Array 1 8289-5407 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQGS01000002.1 Listeria monocytogenes strain CDPHFDLB-FM17-00161 FM17-00161_Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 8288 36 100.0 31 .................................... TTATGGGCTTGGCAGCGGCGATGAGTAGTGT 8221 36 100.0 30 .................................... TTATGCAGATTTAAGACGTGCAGATTTAAG 8155 36 100.0 30 .................................... TTCATCTTCTGTAACGTCTTTTCGTTCTCT 8089 36 100.0 32 .................................... TCAGACGGCGTTATGGGCGCATCTATGATATC 8021 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 7955 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 7889 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 7823 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7757 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7691 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7625 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7559 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7493 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7427 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7361 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7295 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7229 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7163 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7097 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7031 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 6964 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6898 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6832 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6766 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6700 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6634 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6568 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6502 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6436 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6370 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6304 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6238 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6172 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6106 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6040 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5974 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5908 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5842 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5776 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5710 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5643 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5577 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5511 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5445 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5410,5413,5418] ========== ====== ====== ====== ==================================== ================================ ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49628-50956 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQGS01000001.1 Listeria monocytogenes strain CDPHFDLB-FM17-00161 FM17-00161_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49628 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49694 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49759 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49823 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49889 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49901] 49957 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50022 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50087 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50153 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50217 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50282 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50347 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50412 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50475 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50538 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50604 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50667 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50732 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50798 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50863 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50927 29 93.1 0 .......................A....C | C [50950] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //