Array 1 649988-650736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021490.1 Francisella tularensis subsp. novicida strain TCH2015 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 649988 36 100.0 27 .................................... AAGATGATAGTAAGGCACAGTATTTCA 650051 36 100.0 29 .................................... TTATATACGCATTGCTTTAATACATGGTA 650116 36 100.0 30 .................................... TGTTCTATAATAAAACTTTTAATCTTTTAT 650182 36 100.0 28 .................................... TTAATTCTATAGGTAAAAATGAGTTCTT 650246 36 100.0 28 .................................... GCGGTGTAAGGTTCGTCAAGCTTATCGG 650310 36 100.0 30 .................................... GGCGCTAGTAAGTGGGAGCTACACTACTAG 650376 36 100.0 30 .................................... CAAAGTGATTATTGTTCAATGAATGTTGAG 650442 36 100.0 30 .................................... AAGGCTATATTCGTACAACAGAATTAACAT 650508 36 100.0 27 .................................... TAGCACCTGTTTAACGAACTCTAAATC 650571 36 100.0 27 .................................... AAAACCTTGCAAAATCAGAGCTTGAGA 650634 36 100.0 28 .................................... ATGAAATACTCTTGTCCTTTGGGTGTGA 650698 35 91.7 0 ......................G.-.....T..... | A,A,TT [650727,650729,650733] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.3 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTCTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATCACTATGTGCCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGAATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAAAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1368688-1369803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021490.1 Francisella tularensis subsp. novicida strain TCH2015 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1368688 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1368695] 1368759 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1368784] 1368967 37 94.6 34 ........C...A........................ ATCATGGGACATATGGCGGTAGCACAGTCAATAG 1369038 37 97.3 34 ............A........................ TCAATGCTGTACTAGAAACTACATACAAACTATA 1369109 37 100.0 37 ..................................... TATTTGAAGACCAAACAAGATTTAAGGTTGTTGTTTG 1369183 37 100.0 36 ..................................... TATAGAAAAGTTAAGACCAACCATATCTGATACACG 1369256 37 100.0 36 ..................................... AGAGAGCGATTATGGCGAGAATTTTTACTTTTATTC 1369329 37 100.0 33 ..................................... TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC 1369399 37 100.0 35 ..................................... AACTATAAACTTGATTACTTATCAACAGTATTGCT 1369471 37 100.0 36 ..................................... CACTCAAAGGCTTTGCGAATGGAAACCGCGAGAAAA 1369544 37 100.0 38 ..................................... ATATCAACAGTAACTTTTGCACTATCAAACATATTTTC 1369619 37 100.0 36 ..................................... TACTAGAGATAAAGTCAATGTTACTTTCACTACTGT 1369692 37 100.0 38 ..................................... TGCTTATCTAAGACCACAAACACTATTCGGAACAAAAA 1369767 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 14 37 96.3 46 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAGCTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGTTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAACAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGTTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGTTGCAGATGAATCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTTTTGATTAACTCATCAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //