTGTAAAAAGTCATTTGAGTTCCATGTTTTTGTTTAGAAGTTTCCTTTTCAGGGGCTGATACCGTCAGTATTGCTGTTTCAACATGCCCGTTCTTATCGGAGCTTTCTAGCAAAATATGGTTTTCACCGGGTTTTAAACCAGAAATCGTAAACTGGTGACTTTCCGTAAAAGTATGTCCCGTCATTTTTTTGTTTTGGAAGGAATACGATACTTTTACTGCAGAAGTTGTACCAAACATCACAGTTGCTTGATTTTTCGTATTCATAACGACGTATGGTGAATCAAATGTATAGTCATCAATTAAAAACATATCGGAAAGTTCTTCGGACGTTTTTGCCGAGTATGTAATCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 472968-472673 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000001.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 472967 30 100.0 36 .............................. TTGATGAATTTTGTGACATCTATCCTAATGCTTCCA 472901 30 100.0 36 .............................. TTGATTAAAGGTTATTTACGTGGTTCTGAAGGCGAA 472835 30 100.0 35 .............................. GTGGCTGGGCTAAAGATAAATAGATTGCCCATGTG 472770 30 96.7 38 ..C........................... GTTGTTAGACCTGAATAGGCTACATCATCTTGAATGGA 472702 30 80.0 0 ..............CC.A....C....TG. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : TCAAGCGAAGCGGCGCCGATGTTTTCGTGACGGGAGATATTTATTATCATACAGGGCACGACTTACTTGCGATTGATTTACCTACGATTGATGCGGGACATAATATTGAAAAAGTGATGAAACGTTATTTAAAAACGGAATTTGAAAAAAGGGCGGAAAATCTAAAGTATGAGGCTGATTTTATCATTTCAGAAGTCGATACTGATCCGTTCACGTTCTTATGAAAACGAAATTAATTTTTTTAAGCGGCAACTCAGGCAGTGGGAAAGCAACGCTCTTTCAATGTCATTAGAGTAAATTTTTAATTCAATCTGTCGATGTCTAGTAATGTGAAAATGCTGGGATATCGACAGAAATCCGGAATTCATTGCGGGAGAAGGAAAGATGGCGGAAAGAGAGACAATGACTTTCTTTTTCTACTCCATTTTTCTCCAAAAATCCGGGGGTCGACAGAAAATCACTTTTGAGCTATGATGGGAGTAAGAGTCACGAGGGTACCT # Right flank : TTAGCCAAATAAAAAGTTAAAGCACAATTAGAGCATATATTAAAACAAAACAAAAAGCATAAATCCAGTAGTGATTCCATTTCAGAAATGGTTTTTACTGGGTTTATGCTTATTTTTTATCGACCGCCGTTTTTTAAATGTTCTAATCGGGCGCGGCGTTTTTCTTCCATGTTTTTCTTTTTGGCACGCGGTAGAATGGCTTCGGCGCTTATTTGGTGGTGGCGTTCCCAAGTTGTGGGGTCATCTGGTTCGTACTGGTCTAAAAAGACGAGCACTTCCCGGATAATATGTGTTGGCGTGCTGGCACCGGCTGTTACCGCTACTTTTTTGGCGTCCTTAATCCAATCTAAATTAATTTCGCTCACATCGGCCACTCGATATGCGGGGACTAAAGCTTTTTCAATCGAAACTTGGGCGAGACGATTCGTGTTATTGCTCCGCGGGTCGCCTACAACAATTGTGACGTCAGCGCCGACAGCTTGTTCTGCAACGGCTTCTTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 113294-113014 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000003.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 113293 24 100.0 40 ........................ CAGGCGCTAAATTTGTGGCTTTTTCACCAGCTTCCCACCA 113229 24 100.0 41 ........................ CAGGCGCCTTTAGCCAGTTAAACAGTTCGGTCGCGTTTTAA 113164 24 95.8 36 ..........A............. TTACGGTGTATTGTTTTCCTGTCGTTAAACCGGAGC 113104 24 91.7 41 ..........A............A CATGTAGAGCTCCATTTTCTATCTCTTCGTAAGTGTTTTAA AC [113098] 113037 24 91.7 0 ..........A...........A. | ========== ====== ====== ====== ======================== ========================================= ================== 5 24 95.8 40 TCTATGTATTGTGAAATGTAAATG # Left flank : TATATTAATAACAAGCTGGTATATGTTTATAAAAGTTTCGTAAAAGTGACTGGGAAGAAGGATAAAAAAGGACGTATTCCAGTACAAGTGAAGCCGAAAAATCAATTAATCATTCCAATCTGGAATAATACGAAATTACGAGGCGGAAAAATTAAATGGTATCATGTAGGGCAGGGGCTATCTTGGTACGACCACGGAAAAGGTTATTTAGAATTGTGGTATCCTAATGGTGGCTGGTATTATGCAGCACCGTATACACTGAAATAATAATCCTACTCCTACACTATACCGTAAAAGCGGCAAAATTATTATCTGTCGACCAGCGATAGGGTGAAAACTCTGGCAGGTCGACAGATTTTAGATAAACGTTGCAGCGGAGAGGATTAGCATCATTTGGACTCATTTAAAGGTTAAAAAAACTTTAAAAAAATCGAGAAAATCTTGGGGTCGACAGAAAAGTCTTTTTGAGTTAAGATAGGAGTAAGGCTCGCGAGGGCACC # Right flank : TTGGTGTATATTTCTAAGGCTAAGAATAAAAATTCAGTGTAAAGAATGCTTGAATCTTTTTAAAGCCATTTTTAGATTCGAATAAGTGTGTCTAGCTCCTCCTGGTGTTAGGCACACATCTCCTGCCTCGTCTAGTACGATTGCTTTTTTAGTAGAGATAAAGGAATGACTCACTTCCCTTGATTGGCTTTCTTTTTCTTAGGCTGATATTTGTTTAGCTTGGAAGATATCGGGTAAAAAATACTACTCCGCAAAACTTTTTATGAATAAATTTAGTTGACCTCTCTTTTTAGGAGTGGTCTTTTTTTGTTCAAAAAATAGACACATCTATACACCTTCCTAAATGGTATACTAAATGCGAGGAGGGAGATGGAATGAGTCGAATTGATATGGCAGAGGTACGTCATTTTCTCACAACATTAAAACAAACGAATGCGAATGCGCGAACGTGGCTACTGGATGTAAAACAAAGTGTCCAAGTTTATATAGAAGATACACGC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTATGTATTGTGAAATGTAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 166148-167174 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000003.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 166148 36 100.0 30 .................................... TTTCCTCGTCAGTCAACTTCCTGTCGATGT 166214 36 100.0 31 .................................... ATATTTATATCCTGTATAACTAGATTTGGCA 166281 36 100.0 30 .................................... GGTTTGTTTTTATAATGCCTTTAACCATAA 166347 36 100.0 30 .................................... CGTGACGATAGTGTTGTGACCTAATCGACG 166413 36 100.0 30 .................................... AATTCCGTTGATGCTACCCCAACAGATTTC 166479 36 100.0 30 .................................... AAGTTACAACGATGAAGATATTAGCAATTT 166545 36 100.0 30 .................................... GAATTAGGCAGTTCTTGGGACGATGTATAT 166611 36 100.0 30 .................................... AGATATGTTCAAGTGCCGCATTTCGTTCCT 166677 36 100.0 30 .................................... AATTTTTTTTCAGTATCACTCATTGATTTT 166743 36 100.0 30 .................................... TGTCTTATACGATGTAAAATCCATCTTCCG 166809 36 100.0 30 .................................... TGGTTCGGTCGCTTTAGGTACCTATGCGGT 166875 36 100.0 30 .................................... TTCTTCCGCTATCATCAGATGTGATTTTAT 166941 36 100.0 30 .................................... TTACTCGGACGATTTCATTTTGAAAAATTT 167007 36 100.0 30 .................................... AATTGACGGACAAAGGTTTGTATTGGCAAG 167073 36 100.0 30 .................................... TGTAACTTTTGACCTAAAAACACATACGGT 167139 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : ACCTTCTTCAATTACATCATCTAAATAAGAAATCCCTCGGCGTTTAGCTAAGTGCATTAGTGCAGTATAAATTTCTGATACTTCTAGTTCTTCATGTAGCCCCTTCACTCTTAACTCGTAAGGGTTTTCATTCACTTTATTACAAGTACTTATACCATTTTCCATAAGTAAATGTTTAATTCTTTCTCTTCGATGCTTTTTACGTCTAGTTAAGCGTCTAGATTGACGGTTAATTCTCCTATCTTCATTAGCTGAAGCGTCCCGACTACTAAATAATCTTACCCCAGTATCTATTACTTCCCCATTTGTAGCGTCTATAATTCCCCATCCTACTGAAGCAACACCAATATCTAGGCCTAAAACCAATTTTCTCATATGATGATCTCCTCTCACCTTGTGTACTAATCAAATTATACAATTTAGCGAATAGAAAATCCAATATATTCTGTGTTATAATAAAAATAAAGTAGTTTATAGAACCTTAAATTGACGAATTTGAG # Right flank : CTTTTGCCCATGTCTGCATCAGCGCCTAGTTGTTTTAGTACTCTCAAATCAACAAACTTACTAAATAATGGTACATTCCCAAATATCGAATTGGCGATCCTGCTTTACAAGCAAAGAATCTGGAACATAAATAAAAAATAAGCATAAACCCAGTAAAACCCATTTTAAAAGATGGTATTATTACTGGATTTATGCTTTTTTATTTTTCCTTTTATAGAGGGAAAAATCTGATTATGTCCCAAGCTCTTTTGCTTTAAGATTTTTAAAACGGCATTTTAAAATTACCAAATGGATTTTTCCCTTTTTTACCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTGAACTGTTTGAGGAGGCGGTTTATTTCCTGAATTGGACGGCCACTTCCTCTTGCAATTCGTTTTCTGCGACTTGCGTTAATGATATCTGGATTGTCTTTTTCCATTTTTGTCATGGATTTAATGATGGCTTCGATATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 200097-200519 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000003.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 200097 30 100.0 35 .............................. TCCTATACTTCCGTTACTTTTACGTGTACGATGTC 200162 30 100.0 35 .............................. ACGTACTCTTCATCTTTTGTGAAACATGAGAATTC 200227 30 100.0 36 .............................. GACAAAAATGGTAAGTTAGTACTTGGTTATATTTAC 200293 30 100.0 36 .............................. TCTCATGACAGAAGACAAAGAATATCAAGCGGAAAT 200359 30 100.0 35 .............................. AATTCCAGTTTTTCGTTTTTTTGAGTGATGACATT 200424 30 100.0 36 .............................. TTCTTTCGCGGACTGTTCAATTAACCGCGTTGTTTT 200490 30 90.0 0 ...........C.....A.........G.. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 98.6 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : AAACAACGAACTGTGGTTCCACGTCAAGGATTTGCCTGGTTCGCATGTTGTGATCCAAGACCCGAATCCCGATGAAACAGCCATCGAAGAGGCCGCCATGATTGCCGCTTATTTCTCAAAAGCACGTCTATCAAGCACCGTCCCCGTTGACGCAACGCTCGTCAAGCACGTGAAAAAACCAAACGGCGCCAAACCCGGCTACGTCATTTACGATAATCAAACGACCTATTTCGTAACGCCTGACGAAGAAAAAGTCCAAGCATTAAAAAACAAATGACCTATCGCCCCGGTACGATGTATATCGGGGTTTTCTGTCGATGTTCGGTAACGTAAAATTGCTGGGGGAACGACAGAAAGTTGGGAATCATTGGGAGAGTAGGAGAACGAGGAGATAATGGAACAATCAATTCGTTTTTCCATCCCATTTTCCACCCAAAAATCTAGGGTCGACAGAAAACCACTTTTGAGCTATGATGAGAGTAGAGCTCGAGAGGGTACCA # Right flank : TTCTGTTGTGACCTTACTTTCAAACTCATTCGCCGCTGTTTCAATTTATGTACCATAAATCCTAATCCCGTTAAAATCCCCCGCCAAAATAAAAACTCTGGTGGGGGATTTTTTATGTTTGGTTTAAACAAACGACCGGAGCTCCTTGTTTTTTGCGAATTTGTAGCTGGCAATGCTGAAAAATAGGAGGGTGTAGCCGAGTAAAATGATGATGTTTAAACTTAAATCGGCAAGTGTTCCGTTTTGTTGGAGTTTTGAGACGGCGTCCATCACCCAGTATTGCGGCATGAAAGCGGCGATTTTTTGCATGATTTCTGGCATGATAGCAATCGGGATTAGTGCGCCAGAAAGTAGCGTTGAAATCGTGAAAATCGTCGTTTGCATCGCTGAAATACTCCTTCTGCTTCCTGCGACAAAGCCGAATGCGAGTGACAGCACGACCGCCATCAGTGAGAACACCGCAAGGATTGCAAATAAATCAACGTATGCAACACCCGGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 216993-216567 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBO01000003.1 Listeria sp. ILCC792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 216992 30 100.0 37 .............................. TAAATCTTTTTAATATTTTATAACTTGCCATGTTTCA 216925 30 100.0 35 .............................. TGATTTGTTTGTCGGCATAAGCTTGTCCCTGTTGT 216860 30 100.0 37 .............................. GAGGGATTTAGACCAAGCGAACGACGCGCGCGAACAT 216793 30 100.0 38 .............................. ACAAAAGTTGACGGTTGGGGATACGCCGAGAAAGACAC 216725 30 100.0 35 .............................. GCTGTATCTTTGATTTCAAATTGAACTCCAGACAG 216660 30 100.0 34 .............................. CCACATCAGAACGTATCTGGCCCAATTCGGCAGT 216596 30 86.7 0 .............C...G...G...G.... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : TTATCAAGGTTTTAAGATGTGGTGGTGATTTTATGTATATTATCTTAATCTATGATATTCCAAATGGCGAGGGCAGTGCGAAAGTTGCGCGTAAGATTTTTAAAACTTGTAAAAAATATTTAACACACATTCAAAAGTCCGTTTTTGAAGGGGAGGTTACACCAGCACTTCTCATGCAACTAAAGCTTGAACTTAATCAACATATTCGAAAAGAGATGGACTCTGCCATTATTTTTAATAGTCGCAATCAAAAGTGGCTAGAAAAAGAGTTTTTAGGTCTTGAAGATAGTAAGACATCTAATTTTTTCTAATCTGTCGATGCTAGATAGCGTAAAAACACCTGGGGGTCGACAAAAACTTGTTATCCGTTCTGGCAGAATGGATAACAAGTTTTTTTGTTTGTGAAACTAAGGAAAACTTGAAAAATGACTCCCGAAAATCAGAGGTCGACAGAAAAGCCTTTTTGAGGTAAGATGGGAGTAGGGCTCGCGAGGGTACCT # Right flank : ACAGGAGGCGTATTTTTAGGGTGTTCCATACATAAAGTTTTAATCCGTGCATAAAAACTACAGTTTCTGCATTTTTGTGGTATTCTAGTCTACATATTATGAAATATGGCTGCAATTTAGCATTGGGAAACTAGTTTTTTTAACTACAAAACTACACATTCTAAAAAAGCAAAAATCATTAGAAGCGCAGTGCATCTGCGGAAATGATTTTTGCTTTTATATGTGTTTGTATAGTGATTGCATATGCAATTTGTTTGCGGGGATAAAATGGGTAAAACCCGCTGTTTTTGTAATAATCCGCACTAGCTTTCTTCAAAATGAACAAAAAAGGGGATTATTTTTGCGCGATTGTTCAAAAAATGTCTACAGAAAATGGCGGTGAAGTCTGGTAAGATATTACTTGTGATGAGGAAAACACTGTATGCCTCATCATAAGTATTCCTTTAATTACAAAACGAGCTGTTCAACCTTTTGACCTAGCCATCTTATCTTGGCTAGGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //