Array 1 69315-68928 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGPI01000016.1 Pseudoalteromonas sp. CO348 NODE_8_length_219423_cov_61.386497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 69314 35 100.0 34 ................................... ATCGTAGCGATTCTACTTAAATGAATCTCATCTC 69245 35 100.0 35 ................................... TAATAAATGGTCTTACTGAGTTAAAATCATCTTTC 69175 35 100.0 35 ................................... TATATACCTGACTTTTCATAATTAATCCTTTTTAA 69105 35 100.0 35 ................................... CCTTGGGCTGAATGCTTTAAGTAGGACACAATTTT 69035 35 100.0 37 ................................... TTACTGTAACTTACAAAGTAACAAAAGCTACCCTTTG 68963 35 88.6 0 .............................G..GGT | T [68930] ========== ====== ====== ====== =================================== ===================================== ================== 6 35 98.1 35 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : GTCGGTTGCACTTTTGAGTAAGTCTGGCTGTGAGTCTGGTAGCAGCTCGTTAAGATAGCCGGTGATTGCTTCTTGATTTAACCCCATCGTTTACTGACTCCTTTCGTAATGTTAATTGAGTTAGCAGAATAGGTAAGTTCTTGAGTAAGGTAAAGTGATATTCACAAAAGCTAATCACGCAAACAAACCTCACTTATTTTAAGTATAATTTTTAGGTATTTTTAATATAAAGCAGTAGGTTATAAGTAAAAGGTAATACGGTTCTGGATGAACCTCTTTCCTGATATAGGGATTTTTTAAAAATACTATAACTATCATACTGTTAGCCTAAAAACCCACCCTTAGGTTCATCCATTTCAATTAAATCAATTAGTTAGCTTAACTTTTTACTTCCAAAATGGCTGTTTTTTGCTAATATCAACACAGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCGTGTCAGTCAAGGGCTACAGAAGGTAGG # Right flank : TAGGTGCATTGTTTATCGCTACCTAGAAATGATGATTGGTGTTTAAGACGTTACACAGCGTTAAAAAGCCCTCGTGAGCACCCTGGATTAACAATAAAGCAAGACCTACAGTATAAACCTGTGAAGCTTGTTATTTGCAGGTCTTGATTTATCCGAGCAAAAAGATTTCCGTGGCATAGGGTGCGGAATTACAACCTAAAAGATCGCGGGGTGAACCCGCTCCTACCTGATATGGGTTAGTGTAATAACAACGCTATGCTTTTGGTGCGACGAGGGGTAGGTCAAACTGCACCATTAAGCCACCTTTTTTGCGATTAAATAGCTTAAGTTGTCCACCGTGGGCAATGGCGACTTCATTACAAATACTCAATCCTACCCCTGTGCCACTGGGTTTAGTAGAAAAGAATGGTAGTACTGCGTTTGCTAGCTTTTCTTCTTCCATTCCTACACCTCTATCAACAACCACGACTATCAGACGTTGATAATCAACCAGCAACTTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 72408-71807 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGPI01000016.1 Pseudoalteromonas sp. CO348 NODE_8_length_219423_cov_61.386497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 72407 35 100.0 36 ................................... AATCACGATTTAAAAAAATATATGTCGAGTGGACAT 72336 35 100.0 36 ................................... ACTAGAATCAGTACCTCTTTTGGTTCGTCTACGTGT 72265 35 100.0 36 ................................... TTAGAGAAAGATAATGATTCATCAAGCTGACTTTCT 72194 35 100.0 34 ................................... TGGATTACCTTTAGATATATTTCTCAATACTTCG 72125 35 100.0 35 ................................... CTGTTGAGAAGGCTGTATCCGTTGCTTGAATACCT 72055 35 100.0 36 ................................... TTATAAATCCCCCTAAGGATGGATGGTTGTGAAAAA 71984 35 100.0 37 ................................... AATATAAACTACGTGAGATTGAGAACTTGTAAACATG 71912 35 97.1 36 ...................C............... ATCATACAGCCCAATAGGGAGTACTTTCACCAACTG 71841 34 91.4 0 .....................A........-..T. | C [71814] ========== ====== ====== ====== =================================== ===================================== ================== 9 35 98.7 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : ATGGTTATGATGGCACAGCAAACATTCGCTTTTACTATTTAAACCACACTACCAGAACAAAATCCATGGACCTTGAAGGAAAGGCCGTTGCCTGCTTTCCTAGCGCACAAATTTTTTAACTTACTTTGAGAAACCCAATTCTTAACAAAGTATGTTCACGATTAAAAATCTTGTACCTTTTATTTTGGGGCGGAGCTTTTATCACTTTTTTTGAGGAACTTATATTAAGAAACAATGGGTTATAATCAAAAGTTGATACCATTCTGGATGAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTAAAAATATCATATAGTTAACCTAAAAAGCAGTTGCTAGGTTCATCCAATTCAATTAAATCAATTAGTTAGCTTAAATTTTTGCTTCCAAAACGGCTGTTTTTTGCTAGAATCAATACTGTTTCTTGGTTGACACTGGAGGTTCATCCAATTTGCCGCTACAGGCCGTGTCAGTCAAGGGCTACAGAAGGTAGG # Right flank : AAAAGCGAGCGAGGTGAACCCGCTCCTACTTGAGGAGCGGTTTTGGCAAAACGAAAGGTAGTTTTTACAGGTTGCTAAGCAGCTATGTTAGTGTGTGATTGACTAAAACCACATTTTATGACCCCAGCCAAATACGCAAACAAGCCCAAATATTAGTAAAGTAAGTGACAAGCGGCTGCGCTTAGGTTGGCTTTGTTTTTGGTGTGTGACACTGGCTTTTCGCGCAATTTGTTTGTTAATACTTAGATTTGAATAATAGACAAAAGCTGAGGTCGTGAGCATCACCAAACCAATAAATACGGCATGCCAATCACTTGAGAAAAAACGAATTGGCTCACCATAATATAGCGTGGTCATTTCTACAAAGTTAGTGCCAAACACGCTGGCAATAAAAATAAGTGCAGTGCCTAACGTGGCGATATTTTTTATTTTATTTTGATGTTGCTGTTGTTGTTCCCTGAGCTGTTTGGCTTCTTGCTCCATTTTTGCGTTATGTGTAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 86392-85723 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGPI01000016.1 Pseudoalteromonas sp. CO348 NODE_8_length_219423_cov_61.386497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 86391 35 100.0 35 ................................... TATCCTCTCTTGCTTGTTTGAGAATAACTACCAAT 86321 35 100.0 34 ................................... TTATAACTTTGAGTGAAAATTTCATAAAAGGTCT 86252 35 100.0 37 ................................... CCTTAGATACGCAGGAATGGAAACTTCTTCCCAGCGC 86180 35 100.0 37 ................................... CTTCATTTTTTTATTAACGGGTTCCCATAACTTGTCT 86108 35 100.0 34 ................................... TTATCTACAAGTAACTTACGTTCTGTGAATACTG 86039 35 100.0 36 ................................... ACTTTTTATTTGTCAGCAAATTATATCGTCTGAAAA 85968 35 100.0 35 ................................... AATAGCTAAGAAGCCCCCAAACCCCTAAAATTACT 85898 35 100.0 35 ................................... GATTCACCTCTGCATCAGTGAGATAACCATAGTGT 85828 35 100.0 35 ................................... TGTGTGCCAAGTTGGTATGAATAGAAAAATTTTAT 85758 35 77.1 0 ..................C..A...T....CCTTG | G [85725] ========== ====== ====== ====== =================================== ===================================== ================== 10 35 97.7 35 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : ACCAGAAATTGAGCTTTTAGGACAATATTTGCTTTAGCAGCGCAGCTGACTGGTAGGTCGTGATTTATCACGACAAAGGATTTCCGCCGACTAAGATACATCATTAAAACCAATAAGTTCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTAAAAAATTTTGTACCTTTTATTTTAGGGGGCGTTTTTATAACATTTTTTTAGTGATTTATATTAAGAACCAATGGGTTATAACCAAAAGTTGATACCATTCTGGATGAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTAAAAATATCATATAGTTAACCTAAAAAGCGGTTGCTAGGTTCATCCAATTCAATTAAATCAATTAGTTAGCTTAACTTTTTACTTCCAAAATGACTGATTTTTGCTAAAATTCATAAAGTTTCTTGATTGACGCTGGAGGTTCATCCAATTTGCCGCTACAGGCCTTGTCAGTCAAGGGCTGCAGAAGGTAGG # Right flank : AAAAGCTAGCGGGTTAGTTCGCGCTACTCAATAGCGCAGTGAGCTTTTATCAGTGAATTTACGACTTTGAGCAAGTAGCAAAACAGTACACGGCCAACATTCAGTCAAAATCTCTTCCTCAATGCACGAATGGCACGTAAATATGAAATGAAAATAAAGTGAATTATTTGATTACAAAGCGTTTCAAATATATATAAATTACTTTATGCTGATAAATAAGGATCGCTTCATCACACAAGGACACCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGCCTGCACGATATGGTTGCCGCCAACGCTTTACTTGCTAAGACTATTCGCTACGACCTGGTTGTAGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGACAACAACTCAGACGCACTCGCTGAACTTGGGATCCTAAGCCGCGATGGTGGTCATTTTTATGCGCTATTTTCAAGTTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 17293-19276 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGPI01000040.1 Pseudoalteromonas sp. CO348 NODE_2_length_401822_cov_70.165380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17293 29 100.0 32 ............................. GATTGGTGAACACGCTCAACGAGCTGTTTGCC 17354 29 100.0 32 ............................. AGTTAGCATCATAAGCAATCGAGCCGACGGGC 17415 29 100.0 32 ............................. AGGTCTATCACAAAAAAATCCTTCTGATGAGT 17476 29 100.0 33 ............................. TGACCACAACCACCGGAAAGGCAAACATAGGAC 17538 29 100.0 33 ............................. CACTTCGTTACCTTCTGCATCTTGTGTGGTTTC 17600 29 100.0 32 ............................. TAACATGTCTAACTTTACTGTTGTGAATTTGA 17661 29 100.0 33 ............................. TATAGGGTTCACATGTGAACCCTGTCAACATGA 17723 29 100.0 32 ............................. GATAGAGGCTGAGCTGCTGGAAGTTGGCATTG 17784 29 100.0 32 ............................. TGTGGGCAGCGATGTAGCACTGGACTTGAGCC 17845 29 100.0 32 ............................. CCTGGGAAAAACACACATTTTGCAATCATTAA 17906 29 100.0 32 ............................. TCTTAGGGCATTTTGAGCAAATGCTTGTACGT 17967 29 100.0 32 ............................. GGATCTGGAATCTATGCAAACAACGTAGAATA 18028 29 100.0 32 ............................. ACTCAGGATGCTGGTGGAATGGCCGCTTTTTT 18089 29 100.0 32 ............................. ATACGCAGAAATTTATACTGCAGAAGAAGAAC 18150 29 100.0 32 ............................. CAGAACGTTCAAACCGTTGGTTTGTCATCTGA 18211 29 100.0 32 ............................. GTTGATGAGTCACAGTCAATGAATCTACCCAC 18272 29 100.0 32 ............................. CGAGCTCTTCATGCTCTTTATAGCAAAGCTTT 18333 29 100.0 32 ............................. TTGAATCTATGCCGCTTTGTTTATTTGTTAGT 18394 29 100.0 32 ............................. AATTTTAGCGTACGAGACTTAGCGGAGTTTTT 18455 29 100.0 32 ............................. CGAAACAATCACACGAGCCAATTTCTCATAAA 18516 29 100.0 32 ............................. AGTGTGACCCAACGCCGCCATGCGACCCGTCA 18577 29 100.0 32 ............................. ATACTTTTTTACTTAAATCTTTCAAATAAGGT 18638 29 100.0 32 ............................. TTAATATACCCACCCCGGCTAAGATAGCGGCA 18699 29 100.0 32 ............................. GTCACCCCAACGGCCAACGCCGAACGATTCCA 18760 29 100.0 32 ............................. CATAAAACACACACTCAATGTTAAAAAAGGAA 18821 29 100.0 32 ............................. TACCAAATAGGACAGTGGTGACCATTAACGAG 18882 29 100.0 32 ............................. GATAATCTCCTTTCTTTAAACTTAAGGAGTAA 18943 29 100.0 32 ............................. CCAACGAAACTAATAAACTTGCCTGTGACTGA 19004 29 82.8 32 ..........T.TGGA............. GTCTAGGCGTTTTTGATACACACCAATTGAAC 19065 29 82.8 32 ..........T.CGGA............. GCCTTTAAACTGCTAACGGGGTTTTTTAGCGC 19126 29 86.2 32 ..........T.CG.A............. TATCAATGATCGATTTCGCACTAAATATATTC 19187 29 86.2 32 ..........T.CG.A............. AGCGAAACGCCTGATTTATTACTTAGCGATTT 19248 29 82.8 0 ..........T.CG.A............T | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.6 32 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : AAGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGTGAAGCAATCGGGTTCGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGACTTTATCTTGAAGACTTATATGTGTCACAAGACAAACGCGGTGTTGGCGCAGGTAAAGGGATCATGAAGTACCTCGCAAGACTTGCACTACAAAATGACTGCGGTCGCTTTGAGTGGGTGGTGCTTGACTGGAATAAACCATCAATCGATTTTTATGAAAGTATTGGTGCTAAAGCACAAAACGAATGGATTATTTATCGCCTATCAGGGCAAGAGCTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTGGCCTGTTGGCTATACATTATTTGAAGAGAAACCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAACATTGTAAGTGTGATTTTTGTTAATAAAAACAATACTATATATTTAGA # Right flank : TGAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGCCTTTCGCCCTTCGGGTCAGCTGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTATTTCGCCCTCGTACACACGGGGCTAACCAATAGGACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATCTCTCTGTCAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGAGATATTGAAGCGGTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30108-32518 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGPI01000040.1 Pseudoalteromonas sp. CO348 NODE_2_length_401822_cov_70.165380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 30108 29 100.0 32 ............................. CGTGTTAATGACAAAATCCTTAATGTAACGGA 30169 29 100.0 32 ............................. TAGTCGGGGCGCTGGTTGCCATAGCCAGCGCA 30230 29 100.0 32 ............................. TATTCACCAAATCTTGGGCTACTTTTGTGCTC 30291 29 100.0 32 ............................. TGACACGGGGCATCAACTCTGGCGCAATTGGT 30352 29 100.0 32 ............................. CAAACAGAACAACGATCTCAATACCAATCGAA 30413 29 100.0 32 ............................. GCCTGCTATATGGTTTTGAGTTTTCTGATAAT 30474 29 100.0 32 ............................. TCCGATATTTTATACTCGCTAACACCTTCGTT 30535 29 100.0 32 ............................. ACTAAAAATTTCGTTGGTGTAGCCTTAGCAGG 30596 29 100.0 33 ............................. TACCACGGCCTCAGCAATCTAGTTGCGCCATAC 30658 29 100.0 32 ............................. CACACAGCTACGCGCTGAGACCATTCAGGCGC 30719 29 100.0 32 ............................. AGAGTGTCTGGTCTGGACTTAAAGATTTGTCC 30780 29 100.0 32 ............................. GGCTGACATAACCAGCATGATGAGCGGCGGCG 30841 29 100.0 32 ............................. GCAATAGAAGAATCAACAATAAGCTCTATAAA 30902 29 100.0 32 ............................. ATGGTTAAAATTAAAAAGTATGGACAGTTTAG 30963 29 96.6 32 ............................A TATCCCCTAGGCCAGAAATTCCTCTGGTTTTG 31024 29 100.0 32 ............................. TATCCCCTAGGCCAGAAATTCCTCTGGTTTTG 31085 29 100.0 32 ............................. AGCGTAGCCCAGTAACAGGCATCGCATGGCCA 31146 29 100.0 32 ............................. CCATTTGTCAGAGTGTTAGTGGGGTAGTGTAT 31207 29 100.0 32 ............................. ATTTCACTATACAATATGAGGAATAGCTATGT 31268 29 100.0 32 ............................. TCATTTCTAACATAGTGGACCATATACCCTTT 31329 29 100.0 32 ............................. TCACTCATCAAACAGGCCCTCCACGCTGTATT 31390 29 100.0 32 ............................. TCATGCTTGGTTTAGGTACTGGCTTACCGGCT 31451 29 100.0 32 ............................. GATGTTTTTATTTGGATTTTTGAGCAATTCAT 31512 29 100.0 32 ............................. GTTACGCTTTGGGTTCCCTGTCAATCAGAGGT 31573 29 100.0 32 ............................. AATACTAATCAACAAAGGGTTGGAAACGATCA 31634 29 100.0 32 ............................. TCGTTCAAACTCTCTGCTGTCCACACCTCGTG 31695 29 100.0 32 ............................. CGTCGAAAAATTGTTACTAACATCCCTCTAAA 31756 29 100.0 72 ............................. ATACCTAGTCCAAATTTAAATTTCCGCTGAAAGTGTTCCCCGTACGCATTCACTATCAAATCCCTGACATTG 31857 29 100.0 32 ............................. CGTTCACCAAATCATCGCTGATACATGCATTT C [31866] 31919 29 100.0 32 ............................. TTAAGTACGCTGTGCCCTCTGGATGGGATATG 31980 29 100.0 32 ............................. GTTGCTTGATTTAGTTGAGCAGCATAGCAATA 32041 29 96.6 32 .......T..................... CAATGAATGCTTCAGTGTGTGATATAAGAAGC 32102 29 100.0 32 ............................. GGGCACGCCCCTTAATAATCCCCTTCTTTTCT 32163 29 100.0 32 ............................. ATGTTATCGCATCGTTCATTGATAAAGTAACA 32224 29 100.0 32 ............................. AACGACGGGGACAAGCATCGAGCTGATTGTTG 32285 29 96.6 176 ............................T GAGTTTTTCAGGTCTGAATCATGTGCTGTAAATCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTCAGCAGGCTGCGAAACGATGATGACTCCAGACTTCCTGCCTTTCGCCCTTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTAC 32490 29 75.9 0 T.CGC.........A.....A.....T.. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 37 29 99.1 37 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : TCCATTGGTGACGAAGGTCATCGCAGCGGAGGACCACTATGAGTATGTGCATGGTTGTTACTGAGGCAGTGCCACCTAGGTTAAGAGGTCGCTTGGCAGTGTGGCTACTGGAAATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCAGTCGATTTTCAGGGCCTGAGACTGGTGAAGTACACGCCCAGAGTAGATGATAGCCAGGGGGCAGATTAGCGAACGCCCCACTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGAGATTAAGATTTTTACCTCATAATGAGAGGTGCTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GGAGTTATTCAGGTCTGGATCATGTGCTGGAATTTATTTATGAAGCTGTTAACCGGTGGCGACTTTGGACTTGCTCATACACGCTCCGGATTAAGTGATAGCCACCCTTGTTCGCCGGTTACTTATCTACATGGCCTAAATCACGCTCAGGATCTAATAAATCTCTCACTCTTCTTTTGAGCACCTTGGCTTCTGGAAAGCCATCATCTGCTTTGCGGCACCAAATTAACGTATCGTTGTAGTAAATTTCGAATACGCCTTTACTTGCAGGCGCGAGCGCAACTTGTTTTAAATCGTCGGAGAAAGTTGAAAGCAGCTCTTGTGCAAGCCAAGAAGCTCGCAGCATCCATTGGCAAAGCACGCAGTAATGAATTGTAATGATCGGTTTTTGCATGAATTTACATTAACTTGAAGATTGTGGTTGGATTTTAGCACTGTGATTTATGGTGTGGCTAGTATGAAAAAAACGGGGGTTACCCCCCGAAATTATCCAGGGAGAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //