Array 1 6436737-6437733 **** Predicted by CRISPRDetect 2.4 *** >NC_014318.1 Amycolatopsis mediterranei U32, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6436737 28 82.1 30 .GTT........A..C............ TGTCGTGTAGCGGGTGTCGTCGTCGTTGGG 6436795 28 85.7 30 .A...TT..C.................. CTGCCCGTGGCGGAACCTGATCGTCACCAA T [6436802] 6436854 28 85.7 33 .C......AT................G. CGCGCCTTCGTCCCAGCTGGCCGGCTCGACGAT CT [6436858] 6436917 28 85.7 30 A.TT..................G..... CAGGGAGATCGACACGTCGGACAGCGTTTC 6436975 28 89.3 30 .CG..T...................... CGGAAGCCGGTTGAGCTTCGCGCCGCACCG 6437033 28 85.7 31 TC...T................C..... GCAGGCCGACTACGAGAAGCAGAGCCCGCAG TG [6437039] 6437094 28 82.1 33 .AGC......T..........T...... GATCCCGCAGTAGCGACAGGTGTCGCCGTCGCG 6437155 28 82.1 31 ..TT.......A.G.A............ ACACGATCGGCGGTTTCACCCGACCTTCGCG 6437216 28 96.4 33 ........................A... CGCATTGGCTAGATTGTTCTGGAAAGTCTGATC 6437277 28 89.3 33 ..T..............T......A... CGTCTCGAACGTCGTGGGCGAGACGACGTGCTC 6437338 28 92.9 33 ..T..................T...... CGACTTCAAGCTGCGCCTGGTCACCCTCGGCGT 6437399 28 96.4 33 ............A............... GCCGTTCGGGTCGCACTCGTACGTGGGCAGATC 6437460 28 100.0 33 ............................ CGTCACCTGCCCGCCGGGCTACACCAGCCTGTT TG [6437483] 6437523 28 92.9 34 ...............A..A......... GGACGGCGTCAAGAACTGGTACGACGAAGTGGCA 6437585 28 92.9 33 ........T..A................ CTACGTGTACGTTGGCGCCTACGGAACAGGAAC 6437646 28 100.0 32 ............................ CGCTCGGGCAGCTCAACCTCGCCACTGTCTAC 6437706 28 85.7 0 C.T..T...A.................. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 89.7 32 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : GTCTCCGCGCACGCGGGGCTCGTCCGCGCCGAGCAAGCGAAACAGCGGCGACAAGATCGAGTTGTCGCCGCACAGGGCTGGTCACCCACCCGACTGCGCCAGGTCCCGTAGAACGGGTCACCCCCGCAGCCTCGAGGCTGGCCCTATCATCGACCCCGTAGCTGCTGGAGCGCCAACAGTCCCCTCGTCGCACGCGCAGGCAGATCCTGACAAGTTGGGCGATAACTTCAAGGAGGTAACGAGCGTCCTTGATTACCGCCAACTATTTCTCCGCAGCAGAGACGTGTGGGTGCGACGCAGTTCCTTGCGTCGCGCCGACCGTGAAGCATCCGGAAGACGCGATGACCACCGGTCTGGCGGGCGCTCACTGGAGGGTGTCACGGTGAACACCGAACAACTTCGTCGACTAGGCAAGATCAGCATCGGCAGACGCTGCGAACACCCGAGCCAAACTGAATAGAAAACACTGTTTCACTTGGTAGAGTCGCAGGTCAGCAAGA # Right flank : CCTCGATCGAATGTCCGAGGAATTTGACGCGGCCCCGGCACCGGCTGTCGAAGTCGTTGCTGCGGCAGGGTTGCTCTATGACGGCACTGCATGGACCGGGGCACTGAAGCCTGGCTGCGGTCGCTGACCTTTGACCGGGTCGGGGTCCGGCTGGCCTTCGAGGAGGCCTTCGACGCGGTGCTTGCTACGCGGGCTCAGCGGGCCCGGCTGGACGCTGCGATCACCGAACTGGCGGCGCCCCCGGTGTTCGCGCCGGTTATGGGGCGGCTGGCCTGCCTGCACGGGGTAAGCACGCTGACCGCGTTCGGCCTGGTGACGGAAATCGGGGACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6438560-6438832 **** Predicted by CRISPRDetect 2.4 *** >NC_014318.1 Amycolatopsis mediterranei U32, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6438560 28 96.4 33 ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6438621 28 100.0 33 ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6438682 28 100.0 33 ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6438743 28 100.0 33 ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6438804 28 89.3 0 ..C....................A..A. | G [6438821] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Left flank : GACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAGCCGGGAGCTGATCCGCCGCCAGGACGGCCAACCACCGGCGGTCCGGCAGCGGGCGGAGGTCGGCAATCGGCGGCTGCACTGCCACTGGACTCGCTTCGAAGCCCGCAGCAGACGCCCCGCCGTCAGCGCGGTCGCCGTCGCCCGGGAACTGGCCGGCTGGTGCTGGAGCCTCGCCACCCATGGAACCCGACACGGGCTGACTCCCCCGAAACCGCCGGCGGGAGACCGGCATGCGCAGACAGGCGCGAGGAACGACCCGCGATACAGCGATGAGCAGCACCGTCCCCAGCGAAAGTGCAATACTCGCCCCAAGACAGGTCAGCAAGT # Right flank : CTACAGGGCTAGATCTCTAACATCTGGAGCCGGAGGCGGCGTCTGACGTGGTGTCGTCGGGCGTCCGCCTGGTGTTCGCGGCGCCAAGCAGACCAGCGAAGGCCGTGGTCGATGGCGTGATCATCTTTGTCGGCGAGGTTGAACAGGTGTCGGATCTCGGCGATGGTGAGCGCGATCAGGTGCCGGGTTCGGGTGGTCAGGGTGTCCGTTCTGTCCACAGGTGGAGTTCTTCTTTTTTTGCTTTGTGTCTCATGACTGCGAGGAATGCCATGGCGAGCATCGAGAGGGTGATGTGCCGGTACCAGGCGTGGTAGAGGCGGACCTGGTAGTTGTCGAGCCCTGCTTCGTTTTTGGCTGCTTCGAAACATTCCTCGATCGGCCAGCGGGAACCGATGACGCGGACCAGTTCCGTCAGCGGTTCCCGGTGCGGGTTGTAGCAGTGAAAGTAGGCGATTTCGCCGTCTGCGATGTTCCGCCGGAACACATACTGGTGACCGTCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCACGCGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6441372-6442177 **** Predicted by CRISPRDetect 2.4 *** >NC_014318.1 Amycolatopsis mediterranei U32, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 6441372 28 82.1 33 ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6441433 28 100.0 33 ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6441494 28 96.4 33 .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6441555 28 89.3 33 ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6441616 28 100.0 33 ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6441677 28 92.9 33 ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6441738 28 92.9 141 .......................CC... CAGGACGTCGCCGGACTCCCCATCGAGAGGCGGGCTACGCCCGAGAAGGCCCGCCCGACCTCATCACCGCCGAGTCGTCCCGTCAGTAGCGAAGTGAACGAGAAACACTGTTTCCAATGATAGATTCGCAGGTCAGCAAGT 6441907 28 85.7 33 ..T........ACG.............. CTGCACGACCGGCCAATCGACCGCCTTGTAGTC 6441968 28 82.1 33 ..T........ACG...A.......... CACGAAGTAGATGCCCGCGTGCTGGATGGTGAG 6442029 28 89.3 32 ..T........AC............... CATGCCGGTCACACCGCTCGGATGCCGCCGTT 6442089 28 89.3 33 .........A..C......A........ TTGGGTGGCCGACTTCCTCGGCCTGGACAAGCT 6442150 28 92.9 0 ............C.........C..... | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 12 28 91.1 43 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Left flank : TTGCATCTGGGCTGTGAGCAGGGTCAGAAGCCGTTGTCGATCGTATTGACCGCCGGGCAGCGTGGCGACAGCCCGCAGTTCATTCCTGTCCTGCGTGGTATCCGGGTGCCCCGGCTGGCCGGTGGTGGGCGGCCGCGCACCCGGCCGGATCGGGTGCTGGCGGATAAGGCTTACACCTCTAAGGCAAACCGGGCTCACCTGCGCAAACGTGGGATCAAGGCGACCATCCCGAGCAAAACTGATCAGGACGCGCACCGCAAGGCCAAGGGGTCGAAGGGCGGCCGGCCACCGGCTTTCGACCCCGAAACCTACAAGCAGCGTCACGCCGTGGAGTGCGGTATCAACCGGCTCAAACGCCACCGCGCCGTAGCCACTCGTTACGACAAACTCGCTGTCCGCTACGAAGCCACCATCCACATCGCAGCCATCGACGAATGGCTCTGACCGACTTCGATACAGGCCCTAGGTCCCGGCTGCCCGATCCAGTGGTGCCAGTCGTC # Right flank : CGGCGGAGAGCGACAATAGCTCTCCGCCGAGAGCACTATCTGAACTGCGTTCGCTGCCAGTTGGGGTTAAAAGTGAGGTAACCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGAA # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //