Array 1 97059-98310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97059 29 100.0 32 ............................. GGGGTTGTCCACAGGTGCGGGGGGCGTTTGAC 97120 29 100.0 32 ............................. GCGACAACCGGCCCGTCGGCCCACGTGCCGGT 97181 29 100.0 32 ............................. ACGGTCGTCATCGTGGGCCTGGCCCTCGGTGT 97242 29 96.6 33 ............................G GAGGTGCGAACAATGGCGGCTAGGAAGACCACG 97304 29 100.0 33 ............................. CGGCATGCTCGCGGACCACCGACCGAGCGCTAG 97366 29 96.6 32 ............................G AGTGCGAGCTGGACGGCTGCGGCCGGCCACGA 97427 29 100.0 32 ............................. ACGCGGGTCGCCGCGTCGGAACCGCGTTTCGT 97488 29 96.6 32 ............................T CCGTTGACGCCGATCGACGCGACCAGGTCCTC 97549 29 100.0 32 ............................. ATCCGCAACACTCGGCACCACCAGCACCACCC 97610 29 100.0 32 ............................. GCGATCTGGGTTCCGACGTTCACCGTGCACCG 97671 29 96.6 32 ............................G AAGCCGGCCACGCGCTGCGTCGTGGCGACGGT 97732 29 100.0 32 ............................. GTCGTCGCCGAGCAGAGCCGCCAAGCGCGGCC 97793 29 100.0 32 ............................. GGACCCTGACACCCTTCGCACGTCCCGACCGG 97854 29 96.6 32 ............................G ACCACCAACGGCCAACCCTCGCGCCGAACCCC 97915 29 100.0 32 ............................. CGCGCGCAACTCGCCCCGCACTACGCGACCGC 97976 29 100.0 32 ............................. CCGCCCCGCGCACCGAAGGCCGGGCGTCGCGG 98037 29 96.6 32 ............................G AGTTGGTGCCCACCCACGCCTCGCGGCTGGCT 98098 29 89.7 33 ...........A..C.............G CGGCAGCCGACCTCGACCGCCACATCCAGGAGA 98160 29 89.7 32 ...........A..C.............G TGGAAGAGCGCCGGACGTCGCGTCGGCGGTCC 98221 29 89.7 32 ...........A..C.............T CGGTCGGTGAAGGCTTCGGTCTCCTCGCGGTG 98282 29 72.4 0 ...T....T..A..G...AT.......TG | ========== ====== ====== ====== ============================= ================================= ================== 21 29 96.2 32 GTCCTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : GCAGCGTGGGCCAGGCTGAAGCCGCCTTCGGCAACATCGACTTGGACGACGAACCCGAATGGGCGAGGTTCATCGACGCCGCATACGTGAACGGCGAGTTCGCCCACGCCTTCCGCGATCTGGCCTGCCCCGAGGAAGCCACCCGATACGCGACGGTGTCCGCCACCGAATCCGAACGCCTCAACCGCGCCCGCCGGGGAGCCATGGCCCAGGCCACTTTGGCACGGGCGGCTTTGGACAGCCACGACCTGGAAGCCGCCGCTACCGCCGGAAGCACCGCCGTGAAACTCGCCGCGACCGTGACGTCGACCCGCTCGACAGCCGCGATCCACGACCTCCGAACCCGTTTGATGCCGCATCGGGCCGCACGCGTGGTCCGGGAGTTCTTCAGCCTGTCGACGGCGCTGCTGCCCGCCGCAGGGGTCTGAGCAGGATTCCGAGACTCGGGTGAACCGAATGAAAATCGGGCTGTCGGCCACTAGAGTCCCTGGTCAGCAAGT # Right flank : GACCTGCGTGTTCGCATAGACGGGCGTCCGTGCGACGCGAGCCGGTGGTCGTGTAACCGTGTGCTGCGGGTCGTGCTCGCACCCGGCCAACGGCTGACCGTGCACTGGCCTGGCGGATCACGGACCTACATCGGACGAGAGGAGCGGTGACTGTGGGATACGTGCTCGACGTCGCCTACCGACACGGCCAACCCGTGACCCACCTACGCACGGACGCCGACGTCGACGCGTTCGTCGACCTGCTGCTCGACCCCGACCTCGACCCGCGCTACCGCGCGGCCACCGCCTACGCGGTCGATGAACGGACTGACACCGAAGGCCTCAAGCACGAACTGCTCATCGGCGTGAATCCCGCGACCGGACGTGGCGCGGTGCGCTATACCGGGGACGAGGGCACCTGGTACATCGCCGGCGGCGACGTCGACCCCGTCGGTGCCGTGGTGTTCCCCTATTTCGGCGTCCCGGCCGAGTTTCCCGCCGACGCCGAGGTCCCGGTCGAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 846464-847661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 846464 38 100.0 37 ...................................... CTCACCTCGGCCCCGGTTCGCGGTCGCTGGCGACCGG 846539 38 100.0 35 ...................................... CTCGACAAGGCGTCGGGCAAGCTCGCCCGCCGGCC 846612 38 100.0 34 ...................................... CTTTGTCGGTGCTCGTCACCCTGCACTGACGGGC 846684 38 100.0 33 ...................................... CGCTTTCCAGCACTCGGACGGGGTAACCCGAAC 846755 38 100.0 34 ...................................... TCCGCGACCACGGCGTTGACCGGAGCCGGGTTGG 846827 38 97.4 33 T..................................... TCGCACAGGCGAACTGGCAACGCGGCGGCGGCC 846898 38 100.0 34 ...................................... CGCTGCACCCAACGGCAATCACCCTGATCACTAG 846970 38 97.4 34 A..................................... ATCTGGTGCGTCGCCCACGAACCCTTACCGCGAT 847042 38 100.0 35 ...................................... GACAAGGAGCACTCGGCGGTGAGCTGGGCCGACAA 847115 38 100.0 35 ...................................... GCCGAGCTGGACGCGCTCGACGTCCAGGACCGGAT 847188 38 100.0 35 ...................................... CAGAACGCGCGCTCCGGCGCCGAGCAGAAGGGCTG 847261 38 97.4 34 ....................................G. TCTGACTGAACGCCCAGGCGGCCAGCGCGTGCGT 847333 38 100.0 35 ...................................... TACGAGTACCGGCGCGGTGGCGAGCGCGTCACGGG 847406 38 100.0 35 ...................................... AGGTGGGATGCCTTGGCCTTGAGCCGGGTGTGGGT 847479 38 100.0 35 ...................................... CTTGCGTAGCAAGGGAAAGCGGTCTGCCCTGCCCG 847552 38 97.4 34 T..................................... GCCATGACGGTGCGCGGCCGACAGGTCACCGCAC 847624 38 89.5 0 .............T...........T.T.........T | ========== ====== ====== ====== ====================================== ===================================== ================== 17 38 98.8 35 GGCAGCGCGAGCCCTCCGGGACTCGCGAGGATCGCAAC # Left flank : TGGTGCAGGCTCGTCTTCTCGCCAAGCACCTGCGTGGTGACGTGGACGCGTATCAGCCGTGGACGGTGACCTGATGGAACTGTTGGTCACCTATGACGTCGACACGACCACTCCGGAGGGTCGGCGGCGGCTGCGCCAGGTCGCCAAGGCGTGCGAGGGTTATGGGCACCGCGTTCAGAAGTCGGTGTTCGAGATCGTGTGCTCGCCGGGACAGCGACTTCGCCTTCGGGCCGAGTTGTTGGAGATCATCGACGCGACCAGCGACTCGGTTCGGATCTATCAGTTGGACCGGGGTTCGTTCGACGCCGCGGAGCACCTGGGCTCGGCTGTAAATGTGTCCCACGGGGGCACTTGGATCGTCTGATGCCGCTGCTTCGGAACCCCAAGCGTGACCTGACACGCCGGGAGGTTCCGAAGCGGACGGCGGCGCGTCATCCCGTTCTGTGGGACGGGCAAAAGAGAGCCGGTCATGTATTCGCACTCTTCCCTGCTCAGGCAGG # Right flank : TGGCTAACAGCTGGATACGGGGCTATGTGACTGGTGGGTAGCTTCAGTTCTTCGGGCTTGCGTGGTGTGCGGCTGCGCTCTAATCGTGTTCGGTTCGGCGAATGGGAGTTCCTATTCGTGTTCGGGTGTCAGTAGGTGGGTACCCGTCGAACGGAAAGCCAGCCTGCGTCTGGGTGCACGATTCGTGCGGGTGTTCCGTCGGTCGGGTGCGGGTGCTATCGGTTGACGGTGGAGGGTCCGTTGCCGTGTCCGGGTGGGTGACGGTTCCTTGCGTTTCGTGTCCACGTGATGGATCGAGACTGTCGGGGTGGCGGATGGGGTTGTCCGGTGTGCACACGCCGTTGGTCGGGATGGTCGACCTGTTCGGGCGGGAGTTGAGGAAGCGGCAGTTGGTCGTGGCCGTGTTGGCGAAGGTCGTTCGGCTTCACGGTTACGAGCAGGTCGAGGTGCCGTTGGTGGAGCGGGCCACGTCGTTCTCCGAGGAGGTCGTTGGGCGCTCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGCGCGAGCCCTCCGGGACTCGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.60,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 918641-919984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 918641 37 97.3 36 ..............C...................... TGCGCCTCGTTGACCCGCTTGCCCGCGTCGGCCTTG 918714 37 97.3 35 ..............C...................... TCGACCGCGCAGGTCAGCAATGCCTCGTACTCGGC 918786 37 97.3 35 ..............C...................... CATGGGGAGTACTCGCTGTTCGAGCCCTGCGACTT 918858 37 97.3 35 ..............C...................... CTGGCGGCCGTCGACCAGGTGCGCGACGCCCAGGG 918930 37 100.0 35 ..................................... GTCCAGGGCGGCGTGGGCGGCCTCCACGCCGGTGA 919002 37 100.0 35 ..................................... AGGACCTGTTTCGTGGTCGTGGTCGTGTTCAACGT 919074 37 100.0 35 ..................................... GCGGTCGGGGTCCCAGCACTCCCAGCGCGGCTCGA 919146 37 100.0 35 ..................................... CCCGACTGCGCACACGACTGCGCCGACATCTCCCA 919218 37 100.0 35 ..................................... GGAGCGTCCGCGACGAGAAGTAGTTGTCTTTGGGG 919290 37 100.0 37 ..................................... ACGGCATCTCCCGGGTGGTGTACCAGCGCAGTGCGAC 919364 37 100.0 35 ..................................... TCGATGCCGTCGGCCCACCGCTCCCGCTCGATCTC 919436 37 100.0 35 ..................................... TACCCGGCCGCGAACCGCCGCTGCGCGCGTGCCGC 919508 37 100.0 35 ..................................... TACCCGGCCGCGAACCGCCGCTGCGCGCGTGCCGC 919580 37 100.0 36 ..................................... CCCGTGGGGTCGATCGGGTACAGGATCGGCAGGTCG 919653 37 100.0 36 ..................................... CCCGTGGGGTCGATCGGGTACAGGATCGGCAGGTCG 919726 37 100.0 36 ..................................... ACCTGGGCCGGGGTGCGCGCGGTCCAGGCGCCGGCC 919799 37 100.0 36 ..................................... GCCGTGTAGGCGGTGAGGTCCGCCTCCTCGCTGTAC 919872 37 100.0 39 ..................................... GTCGGCGTGGGCCTGGTCCAGGGCGTCGTCGGGGTCCAG 919948 37 94.6 0 .T............C...................... | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.1 36 GCAGCGCGAGCCCTTCGGGGCTCGCGAGGATCGCAAC # Left flank : CGCTTGGGACGGCGACGGCATAGCCGTGTCAACACCGCCAAGGCGTCCCGTCGGATTCCGCCCGACCGGAGGGAGGGGCACCGGAATCCGACGGGACGCAGCGGTTTGACACGGCGCCGGCGTCGGCCAGAGTGCGTCGACCCGGTCGACCCGGGCCGGTTTGTGAGTATTCGGCTCGTGAAGTCGTCGGGGCCGCAGACCAACCGTGCGTGGGGGCACGGTATGAAGATGCCTGACGGCGTACTGGGGTCGAGTCGACTGACCTGATCACCACCGTGCCGTCGGGTCGAGGTTCTGGGCGTACCGTCAGCACGGCGGGCCAGGCCGGCGTTGCCACGGATGAGTGATCAACCGGGCGCGACCCACCACACTTCGGAACCCCAAGCGTGAGCAGACACGCCGGGAGGTTCCGAACCGCTGGGCGGCGTGTCGTCTTACTAATTGGGATCGTGGCCTGGTGGATGTTGTTAGGTTCGACGGACTTGCCTGTTCAGGCAGGG # Right flank : CGGCTCCCAGGGCCTGGGCTACCTCGTCGCTGGCTGCAGTGCAAGCCCATTTGCCAAGAGATCGCGATAGCGGTGTTGCCGACCTTTGTGGACTTTCTGCCGCGCAACCTGCTGTTGGGTGGGGGCAAAGTAGTCCGAGGGATGCGTCCGGCTTCCCTGTCAGTCGGGCGTTTGTTGGTCCGCTCGGGTCGCAGGCCATCCGTGCGCGCTGAAAGCGATGCCGGTGCGGTAGGCGTCGATGCCTGCCGCGGGGTAGTCGATGAGGTCGTCGGGTAGGGCGTCGAGGGGGAACCAGTCGACCGCGGAGCACTTGTCGGGTTCGCGGTTGGTCGGTTCGCCCGTCCACCGCAGGGCTTCGAAGAACAGGCCGAGGCGGGGTTCCAGGCCGGAGCCGTTGACGTGCAGGGTGTGGACCAGGCGCAGGTGTGCGGGGTCGATGTGGACGCCGACCTCTTCGTGGGCTTCACGGCAGGCGGCATAGAGGACGGATTCGCCGGCGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCGAGCCCTTCGGGGCTCGCGAGGATCGCAAC # Alternate repeat : GCAGCGCGAGCCCTCCGGGGCTCGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 923078-924412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 923078 37 100.0 37 ..................................... TCCCCCGCCACCCGCACCGCCATGACCCACCTGACCT 923152 37 100.0 35 ..................................... GGCCGTGTCGTGCACCGCAGCGCGGATACGCCGCG 923224 37 100.0 38 ..................................... TGCTGGCGGTTGAGGTCGCTCGCGGGGATGGCGCCGGA 923299 37 100.0 34 ..................................... TGGACCCGGCGGCGGCTGGCGCTGTGCCTAGGCG 923370 37 100.0 35 ..................................... GAGCTGAGCCGGTCAGCCCGCTCCGGTGGGAAGTT 923442 37 100.0 35 ..................................... GGTGCCGGTGGGCAGCACGGCGGTGATCTGGTCGG 923514 37 100.0 34 ..................................... AGGATGCCCTGGACGAAACTGTCCGCAGCCTTGT 923585 37 100.0 35 ..................................... CTTCGGTACGGCCTTGAGGACCGTGGTGACCCCGA 923657 37 100.0 35 ..................................... GCCGCCGTGACCCTCACCCCCCGTCTACTACCTGC 923729 37 100.0 35 ..................................... GCGGCGGCCGTGGTCAAGGAGACCTACCGCAAGGG 923801 37 100.0 35 ..................................... CGGTCGCCGTCGAGCCGCCGCCGGTGCCGGACGAT 923873 37 100.0 35 ..................................... CCGCTCGGCCCGGCCCTGGGCCTGGATGCTGATGT 923945 37 100.0 36 ..................................... GCCATGACGGTGCGCGGCCGACAGGTCACCGCACGC 924018 37 97.3 39 ......T.............................. TTCGAGGGCAGGAACCGTGCCCGGAACGGAGCCATGCGG 924094 37 100.0 36 ..................................... GCCCAGCCCTACATCCAGAAGTACCCGGGTACCGGC 924167 37 91.9 35 ....T..............G..T.............. CTGTCGGCGGGGCAGTTCATCGAACGGTTCGCGCC 924239 37 86.5 34 ...........A..T....G.C..............T ACCTTGCGTGGGGTCAGGTAGTACTGCTCGGTGC 924310 36 78.4 28 ..CT..........T..C.G...T.....-.....G. TTCCCGGCATATGCCCGCTATGCGGATG 924374 37 75.7 0 ..G...T..A.T......A.T..C.....G......G | T,G [924402,924409] ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 96.3 35 GCAGCGCGAGCCCTCCGGGACTCGCGAGGATCGCAAC # Left flank : TTCTCCCCGGCGGGGGCGTTCTCGTACTCGGTGACCACGGCCAGTTTGTAGTCCGGGGTGAACACCCGGCGCGACGGACGCGGCGCCGGGTCGGCCTGGTCGTCGCGGGAGGGCCGGGACTGCTTGTCGGATGGCGAGGACACGGTCATCAGGATCTCCGATCCCGCCCTCGATCATGAACCCACCCTCACACAGGGTGTCTCACGTAAGTCTGACCAAGAGGGGGGATCGTGTAGTACAGGGTTGGTGTGCCGTGGCGGTTTTCTGCACTTGTCGTGGGATGCCGCGAGTGTTGTGCCAGCGTGAGCGTGGATTGGAGCCGCTGCCCGTGGGCAGGTTTCCGGTCCTTCAGGACGCGCGGTGTTGGTTGTGCTTCGGAACCTCAAGCGTGACCGGACACGCCGGGAGGTTCCCAATCTGACGACAGCGTGTCATCTCGGACTTCGGGATCGCGGGTTCGTGGATCTTGCTAAGTTGGACGGACTCCCTGTTCAGGCGGG # Right flank : GCAAATTGGATGGGTGATCGTCGCTCTATTTGTCCGACGGTAGCGCCTTGAGGCTGGGGGCACGGTGGTCAAGTCCCGGGTCGGATTCTTGGGTGTGATGGCACGCGAGTGTGTATCCGGGTGGAATTGTTTCGGTGGTCACGGTCATGGTGTCGCCGGTGTTCGAGCGTCGGGTGCTTCCTTCGTGTGGGCGGTGAGGTTGTGGATGGTGTGGGCGGAGATGAGGAGGCGGGTGCGGATTCGGGTGGCGGGGAGTTCGTTGTCGTGGATGGCGCGGTAGAGGGTCATGGGGGAGACGCGGAGCAGGTGGGCTGCTTCCGCGACCGTGTAGAAGGACGGTTCGGTGTTGTTGTCGGTCATGGTGTCCTCCGTGTGCTGGGTGGGTTCAGCGTGTTCGGGAGGTTTGGTTTACGCAATGGTTGGAGTGGGGTTTTCTGGGTTTTCCGTCAAGTGACAAAGGTGACGATGGTGGTGGCGGTGTCCGGGTCCTGGACGGTGAG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCGAGCCCTCCGGGACTCGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 949142-949781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 949142 30 96.7 31 .............................G GCATCAGTTCGCCTCCAGCCAGCCGAGCACG 949203 30 93.3 31 ............................GC TCGCCAGCTACCGAGACGCCGTCGACAGCCT 949264 30 96.7 31 .............................A GGCCGCGGCGGGTGCCTCCGGTTTTGCGTCG 949325 30 96.7 31 .............................C GAGCGGAAGCCTCTGGGTCAACCTCGGGGAC 949386 30 93.3 31 ............................GG GGAGGCCACAGAGGCCGCAGAGGACGGGTCC 949447 30 100.0 31 .............................. CCGCGCTGTCCGGCAGCCACGGCTCGATCTC 949508 30 93.3 32 ............................GG TCACCGGGCAGATGGCCAACGACATGGTGTTG 949570 30 100.0 31 .............................. CACTCTGACCCGATCGGGTCGTCGGGTGAAA 949631 30 96.7 31 .............................A AGATCAGTCTGAAGGTCGTCAAGGGCGAGCA 949692 30 96.7 31 ............................G. ACGCGCATCTGGTCGTGCCGGTGACGGGTGC 949753 29 86.7 0 ......................-A...GG. | ========== ====== ====== ====== ============================== ================================ ================== 11 30 95.5 31 GTCTTCCCCGCACACGCGGGGGTGGTCCCT # Left flank : GTCCTGGGCTCGCCGCAACGCCGATGCGCGTGCCGCGGCGGGTGACACCCCGATCCGCCTGCACTCCGGCGACGTGACCGCACCGGACGTGCTGGCGGATCTGGAGGGGACGGCGGACCTGGTGGTGTGCAACCCGCCCTACGTCCCCGACGACACCCCCGTGCAGCCCGAGGTCGCCGACCACGACCCTCGTCAGGCGGTGTTCGGGGGACCTGATGGGTTGGACGTGATCCGCCACGTCGTCGGGTTGGCGGCGCGGCTGCTCAAGCCGGGCGGCTGGGTGGCGATCGAACACGACGACACCCACGGCGAGTCGGTACCCGCGTTGCTGGCGGCCCGCCGGGTGCTGACCGACGTCGAGGGGCACCTCGACCTGGCCGGTCGACCTCGTTTCGCAACGGCCCGCCGGGTGTGAGCGACGTCGGTCGCGACCCTTTCGAGACTGCTGTGAACCGAATGAAAATGGGCCAACTGCCCGATATCGTCGCAGGTCAAGAAGT # Right flank : TCTACATTTCCAAGATCACCGGAAGACTGTCGTTTTCCTGCGCACTTCCCTTGGTCGGCGTCCGGGCCTGGGCGTGGCGCGGTATGGACCGTGGCCGTGTTCTCGCTGGTTCGGGCTGGTGTCGGTTTGGGTTGTCGTCGGTCTTGGTTCTCTCGACCGGGATGGACGTGACCGTGGTTACGGTCACCGGGTGTGGTTGTGCCAGGATCGAGCGGTGAGCTGGGTATACGACTGTAGTGTTCCCGCCGATCGGGCGGCCGGGCTTGCGTCCGCGGCCACCGGCGTGCGGTCGGGCCGGTTGGTTGTGCTGCCTACGGACACCGTCTACGGCATCGGGTGCGACGCGTTCGACGCCAAGGCCGTCCGGTACCTCCTGGAGGCCAAGGGGCGCGGGCCGGACATGCCCGTTCCCGTCCTAGTCGGGTCCTGGACGACGATCGACGGGCTGGTCCTGTCGGTTCCCCGGGACGCCCGCGCGTTGATCGAGGCGTTCTGGCCCG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2455333-2456154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2455333 29 100.0 32 ............................. ACCAGGACGCCGATCTCGGCCAGCCGTGAGAG 2455394 29 96.6 32 ............................C CGGGACATCGCGGCCTGCCTCGCAGGCGCGGT 2455455 29 100.0 32 ............................. GACCTCGGCCCCGCGGCCACCAACGAGGAGAC 2455516 29 96.6 32 ............................C TGGACGATCCGGACGGGGATTCCGCCTCGGTC 2455577 29 96.6 32 ............................C CCCGGTGGTGCAGCCGCCGTCCGTGGCTGGTG 2455638 29 100.0 32 ............................. CCGACGGGCGAGACCATCGTTCCGAGCCGCAG 2455699 29 96.6 32 ............................A GCTGCGCTCGCCGCGCGGCAGGCTCCAGGAGG 2455760 29 100.0 32 ............................. TGAGGTCGGCACAGCACCAGGGCCGTCTCACC 2455821 29 93.1 32 ..............G.............T CCTGGCTGTTGCAGATCCACGCCAGCACGGCG 2455882 29 93.1 32 ....C.......................C AGACCACCCGTGACCACCGCCAACGTCAGCCG 2455943 29 100.0 32 ............................. CTCACGGCAGACCAGACTCACCCGTCTGGTCG 2456004 29 100.0 32 ............................. ACCACCGTCCGCGTCGAGTCGCTGGACCGGAC 2456065 29 86.2 32 ...C........T.T.....A........ GGGACACGGCGCCGGGAGTCCACGCCGAGCGG 2456126 29 75.9 0 .....T......T.T.......C.GC..T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 CTCTTCCCCGCGCACGCGGGGGTGTTCCG # Left flank : CAGCCTGGCACGCCACCGGGGAGTGGAGTTCGCGACCGCGCAGGTGGGTCTGGCCTACCAGGACGAGCACCTGTTCAGCTACCTGTCGTTCACGATCATGTTCGGCTGGTTCGTGCTCGCGTTCGCGGTGTACCGCAGCGGCCACTTCACCGGTGTGGTCGGCAAGATCCGCGCGGTGGCACTGGCCACCATGGGCCTGTTGCCGTTGGGCGTGCTGAAGGGCACCGAACTGCTGTCGATCGTGGGGACGGTCGGCCTCTGCGTCGCCCTGCTGCCCGAAGGCGTCCGGTTGCTGAGGACCGTTTCCCGGCCCACTCCTCGGGCCGCCGCCATGGCGGCGCTCACCGTCGTGGGGTTGGCGGCCTTCGCCTACCTCAGCACGCAGGGCTGACCGGCCTCGGTCACCCGCCACCCCGCGCCAGTCGTGACGACTGTTCCGAGACCCCGGTGAACCGAATGAAAACCGCCCCGACAGCCGCTAGAGTCCCAGGTCGCGAAGC # Right flank : TCGTCGGGGGCCGCCCCCGCGGCGTATCAGGTAGTGGCCACCAGGAGCGACTGGCCCGGCGAGGTGCTCAACGGGTGCACGGTGGGCTCCGTGAAGCCCGCCTTCGTCAGCCACGACGTGATCTCCGAAGCCGGGTACACCTGTCCGCCCTGACCGTGGAACAGGTTCAGGCTGAACACCCGCGCGAAGGCGTCCGACCCGGCGTCCGGGACGTGGTGGTCGTGTTCCAGCAGGACGACCCGCCCGCCCGGCCGCAGGGCCTTCGCCACGCGTGCCAACAACGTCACGTTCGCGTCCGGAGCACGGCCGTGGACGACGTTGAACAACAGCACGGTGTCGTACCCGCCACCCAGGTCGACCTCGTCGTAGTCGCCCGCCGCGAAACCGATCCGGTCGGTCAGGCCCGCCGCCGCGACGGCTGCCCGGCCCACCTCCACCGCGTCGGGCAGGTCGACCACGGTGGCCGTCAGGTCCGGGTTGCCCGCGCAGAAGCGGATGGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2558416-2556558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2558415 29 100.0 32 ............................. GAGGTTTGCGTAGTTCTGCGTCGAGGCCGAGC 2558354 29 100.0 32 ............................. GGCGTGGCCACGGTGAGCGAGTGGCGGGGCAG 2558293 29 96.6 32 ............................G TCGGTGGGTGGCTCGGCGGCAAGTCGGTCGCG 2558232 29 100.0 32 ............................. CCCACCAACACGTTTCCGCAGGTCGGACCGGA 2558171 29 100.0 32 ............................. GCCCGGCGCTGGCCGCGTCGAACTTCGCGGCG 2558110 29 100.0 32 ............................. CGTCTTCTCCGAGCGGCTTGAAGAACATGCCG 2558049 29 100.0 32 ............................. TCGCCGAGCGCCGGATTCGCGTAACCCCACAG 2557988 29 96.6 32 ............................G GAGGACGGTCACGATGACCAACAAGGTCTTCG 2557927 29 96.6 32 ............................G GGCGACGAGGACGGAACGATCAAGATGCGCCC 2557866 29 96.6 32 ............................G TCGGCGAAGGTGACGTAGCTGCTCTGCCAAGC 2557805 29 96.6 32 ............................G TTGTGCTGGTGGGCCTGGATCGCGAGGTCCCA 2557744 29 96.6 32 ............................T CCGGGGCCGTGCGCGTGGATCTTCGCGTCGAG 2557683 29 96.6 32 ............................T CAGGACGGTCTTTCGTCGGTGTGGAACTGTCA 2557622 29 96.6 32 ............................G TTGGCCATGGTGTTGGTGCCGCCACGGCCACG 2557561 29 100.0 32 ............................. AGGTGCGCGTAGGAGATCAGCGCGGCCCGCAG 2557500 29 100.0 32 ............................. TGCTGCGTGAGCTGGGCCGGCCGATCAGCCGC 2557439 29 100.0 32 ............................. TCGCCGCACGCCTGTGGCTCAAGCTCGACGAC 2557378 29 96.6 32 ............................T GCTCCCGGGTACCGCACCCGACCACAACACGG G [2557361] 2557316 29 96.6 32 ............................G AACGGAAAGAACGCCGGGTCGGTGATCGCGCC 2557255 29 100.0 32 ............................. GCCAGGCGCAGCGCGTTGACCGTGTCGATCCG 2557194 29 100.0 32 ............................. GCGACCCGGCCACCCGTGAGGTGCTGGCCGGG 2557133 29 100.0 32 ............................. GCGTCGTCGGCGATGCCCTGCTCGATCTGGCC 2557072 29 96.6 32 ............................G CTCGACGGCGACGAGCTGCGCGTCTTCACCGC 2557011 29 100.0 32 ............................. CACCGGGGCAGCGTCGGCCAGTTGCCGGACAG 2556950 29 100.0 32 ............................. AGTTAGAGCACGCCCTCGTAGTCGCTGCGCCC 2556889 29 96.6 32 ............................A CCCGTGTACTGGAGCCCGTGGCTGGAAGAAGA 2556828 29 96.6 32 ........A.................... AGCCATGGACGCGGCCTCCTGATCGTGTTCTG 2556767 29 100.0 32 ............................. CACTGGAGCAGGCGCGACAGCGAGATCTTCTT 2556706 28 86.2 32 .........-....C.........A...G CAGCCCTATCCGTGGCTGCTCACCCGGGCGTC G [2556685] 2556645 28 96.6 32 .....................-....... TCGGACGACCCACTACTCGTACCCGACCGCTG 2556585 28 82.8 0 .C......-..............TG..G. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 97.5 32 GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Left flank : GGCCTGCCCCGTGGGACTGAGAGGCCACCTGACCCGCTGGCTGCTGGAAATCTCGCCCGGCGTCTTCGTCGGCAACGTCACGGCCCGCGTCCGCGACCTCATGTGGTCGCGGGTCGTCGAACTCGTGCGCACCGGACGGGCGATCATGGTCCACCGGGCCGACAACGAACAGGGACTGGACTTCAAAGTCCACCACCACGACTGGCATCCCGTCGACTTCGATGGAATCCAACTCATGCTTCGTCCTTCGACGCCCCCATCGGACTCTGAAACCACGACGACGCCGAGCACTTCGTGGAGCACTGCGGGCCGACGACGCCGATTTGGCAACCGCCGATGAAGCGAGCGCCTTGGCCGATCTTCGGCTCAGGGTGCGGCGGACACAGCGACCCTCATCCCTTCGGAGCAATGCAAGCCTCGCTCACGTACCTACGAACCACGACCGACACAAACCGAACGAATACCAGCCAGTAGCCACATAGACCTCCAGGTCAACAAGT # Right flank : CGTCACGACGGCACGCGCAGCCGAACCGGCGACACAACGAAGTGGCGAACCTGCCGTCACCATCCGATCACCTGGCGTAGCATCCGGGCACGCCGTCGAGGGGAGAATCGTGTGGCGCGGGTGTTCATCAGCCACGCCAACAAAGACCTGGCGATCGCGGTCGAGGTCTGTGACTGGCTGAGAGACGACCGGCACGAGCCGTTCCTCGCCGCGGACCTCGGCGGGGGCATCCCGGTCGGCGAGGACTGGAAACAGCGCCTCTACCGGGAACTGCGCGGTGCCGACGCCGTGGTCTGCGTGGTCACCGAGGCGTTCGTCGAGTCCAACTGGTGCGCGGCCGAGGTCGGCATCGCCGACTCGCTCGGCTGCCTGCTGCTCCCGATCCAGGCCCAGCCCGGCGTGAAGCACCCGCTCATGGAGCACCTCCAGTACACCGACCGCCAGGCCGGTGCCAACGTCGTCCGCGAACAACTGGGCCGCGCACTGCGCGACCTCGACCT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 3163989-3161093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3163988 29 100.0 32 ............................. CCGGCCAACCCATCGACACCGCCAGCCTCGCC 3163927 29 100.0 32 ............................. GGCTCAACCACGTGCGGTGCGCGCTTGCCACG 3163866 29 96.6 32 ............................G TCCACCACCAGGTCGCCGTCGCGCGCATGCCC 3163805 29 100.0 32 ............................. AGGTCGACTTCGCGCGCGGTGCGGGCGATCAC 3163744 29 100.0 33 ............................. CGTCGGCAAGGCCGCTGACGAGCAGACCGGCGA 3163682 29 96.6 32 ............................G TCCAGAATGGTCGGAGTCGAGCTGACGATCAG 3163621 29 100.0 32 ............................. ACCAGCGCCCAGTTCTCCGCGACGATTCCGTT 3163560 29 100.0 32 ............................. TCGTCGACCGCGCTCGCCAAGCGCGCCCGCAT 3163499 29 96.6 32 ............................G TCGACCGCGCAGGCGATGTCGCCGCAGTTGGG 3163438 29 100.0 32 ............................. CCGGCGCGCTTGCTCGCCGCAGTCGGTGAGGC 3163377 29 100.0 32 ............................. GGCAAGGACTGCCTTCACGTCGTCTCGGAGTG 3163316 29 100.0 32 ............................. GCGGCACCTCCTCGACCGGCAAGACCGGGCGC 3163255 29 100.0 32 ............................. GCTGACCTGTGGGTCGCCGACGTCGTCGACGA 3163194 29 100.0 32 ............................. TGCCCGCCATCAGCAGGTCGTTCCGGGATCGC 3163133 29 96.6 32 ............................G CTCGCCGCCGCCCTGGCCGCCCAGCACGCCCG 3163072 29 96.6 26 ............................G TCCACGTCCTGCCCGTAGAGCAGGGT 3163017 29 100.0 32 ............................. TTCTCGGTGAGTGCCGTTTCCTGGCGCTTCAA 3162956 29 96.6 32 ............................G CCGCATTTGCCGTCCTCGTAGGCGATACGCAG 3162895 29 100.0 33 ............................. GCGGTCGAGGAGATCGTGGTGTCCGAGACGGAC 3162833 29 100.0 32 ............................. GCGCCTGGTGGCTGCACCTGCCCGTCGCACTG 3162772 29 96.6 32 ............................G AACTGGTCGACGAACTCGTCCGGGGTCATGCC 3162711 29 100.0 33 ............................. GCCGGGCGGTCCGGGCGCGACGACCGGGTCGCG 3162649 29 100.0 32 ............................. GCGCCCTCATGCTGCCCGCCGTCCGACCAGAT 3162588 29 100.0 32 ............................. TCCATGCGGTTGCGGACCTCGCGGACCAGACG 3162527 29 100.0 32 ............................. GGGCGCGGGCGGATGGGCCACGCGCGGTCGAT 3162466 29 100.0 33 ............................. CCGACGGACTGGTCCTGGCCGACAGTCCCACCT 3162404 29 100.0 33 ............................. CGCCACGCCCACCACCTGGGCCGGGCCCACTAC 3162342 29 100.0 32 ............................. AACAGTCGCGCCGAGGTCCCCACCGCCAACCG 3162281 29 100.0 32 ............................. GGCCGGACAATCTCGAACTCCTGCCAGTCCAA 3162220 29 96.6 32 ............................G TCACGCAGCAGCGCGTTGATCGGCCGTCCGAG 3162159 29 100.0 32 ............................. CGGCGACCCAAGGTGTATGACCTGCTCATCCC 3162098 29 96.6 32 ............................G CACAGGTGCCATCGAGTTGCTGTCCGCGCCCG 3162037 29 100.0 32 ............................. GGGCGCACGAACTCCCGCCGGTACCCGACCAG 3161976 29 100.0 32 ............................. TGCTCGACCGGCTCGACGCCATGCAGTCCTAC 3161915 29 100.0 32 ............................. ATCTGCCCGGCCCCGCCATCAACAAAGGCAGG 3161854 29 100.0 32 ............................. ACGAGCCGTTCGCCGTCGCGGCGTCCGCCGAA 3161793 29 100.0 33 ............................. TCGCCGAGGAGACCGGGATCGCCGTCCCCGGCC 3161731 29 100.0 32 ............................. CCCACGACGTGTTCCCGATCGAGCTGACCGCC 3161670 29 96.6 33 ............................G GCCGAACCTGCGGAACGTGGAGCACCGCTCCTG 3161608 29 100.0 33 ............................. TGGCCGACGCTGGCCCAGCGGATCGGCAAGCCC 3161546 29 93.1 32 ...................A........G CCCCGCAAGGTGTTCGTCAACTCCATGTCCGA 3161485 29 93.1 32 .........................C..G GCGAGGTTGCCGACCTCGTAGTGCAGAGGCAC 3161424 29 100.0 30 ............................. CCTGCGCTGCGCCTGGGTCCCGATCTTCTT 3161365 29 100.0 32 ............................. GTGATCATGAGGTCGTCGGCCTGGCGCAGCGT 3161304 29 96.6 32 ............................G GGTCAGCCGAGGGGGTCTCATGGACCGGTTCC 3161243 29 96.6 33 ...................A......... GTCAGCCTGATCCCCGACGGCACCGTCCTCGCG 3161181 28 82.8 32 ............T......A.-.....TG CTTGTTTACACCACCATGCTCGGCGGCATGCT 3161121 29 72.4 0 ..TC..........TT.........CTTG | ========== ====== ====== ====== ============================= ================================= ================== 48 29 97.9 32 GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GACGAGTCGCTGCCGGACGTGCTGCTGCGCGCTCACGACGAGCTGATCACCGAGTACCGGCCGGGACCGGAGTTGGCGAAGCTGTTCACCGAACTGGTGACGACGGTGCCCGCGATCCAGTCCCGGATGCTGCGCGTGGCGTTCGAGGCCCAGCGCCGGATGGCCACCGCGCTGGTCGAGCGGTACCCGGACGAACTCGACGCGATCAGCGCCGCCGCCGTGGTGGGCGCGATCGTCGGCGCCACGCACGCGGTCGCGCTCACCAGTTACGAGCTGGGCCAGTCCGGAGACGAGTACCGGGAATCGCTGGTGCGCGGCATCGGGATCGCGTTGCGCGGGTTGACACCGCCGAGGCGTTGAAGGTGCCCGTCGGCGATTTCGTCGCGGCGGGTCGGACGGCCGGCAAACGCCGGGCCACCGGCGGCTGTACCGGATTACGAGACACCGACGAACCGAATAAAAACGGAGGGTTCCGCCGACAGAGTCCCAGGTCAGCAAGT # Right flank : ACGCATGACCGCGAGAACCGGCGTGGTCAGCGCGGGACGATGCCGTCGAGGACGGTGGAGACCAAGCGATCCACGAAGGACGGATCGACGGACTCCGGCAGCGGGGCGTTGCGGTACAGGTGGGGCATGACCAGTTCGTGGCACGCGCCGATGAGGAGGGTGGCTACGATCTCCAGGTCGACCCCGACGGCCACCTCCCCCCGTGCCCGCTCCCGTTCCAGGTAGCCGACCACCGCAGCACGCAACCCCAGCCCGGCCACCAGCGGGTTGGGCAGGGCGTCGAAACGGGCCATCACCTCCGGACTGCCCACCAGGCCGACGAACGCCGGGAGCATCACGATGTGGACGGCCAGCGCGTGCGTGACGAGCGCTTTCAGGTTCTCCGCCAGGGTGCCGTCCAACGTCGGACTGCCGTGGGACCGGTCCACGGCACTCACGTGCGCGTGCAACGCGAGCGCGAGCAACTCCTCCTTGTCGGAGAAGTGGTTGTAGAGGGCCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5448897-5449355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5448897 30 96.7 31 ..............C............... ACTGGGAGTACACGGGCTCGGGCCACCGCGA 5448958 30 93.3 31 ..............C..............G GGGGGCGTTCGCCATTTCTGGGCTCCGTGCC 5449019 30 93.3 31 ..............C.............G. CCGACGGTGAGGGCGAAGGGCCGGCCGACAC 5449080 30 90.0 32 ..............C.............GA TGTCGTGCCGAGATGGCCGGCCGCCGCGCAGC 5449142 29 90.0 30 ......................-....GG. ATCGTCGATGGGAACGCACACCGCGTACTC 5449201 30 96.7 31 .............C................ ACCCACGACCAAGCGCACGCGCGCCCCAGCA G [5449210] 5449263 30 100.0 31 .............................. AGATCCGCGAACTCCCCGTCGGGCAGGCCCT 5449324 30 90.0 0 ..........................T.GA | GA [5449347] ========== ====== ====== ====== ============================== ================================ ================== 8 30 93.8 31 GTCTTCCCCGCGCAGGCGGGGGTGGTCCCC # Left flank : CTCGCTCGACTAGGGTGGATCGCATGCGTGCACGTGGACCCCTGGGCTTCCGGTAGTTGCCGCCGGGAAGGTCCCGAGCGGTGTACTCCGGGGGAGTCCCATGTCCCGCACCGCACATCCCCGCACGGTCGAGGGGTCTCGGCCGTGGCGCTCGATCGTCGTGGTCGACCTGCGCTACGACCACGCTTGCTTCGCCGAGGCGCGGGGCGAACGCCCTCGTCCCCGGCTGATCCGCCGCCGGGTGGCGGTCCACCGTTTTCCGCGTGGGCGCAACGACTCGGACGTCCGTGACCGCGCCCAGGTCCAGGAGCGTCGGGCACGCCGACGGCTTCGGCGTGAGCTGTACCTGGCCCGGGTCGCCGGGCTGGAGGACGTGGTGCCCGCACGGCATCGGCGTGACGCCCTCTATCACGGGTGAGGTGGGGTGGTCGTGTCGCCTCCGCCTCGACGGAACCGAATGAAAACCGGGTGACGCGCGATAAAGTGCCAGGTCAGGAAGC # Right flank : AAATGTGCTGATCAACCCACATGACCCCGTTTTGTCGGTGGTGGTCGCTAGCTTGTGCTCAGTCCACGCGGAGCCCAGGGAGCGAGCACATGTCAGGCACGACGTACCTCGAACTGTCCGAAACGGGCGGTGGGGCGCACAAGTTCTACGAGGTGCGGGTCGACGGCACCGAGGTCACGATCACCTACGGTCGGATCGGGGAGCAGGGGCAGATCCGGACCGCCTCGTTCGCCGACCACGACAAGGCGGTCAAGGCCGCCGAGAAGAAGATCGGCGAAAAGGTGCGCAAGGGCTACGCCCCGGCAGTGAAGGGCATGCGCCAGCGCAGAGCGGTGAGCCGCCGGCAGATCGTGAGCACCCGCTCGACCGCCCGCCAGGCCCCCGTCCTGTGGCGGTTCGCGTCCGGCGCTCCCGCGTTCGGCATCTTCATCGGCGAGGACCACGCCTGGGTGGGCAACGAGAACGGGGACGTCTACACGCTCACCCACGACGGCCGGGTC # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCAGGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 6232557-6232888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6232557 29 89.7 32 GT..........................G TTCTCCACAGTGGACGTGTAGAGGTTCGCCCA 6232618 29 96.6 30 ............................G GTGGGCGTGGACGTGCTTTCCGTCTGCCAG 6232677 29 96.6 32 ............................G TCTGGCTGCGACGGCAGGTGTAGGCGAGACTA 6232738 29 100.0 32 ............................. ACCGTGCAGGCAGCCGAGCAGGGGCGCCTGAC 6232799 29 100.0 32 ............................. CCGCCGCCGGTCCCGGGAAGGGTCCGGGTCGG 6232860 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 ACGCTCCCCGCACATGCGGGGGTGGTCCC # Left flank : ACGGCGAGCCGGGCGAGCGCTGACCGGCTCTGGTTCAACCACCGCCGCTGAGCACGCCACCGAACTCGGCTTGAGGCGATCTCGGGACTGGCGTCGTCGGATGCGATGAGGCCACGGGCTTGGCCTCCGGACAGCCCGAGGTCTTCGGGAGCGATGCCCAGACGTTCGACGAACTTCCGACGCAGTTCCAAGGAGACCGGACGAGCACCGTTCTCCATTTGACTGAGGTTCTGCTGCGTGATGCCGAGCACGGCCGCCACCGAGGTCTGGTTCTGCTTGGCCGCCTTGCGCCACTCGCGCAACGCTGCTCCGGCATCGTCGTTGAAGGTGCCGCTCGGTCCTCGCACGAGCCAGGCGTTCGTGTCGTCCATCCGTCCCCTCGGTCGTCCCTCATACTGGCACCATCCGAGAGAGCTTGTGCCTGAGTGTCGATCACGGCGACACGAGAACAAGTAAATGAGAAACACTGTTCTGGTTCGAAGACGCGCAGGTCAGGAAGT # Right flank : CGGCCTGTTTCGAGAGTGATGGGCATACCGGATGATCCGAATCGAATAGCTCAGCCGACGGCGGCCAGGGCAGAAGTCTCCATCACCGGTAAGCGGGCCAGCGAATTTCCAGGCGGGCTCCGCCCTCGGGGGATTCGGTTGCCCTTACGGCTCCTCGGCGGCGGCTTACGAGGTGGGCCACCAAAGCCAGGCCCAGGCCGAAGCCGCCCGTTGCGCGGCCTCGGTCGGAGTCGACCCGGTAGAAGCGGTCGAAGACCTTTTGGCGGTGTTCCTCCGGGATGCCGGGGCCGTCGTCGTCTACCAGCAGGCGCACTTGGCGGCCTGCCGGCAGGACCGACACCCTGATCAGCGTTCGGGCGTGGCGTGCGGCGTTGCGCAGAAGGTTGTCGAGGACCAACTCCACCTCGGTGTGGGCTGCTGAGATCAGGCAGGCACTGATGGGGGCGCTTACCTGAACCAGGAGTTCCTTGGAACCAAGCCGGTCAACGGCGGACTGGGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTCCCCGCACATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 6414872-6415206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6414872 28 92.9 33 ...........G...............T CCCACTTGCCTTCCAAGCGGTTTCACACGGAGT 6414933 28 96.4 33 ...........G................ CTGCTACGCGAGCGTGCGGGACGTCAAGGACGT 6414994 28 100.0 33 ............................ CGCGATCAGGCCAGCGCCGCCGCCGCAGCCGCG 6415055 28 100.0 34 ............................ TGGCGGACGCATACCGACTCGCCTGCGATAAGGA 6415117 28 96.4 34 .....................G...... GTTGGCGCGCACCATGCCGTATGCCCTGGTGCGG 6415179 28 67.9 0 .C..........TG.....C.GA.CCA. | ========== ====== ====== ====== ============================ ================================== ================== 6 28 92.3 34 GTCTTCCCCGCACACGCGGGGATGGTCC # Left flank : CCCTGGCCCCACCGGGCGCCGCGACACCCACGTCCGCCGAGGGCAGGACCCTGGGGTCACCCGCCGGCGCGGGCGAGATCCTCACCGACGCGCGCCTGACGACCGCGGATCCGGATACCGCGACCGTGGCCGTGAAGCCGACGGACCCGGCCGTCCTCACCCTGCTGAAGCCGGGCGGGCGGGTGGATGTGGTCACGGAAACCGGCGTGCTGGCCGAGAACGCGACAGTGATCGCCGTCCACGACAACACGGTCGTGGTCCTGTCGACGGACGCCACCACAGCGGCCCGCGTGGCCACCGAGTCCCTGACCCATCCGTTGGCGGTCACCGTCCACTAACCACCGGCCTGACCACCGGGTCGCCTCCCTGGCCACCTCCAGGAGGCGACCCACCTGCCAGGATCAAGCAGGCTGGCGACGCACCACCCTCGACGCCCCAGCCCCGCCAAACCCGAATGAAAGCCGACCCAATCCCCGCCAAAACCCCAGGTCAACAAGTGT # Right flank : CCTCATGCCGGCATCGGCGACCGATGCAGTCCTCCCCTCGAGAGCGGGTCGGGGCCTCTCCCGGTGGTGGAGGTGGCCGGGTTTCCGCACCCGTCGGGTTGCCGCCGCGGGTCGTGGCGGTCTTCCTCGCCCAAGAAGGCATGGCGGCGGTTCGAGGAGGGGGCTTCCGGCGAACGAGCGGGTGTCGTTTGTGGACATTCCGAGTGGATGGTGGGCTCGCACGGGCACCTTGGCAGTGCGATCTTCGGGGCTGGTCGGAGGGGGTGGCGTGGGGGTCGCTAACCTCCCGCTCGCCCTCAAGTCGTCCTCCCGAACGGAGAGCAAGTCGTGATCAAGGGCTTCAAGGACTTCCTCATGCGCGGCAACGTCATCGACCTGGCCGTGGCCGTGGTCATCGGCGCCGCGTTCAACGCGATCGTCACGGCGTTCACGTCGAACCTGATCAACCCGCTCATCGCGCTCTTCGGCGGCAACGACGTCAAGGGCCTCGCCGTCCAGCT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGATGGTCC # Alternate repeat : GTCTTCCCCGCGCACGCGGGGATGGTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 6799539-6799750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJS010000001.1 Saccharothrix violaceirubra strain DSM 45084 Ga0436958_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6799539 29 100.0 32 ............................. GCTCCGCTGGTCGTCAACGCCCTGGTCGAGGC 6799600 29 96.6 32 ............................C GGCTCACCGCGGCTCGTGCGCTCGATGGTCAT 6799661 28 86.2 31 .GTT.............-........... GGACGCCCAGGCGCGTGGCGATGAAGTCGGC T [6799681] 6799721 29 79.3 0 ................TA...AC.AC... | G [6799747] ========== ====== ====== ====== ============================= ================================ ================== 4 29 90.5 32 GTCGTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGCGTTGGCCGGCCGGGTAGTAGTAGTGGTCGTCCGCGATGTCGTTGAGCTCGCGGGTGCCGGTGGGGACGCACTGCACGAAGACCCGGGAGTCGAACATTCCGGCCCCGTACTGGAGTGCGACCTCGGAGGCGGTGGTGTTCGCGATCGAACACCCGGACACGGCCAATGTGGCGGTGGCGAGCAGGGCGACGGTAAAGCGGCGGTTCACAACGTCTCCTGACGTGATGACGCGCGGTGCGCGTGGAGCGGCTGGCTCGGACGGCGGATGACGAGACGGCATCGAGATCGCGGTATGGGCACCCCGACCTCGTACGCGCGAGTATGGCGAGACCGGCCTCCACGCCGAAGGCGAATGCGTCGGCATCGCTCGAACGCCCACGGACGCAGCACCCCGCCTCGGATCTGGGGGGATTGCCGAGCACTGATCGTCATTCCGAAACCGACACGAACCGAATGAAGGCCGGCCTGAGGAGCGCTAGCGTTCCAGGTGGGCAAAC # Right flank : GGTGGTGCGCGGTGCCGGCCGTCGGGGCGTCGTCGTTCCGTGCCTGTGGAGATGATCTGGCCGGGACTGTTGTCCGACGTCGAGGACGGTCGTTGTGTCTGGTCAGTGGGGGTGGCTGCCGCCTGGCGGAGGTGGCGGCAGCCCTGCCCGTGGCCGGGTGCGGACCCGGTCGGAGGGAGTTTTCGAGAACTCCGCAAGTCCTCGGGGGTGGGGTCGTTGTGGGGGTTAGCGGGTCATCACCAGTCGGGCTACGCGGGCCGCTGTCACCCACAGCCATCGGGGGACCGGGGTCCTGTGGGCGTGGTTGGGCTTGGTGGTGGGCCGTTGTTGGGGCATTTGTTCTTCTTGTCCTGACTTGGTCTGGCTGTGGGCGGTTGGGTATGCCCGTTCGATGGTTCGGGTATGCCTCAGGGTCGCACTTTCGGGTGAAGTGTTCGCTCCTGTCCATTGACATGACGTAACGTAACTGGTGCGTGAGCCGCAGTCACGCACTGTTAGGC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.00,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //