Array 1 441146-442456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034938.1 Pectobacterium odoriferum strain JK2.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 441146 29 100.0 33 ............................. TCAATCATTAAGTTGTTCATCGGTTCTCCAGAG 441208 29 100.0 32 ............................. TTCTAGACTTGCCCGCTGGAAATTTTGGTTTG 441269 29 100.0 32 ............................. TGGAATTACGTGAGCCGCTCTTGGTTCAGGTC 441330 29 100.0 32 ............................. CACTGGCAACTCACCGACTCCCAGCACAATGT 441391 29 100.0 32 ............................. TAAAGTTCCGGGGAGACAGGTCACATGACTGA 441452 29 100.0 32 ............................. TTCATGCGGTTGGAGCATGCGCATTCCAATAT 441513 29 100.0 32 ............................. AACGGGCCCTGTCGAATAGTAAAACGGTCTAC 441574 29 100.0 32 ............................. GCAGAGCAGCGTAAAAACCTGCCCCGACGATT 441635 29 100.0 32 ............................. CACGAAAATCGACAACGATTTGCGCTGTGATT 441696 29 100.0 32 ............................. CATCGTCGGCGGTGTTGTAACTGGCGTGGGAG 441757 29 100.0 32 ............................. GCGCGTGGGTTAATGTTACTGATTTGACATTG 441818 29 100.0 32 ............................. CAAATTTAAATCTCTTTGGGTATAACAGCTTT 441879 29 100.0 32 ............................. CCTAGGAGAGGTTATAGCTTTATTTGATGATG 441940 29 100.0 32 ............................. CGTTATCTCTTTCAGAGATTTGCCGTTTCGAT 442001 29 100.0 32 ............................. TATTCATGTTATTTACCTCCGCGCAGTTTGTT 442062 29 100.0 32 ............................. CTGCGCAAACCAGCAGCCGTGGTTATGTACAA 442123 29 100.0 32 ............................. CCACTAGATTGTGATAGCCGAACTCGTCCGTG 442184 29 100.0 32 ............................. TAGAGCTTATTAAAGATTGGGATTCTCATGAT 442245 29 100.0 32 ............................. GCTGGCTTACCGTTCCATGTTGTGCGGGAAGA 442306 29 100.0 32 ............................. CGCCAACTTTGATTACCGGAGCTACGTTGCTG 442367 29 100.0 32 ............................. GATACAGGGCAAATCGAACAGGACTGTGACGT 442428 29 86.2 0 .......T..T.T..............T. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCAGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGAGCAAATCCCGCTTTGGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGAGCTGTTCCTGTTGGTGAGACGACGCGGTATGATTTCACCCGAATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4054600-4055047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034938.1 Pectobacterium odoriferum strain JK2.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4054600 28 100.0 32 ............................ AGCGCCAGTGGGCTGACTGGTAACAATGTAGA 4054660 28 100.0 32 ............................ AGCAATAAACGCATCTTTGAACTCAGCTACGT 4054720 28 100.0 32 ............................ ACACACCCACGATGTCCTGATACGCGGACAGT 4054780 28 100.0 32 ............................ AATATGTATGGGAGCGTTCAGCAAGCGGGATT 4054840 28 100.0 32 ............................ GTACCCGAATGACTGAGAAGCGCCAGATGGGG 4054900 28 100.0 32 ............................ ATTCGGCGCTAATGTAATGCCTGCTGCTGTGG 4054960 28 100.0 32 ............................ TTTAACTTTTCTTGCGCACAAACTCGTGCTGG 4055020 28 82.1 0 AC...........C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGAATGATGAGCGGATTATTGTTGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATCATCCGGTCAGTCTGACCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTTGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGTCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAAATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4062035-4061464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034938.1 Pectobacterium odoriferum strain JK2.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4062034 27 89.3 32 T.........-...G............. AGCGTCGAAATCTTCCCGCCATTCGTCTTCGT C,GA,T [4062017,4062028,4062031] 4061971 28 100.0 32 ............................ TAATAGACCAAGCCCGTAAACAGAACGCCATC 4061911 28 100.0 32 ............................ AGAGATGATCGCCGACACTCTCGATGGAATTG 4061851 28 100.0 32 ............................ GTCCGGCAACCAGACTGATTTGATGGAATCAA 4061791 28 100.0 32 ............................ CAAAAGATTACAAGCTGTCACGTCGGATAATT 4061731 28 100.0 32 ............................ CTCGTTTTCCGCCCGCTCAATGCCATCAACGC 4061671 28 100.0 32 ............................ ACCGATGGCAATACGCTTAAATGCCGCCTGTG 4061611 28 100.0 32 ............................ TTGGTTATAATGCAGACGCCGACCGATGCATC 4061551 28 100.0 32 ............................ TATTTGGAGCGAGTGGCCGTCATGGATACCCA 4061491 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCCAGCGACGCATCCCGATAAGCATCTAGCTGCCTGCACGGCAGTGAACACAGCCGCTTGTGCATCGATTTCAGCAATTGCTTTCTAATCTGCCTGTGCGGCAGTGAACCAAACTTATCAGGATGATAACTAAGCCAAAACTTTCTAAGCTGCCCGTGAGGCAGTGAAATCCTGTGTCTCAGCAGACATCTGTGCATCGGGTTTCTAAGCTGCCTATACGGCAGTGACCCCCATACCCCAGCCAGCGCATTATCAGTCATTTTCTAAGCTACCTATACAGTAGTGAACGTGCAGGAACGCAATTCACAAACCCATTAAACTTTCTAAGCTGCCTGTACGGCAGTGAACCCACTTGATGCGCTGACACATGCTGGTGTGTGTTTCTAAGCTGCCGCATAGGCAGTGAACCTGGGTAACACCGAATACGTTAATTTTGCTCATTTCTAAGCTGCCTATGCGGCAGTGAACGGCGAACGTGATCCCCGTTCGCCGACCTTTCG # Right flank : CGGCCTCAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGCTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //