Array 1 55-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXM01000139.1 Lysinibacillus boronitolerans F1182 trimmed_contig_139, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 55 29 100.0 35 ............................. CGCTAGGGTTAAAAGTAAAAGACCATAGCGCGAAA 119 29 100.0 35 ............................. TTTAGCAGTTATATGTCTTTATTCAGAGATCTACC 183 29 100.0 35 ............................. TCCGTGTCGATATAGTCACGCGTACCGCCTAAATT 247 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 100.0 35 ATTTATATTCCACATAGTTAATGTAAAAC # Left flank : CATAGTTAATGTAAAACGCAAGAAGCATCCTAATGTGATGATCATTACTAACTAA # Right flank : CCCACCTTAAGCATAATCAAAAAACCCTTATTTTTCAACGCTTTAACGGCTTGTAATTTGCGACAAATATGATTATTTGCAGTCAATCGGTAGTCCAGAAATTTGCCTTTGCAATCAAAGTGCCCTCAAAGCTAGGTATGATATGCCTGGAAGGAATATAATGTTGTAAAATGATTCACTGCAATTCTACTAAAAGAGAGTTTGAATACAATCGATACTCACTTTTCTAGTCTTTACTAATAGAATAGATGACTATAAAAACATGCTCTCAAAATCTTTCTCGACCCCATACACAGTTTTTTTCATATTTTTGGGATTGGCAATTCGGTAAACATAAATTGAATCAATATTCGGATTAGCCTTTGTTGCTAATTCAGCTAGGCATTGTTTTAAAAGTCCTTCCGTAATTTCTCCTTCAAATAAAGAATTTTGTGTCCACGTTAAATATTTTTTCAATACTTTATGGACTTTTCCCACCCGTTTCACATCCACATCATACG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATATTCCACATAGTTAATGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2625-3107 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXM01000210.1 Lysinibacillus boronitolerans F1182 trimmed_contig_210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2625 29 100.0 36 ............................. TTCGGACAACTCAAGTACGGCGTAGGACGGGGCATA 2690 29 100.0 35 ............................. CTTGCAGATGGTAGCTCCCAGGAAAGATCAACACG 2754 29 96.6 37 ..............T.............. TTTTTTTTTTGAAAACAACCTGACCTGGTGCATCCCC 2820 29 100.0 36 ............................. GTATTTGTACTAGATTCGTAGTTTGATGCGCCCTGT 2885 29 100.0 37 ............................. GACGATTGGCGAGATAAGCAGCAAAATGAAATTACGG 2951 29 100.0 36 ............................. CTAGTTGTTGTTGCTCCAACTTATTGTCAGTTTGAA 3016 29 100.0 34 ............................. CTCGTAACACTTGATTAGCTAGAATTTGATCTTC 3079 28 96.6 0 ....................-........ | T [3105] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.2 36 GTTTTTCATTAACTAAGTGGAATTTAAAT # Left flank : TTCGAGTAGGTTTTTTTATTTTAGTAATTCTAACTAAACTTCATTTAATTTCCTTTACCCTCTTCACTACATCCAATCAATAACCGACAGTAACTAGTAGCAACCAAGAGCCTATATTCCTCCCCAAGCATGAACTTTACATTGAAAGTGTTAAAGCACTAAATATACGCCGATTGCACATGATGAGGATTTAACACATGTAAGGCAAATTTATAAAGCATGAAAATATTTAACATAGATATAAAACTCACTATGAGAATGTGCTCGTCATGAACTATTACTTGAATGAAATGGATTTTCCCCTCTTTATAAAAAATTGCAGTGAATCATTTTACAACATTAAATCTCTTCAATGCTTACCATGCCTAGATTGAGGCACTTGAATAACAAAGGGAAATTTTTGAACTACAGATTGACTGCAAAAAAATGATATTAGTCTCAAAGTACAACCTGATATAGCGTTGAAAAATAAGTTTTTTTTTGATTATGCTTAAGGGGGG # Right flank : TAAGTAAATAGGTTAGGAAGTTATTGTCCAACTGAAGGCATTTTTATTAGCAAGTGGCATTTAAACCCTTGCAATCTATTATTCTCTAAAAAAACCAACAACAACCGAATTCCCTCGGTCATTGCTGGTTCTTTTCATTTACATTATTTCTTGCGTTTCACAAATACAATAACAAAAATAGCGGCTAGGGCTGCTAGGATGGCGATCATCCATACTGTGTTTGAGTTGGATGCTGTGTCATCTGCTGCGGCTGCTTGTTGCTCTTCTCTTGGTGTAGCGTTCGAAGACTCCATTTCTTTGGCATCCTCTTTCACCACTTGTGCAGTGCTAATTTGCACATATTGTAGTGTTGCTTCATTCGAGGCAGATGCTTCATGCTCGTGACTTGCGTCGTGACCTTCTGCATGATCGCCGTGAGTTTCCTCTTGCCCACCGTCATGACCATGATGGTGATCTGCTGCTGTTGTGTAAATAGAGCGTTCTAGTTGTTGCCCTACCCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTAACTAAGTGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1499-863 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXM01000285.1 Lysinibacillus boronitolerans F1182 trimmed_contig_285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================== ================== 1498 28 96.4 37 ...............T............ CCGCTTTCATGTGTTAATTCCAGACGAACATCTTCAT 1433 28 96.4 36 ...............T............ CATGGATACATCTAAAATGTCTATGACAACTACACA 1369 28 96.4 35 ...............T............ CGGATTACGATTAGCACCTTTAAGCTTTTCTTCTA 1306 28 100.0 37 ............................ TTATGGTGAAACGCCTTTTACATCGATGCAGTTACTT 1241 28 100.0 62 ............................ TTAAATAGTGTTCTTCATCGGACATTGCCACCTGAGCGTTTTACATTAACTAAGTGGTCGAA 1151 28 100.0 37 ............................ TCTCATAAACAAACTACTTGTTGCTCACTTTCATCCT 1086 28 96.4 37 .................G.......... TTAATTTGCTTGTCAGTATCATCCTTCATGCCTTTTA 1021 28 100.0 37 ............................ TTCTTCCCATATCTACAGGCACAGCATTCCCGATCTG 956 28 100.0 38 ............................ TTTTTGGGGTCCTGCTGTAGATGCTGGCAAGGATTATT 890 28 96.4 0 ......T..................... | ========== ====== ====== ====== ============================ ============================================================== ================== 10 28 98.2 40 GTTTTACATTAACTAAGTGGAATATAAA # Left flank : ACTATGTGGAATATAAACGAATAAAGCCATACAATGCTTCTGTACTCCACCCT # Right flank : TAGACTCTAAAACCCCGATACCAACCAAAAAAACGAACAGCGTACCCTTAACCGCTGTTCATTTTTATTGCCTAAAACCATGCCACTTTCATGAAACCGTCAAACATTCCAAATAAACGTCTGCATATTCCAGCATTTTTACACAAAATTGAATAAGCACAAGCATGTTCGGTATATAAATAGGGTACGAACATTTTTTTTGTTAGGAGTGTGTAAATGGCTGTACTTGTGGTGAAGAGGAGTATTATGCATCGTTATCAAAGTATTGGGCAGGCGATTGAAGAGGCGGCGCCTGGGGATATGATTGAAATTCGGGATGGGATTTATGAGGAAAGCTTGGATATTGCCAAGCGGCTGACGTTGTATGGGGTTGGCAATGTGACCATCAAGGGTGGCGTTTTTATTCGTTATCAAACACATGTGGCGATGCGTAATTTACGGTTCCGGCAAGGTCAGGGGCTGTATGTGAAAGGTGATTTACAGCTAGAGAATTGTGTCAT # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACATTAACTAAGTGGAATATAAA # Alternate repeat : GTTTTACATTAACTATGTGGAATATAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //