Array 1 49189-48062 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRA01000023.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49188 29 100.0 32 ............................. AGCACGCGTGTAGACTAAAGTACCAACGCCGT 49127 29 100.0 32 ............................. GTTCGCAGACTTAGAACCTAAGTTGCCGTTTC 49066 29 96.6 32 ............................C AATTTAAAAGAATGTTTGTTCGATGATTTAAC 49005 29 96.6 33 ............................C TATAGATTTGCTCTTCATGAACTATGTCTGTTA 48943 29 96.6 32 ............................C AAGCCAGCAGAAAAGGCAGATAGCACTCAAGG 48882 29 100.0 32 ............................. AGTGACATATGTCCGTCTAACAGGACTCATCT 48821 29 100.0 32 ............................. AAACATGTCATGGAATGAACCATTTTGAATGT 48760 29 100.0 32 ............................. TTAAGTGATAAGAAAGATCAAGAAATTGATCA 48699 29 96.6 32 ............................C ACATAACCCGAGCCAAAACGCAAAAGAAAACT 48638 29 100.0 32 ............................. ATCTTTTACAAGGCGGAGATTTGAGCAACACT 48577 29 100.0 32 ............................. GATTGCACCTATGGCAGTGATTGCGGCTGTTG 48516 29 96.6 32 ............................C ATCATTTAGAGCCATGCTTTAAATCCTCCTTT 48455 29 100.0 32 ............................. TGTATCAATGCTAATAAGAACGTTTTACCTGG 48394 29 100.0 32 ............................. TGTCATCACATCTGTAGATTTAAAAAGATTGG 48333 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 48272 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 48211 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 48150 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 48089 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.5 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1745-312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRA01000042.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1744 29 96.6 32 ............................C ATGTTTGGCCATATATGGTCGACCCAGATGAT 1683 29 96.6 32 ............................C TTGTTCAGGTTGACGGTCATACAAGGTAGTTG 1622 29 100.0 32 ............................. AAAAGGCTTTGTCATTATCATAGCACCAATAT 1561 29 96.6 32 ............................C TTATCAGTAAAAAGATAACCGTGATAAGTAAC 1500 29 100.0 32 ............................. GTTCCATTAGTGTTAGAGTAAACACAAATCAT 1439 29 100.0 32 ............................. GGTAGGAAGTAATCCCACCATTAAATCATCAT 1378 29 96.6 32 ............................C TTGATCTCTGCGCACAAGTTCACGCTTGCAGT 1317 29 96.6 32 ............................C GCCTGCTGCTCGTGCCAGCTTAGCAATTCACA 1256 29 100.0 32 ............................. ATCGATGTTCATTTTATGCTTCCAATTCAAAT 1195 29 100.0 32 ............................. TAAATTCTAATCCTTGTTAGTTGTCTTATATA 1134 29 100.0 32 ............................. CACCTAAATCAATACCATCGCCTTCTGCGCCT 1073 29 100.0 32 ............................. ATCGGTGCTGTTGCCGTGGTGTCTAACGCTAA 1012 29 100.0 32 ............................. ATAGCGTCCCAAAAGCCATAAGACAAAAGGCT 951 29 96.6 32 ............................C ATGCTTAAGGGTTAATTATGTACGAATTAAGA 890 29 100.0 32 ............................. AATCTGCTACTTTTGCTAAATCTTTTCCTTTA 829 29 96.6 32 ............................C ATCGGTGACGATGACACGCAATTACCATTATT 768 29 96.6 32 ............................C ACAAGAAGAACAACAAGAAATTGAAAACTTAT 707 29 100.0 32 ............................. AGCTAAATCTCTAAAACTAGTTAATTCTTCAG 646 29 96.6 32 ............................C AAAATTGCAAAAACTAGAAAGAAAAGTGAAGA 585 29 100.0 32 ............................. ATTAATGTTGTTGCTTATACTCATACAGTTGA 524 29 100.0 32 ............................. GAAGAGAAGTGCTGCTAACCGTAATTATTGCT 463 29 100.0 32 ............................. TAATGGCGTTGGTAAATAATCTTTGTAGTAGG 402 29 96.6 32 ............................C AATCTAGTTTATGATACAATAAACACAGATAT 341 29 86.2 0 ...........A.....T......T.A.. | A [320] ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCAATCACCAAAAGAGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGCCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTGAAACTGTCAAATCTTTT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2391-1628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRA01000016.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2390 29 100.0 32 ............................. GTTGGCAATATGTGTAGCATTAAGCGCACCTA 2329 29 100.0 32 ............................. AATTTAAACGTGCTAGAAATGAATAATTTTAA 2268 29 100.0 32 ............................. ATGCTGACTACCAGCTTTGAACATAGAACCAA 2207 29 96.6 32 ............................C TGTCCGAAATAGCTTTAAAGTTAGCATTCGCT 2146 29 100.0 32 ............................. ATTAGCGATATGAGTTGCATTTAATGCACCTA 2085 29 96.6 32 ............................C TTCACTTTCTTGCAAAAACTTTTTAACTAGTT 2024 29 100.0 33 ............................. GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 1962 29 96.6 33 ............A................ GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 1900 29 96.6 32 ............A................ TAAAATAATTAAGGAGGGAACTCCAAATATCG 1839 29 93.1 32 ............A...............C AATTTCTTCCTTCGACATGTCCTTAAGAGCAT 1778 29 89.7 32 ...........ACA............... GACAGCTCTGCTGTAGTGATCGAATCAGACAA 1717 29 86.2 31 .....T.....ACA............... CCGACGGGGTACCCCGCGGCTGTCCATCATC 1657 29 72.4 0 ...........ACA.........A.ATAG | C [1632] ========== ====== ====== ====== ============================= ================================= ================== 13 29 94.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 236-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRA01000008.1 Lactobacillus crispatus strain UMNLC10 crispatus10A5S23116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235 29 100.0 32 ............................. TGTCCAAACCTTCTACAATTCGTTGTATTTTG 174 29 100.0 32 ............................. GGCTTATGGCATCAGTCATGGCTTTTGACGTT 113 29 96.6 32 ............................T TCTTCGATTTGTATAAATATAGAAATTTGTCG 52 28 72.4 0 .........C...A......A.C-..TTT | T [34] ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : ATATTTGAATGATAAAAACCTTGAGCAATCTATCTGGATTCTTTTAGATAATTTAAATTTATTAAAATTACTTTTAGTTGCTGAAACTGATTATAGTCATTTTTTTATAAAGTTGCGAAAGTTAAATGAAAAATTTAAAGGTATTTCTAAACCATATCATCATATGTCTAAAAAAACACATACTGTTAATCAAATGAGAAGAGCAATTAATGCTGTGATTGATAATATAGTTGGTGCAAACAATATGAAACTGAAGGATTTGCATGATGATCAGATTATTCAGATATATGTTGAAGCCAGTGCGCTAAATCAAAATTGGTTAAAGCTTACTGGTAACGAGGGGGTAAGGCATCGAAAACGAAAAAAATCAGTCGGAGTTTATTCAATTGAGTTTGGATATTTAGACATTGCTTACATGTGTTGAAAAATGGATCTTCTTAAAAGTAATGAAAAATGTTATGATTTGAATTGAGGATCATTGATATAATGGGATTTGTTTA # Right flank : TAAACTAAGTGTATAATTTTTTGC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //