Array 1 178602-179606 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAO01000003.1 Apilactobacillus timberlakei strain HV_26 scaffold_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178602 29 100.0 32 ............................. CATAATATCGAACGCCTAGAAATCCAGCCCAT 178663 29 100.0 32 ............................. ATGTCTACCATTTGAATATCTATACCATAATC 178724 29 100.0 32 ............................. TGGAAGATGCAGTAGCAGGTTTTGATTTAGTC 178785 29 100.0 32 ............................. CTCCATGAATGGCACCGGACACAATACCAGGT 178846 29 100.0 32 ............................. TTCCTTATAGTAGGCTGTTGAATACCACTCAT 178907 29 100.0 32 ............................. TTCGCCGTGGTCAAAAGCAATTGTAGCTCCCC 178968 29 100.0 32 ............................. CTATCTATATAGCCATTAATCTTATTAACAAA 179029 29 100.0 32 ............................. AGGAATTTATTTACTCAAAAACAAGTTGAAGT 179090 29 100.0 32 ............................. TAGCTTCGTTGATTCTAAATTGTAGGTGTTTA 179151 29 96.6 32 G............................ ATAATGTGGAACTATGGTGTATGGTTAATCCT 179212 29 100.0 32 ............................. TTTATAACGGTTTTGCCAATGACCTAGATGAT 179273 29 100.0 32 ............................. TAGTTTAAATGAATCTGTATAAAAGAAAGGCA 179334 29 100.0 32 ............................. TTTAAATTATCTCCCCACATTTTAGAATTAGC 179395 29 100.0 32 ............................. TTGTGTCCACCTAATAGCATAGAATATTTCAT 179456 29 100.0 32 ............................. TCTTCTGCCATTTTAATGGCCTCCTTATATTT 179517 29 100.0 32 ............................. ATAAAGCCAATGGCTCAGCTATCATTGACACG 179578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 AGAATCACTCCCGCGTGTGCGGGCTAAAC # Left flank : CTAACTTAATTAAAAGTTTGGACCGGAATACCCTGAATAGAGCTATCCGTGAACGCATAATAGCGTGATAACTATTTTGGTCTATATTACTGGAACAGCTTAAATAAAAGAAAAATAAATAATAAAAAAGATAAAAATCTAAAAAGCTATAATGATCATAATAAGATAAAAGACTTGCTGATAAAGCAAGTCTTTTTATTTATCTTTCTTTTTGTTGGAATAATGAATACCTACGCAGCAACCAATAAAGATAACGATAAGTAATGTATATTGACCAACCGTATCCCAATCGACATCATCACCACCCAATAGGTTAAATAAGGCAATACAACATAAAATAAACAAGATAAATTTCCACATTCTAAATATTAAACCAATGCTATTGCCAAATAGTGATAGTAATTTTAAAAAGTCCATATGTATCCTCCGAGATTAATCTACTAATAATTATATTAGAATCAGCTTTTATTGGCAAAGTAAATATAATTATTTTTATGTAT # Right flank : CACTAAAAGAATGCTGAAATATCAAGCTTTTCTTTTTAACTTTCTACTAAATCCATTTACTTTCATTGCCAGTTTACACATTAATTTAGAATCCAATAAAGCTCGATGTGGAACCGTAGTATCAATTCCATAATCAAGCAAAGCAGTTTCTAATTTATAATTAGGTAAAAACATTTTTTCTTTTTTCACTAATGGTAAAAGATCAATATAATTATTCGTCAATGGTTTCAAATTATGTTTTTCTAAATTGTAATTCAAAAATTCAATGTCGAAATTAATATTATAACCAATTAAAATTTTATTTGAAATAAAAGATTGAAATTTTTCTAGTGCTGATGATAAATCTATTCCTTTATTTTCTAACATATCATTATCTATATTAGTAAGATTTATAATTTCTTCAGGCAAATTATATTTACTATTTATCAAATAATTAAATGATTTTTTATCACCATTAGACAAACTTAAAGCCCCAATTTCAATTATATGATTAGTTCTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGTGTGCGGGCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 191007-189761 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAO01000003.1 Apilactobacillus timberlakei strain HV_26 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191006 29 100.0 32 ............................. GATAAAATGATAATATGGAATGATTTTTAGAT 190945 29 96.6 32 ............................C AGAAATATTGATGCTTAAGTAGATTTGAATAT 190884 29 100.0 32 ............................. GCACATTCTGATGAGAAGATTAAGTTTTTCGA 190823 29 100.0 32 ............................. GGTGTGCTAGTGCCGTCTCTCCATGTAACATA 190762 29 100.0 32 ............................. AACGCCAACCCAGTAGTTAGCATTCAACCACC 190701 29 100.0 32 ............................. GAGTTGAGCTGGAATCAACCTGATGGGCTTAA 190640 29 100.0 32 ............................. TGACCGTAAGGAGCAGTTATAGAAGATGTAGT 190579 29 100.0 32 ............................. AATACCGAATTAGTAGCTCATAGTGATTATGT 190518 29 100.0 32 ............................. AGATATGCTTCAACTCTTCCCATTGCTCTATT 190457 29 100.0 32 ............................. CAGCGTGTGGACACAGTTCACGACCAGTTAGG 190396 29 100.0 32 ............................. ATATGATAACTATCAAGCACCATATCAAGTTT 190335 29 100.0 32 ............................. ACTGTTGCTTCACATGCTACGGATAAAAACAG 190274 29 100.0 32 ............................. AAGGAGAGATTTTAGTGTTAGGATCATTGGTA 190213 29 100.0 32 ............................. ATAAATAAGTTCTATTTTGCTGAACAATTTAT 190152 29 100.0 32 ............................. AGGCATTTATAAACTTCTCATGTCGTACATTT 190091 29 100.0 32 ............................. TCTTTAGCAGATAGGCTAGAGGCATGTTTTGG 190030 29 100.0 32 ............................. ACCGTTTTGATAAAGATAAATATAGAGTTGTA 189969 29 100.0 32 ............................. AACTGGACCATACCATTTGTCATACTGCTGTT 189908 29 93.1 29 ............TA............... TCCATTGATGCCAGCATTGCAGGAACAAG 189850 29 93.1 32 ............TA............... TCTAATTTTAGGAACGATTATACAGTAAGAGC 189789 28 93.1 0 ..........-....A............. | A [189776] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTATATCCCGCAAGCGCGGGAGTGATTCT # Left flank : ACGAATGCATCCGATCGTATAAGTAAGCATATGCTAAGCGTTCATCATTGTTTAAACGGTCATCGTTGCGTAGTTCAATATCAAATTTAATAAATTGGTTCATTATTATCCATCCTTTTGGATAGAAAAAGAGGGCACAAGTAATAAACTTGTCCCCTCATATATGTATTAGATATATTGCAACTACTCCTCAGCTCTTATATAATAACTAAGGAGCGTTAACGGTTAACAAGTACCATCCTTACTTTGTTAGCTGGTCGATAATTACTGGTAATAATTATCGATCAACGCTCTTTTTCTATGTTTTATTTTTGTATGTTTATAAGTATAGCGGTTTTTAGTTGGGGTGTAAATAAGAAAATTAATTATATATGCAAAATTAATTTTTATACATTTATAACTTTATATTAATTAATTTGTGGATATGCTATCATAATAAAAGTGAATTAAAATACTTGATCTGTAATTCTTGATTGTTGATTTGCCGCGGATCCTTTAGT # Right flank : TAAATAGATTTTAGATACTTAATTTGACGGTTGTAAATCCCCGCGTGGGTATTAATTAGACAGCTGTCATCATATTAAGTAATGCTACAAGCACTATGTGTACCTAATGATTGTGTGACATCATTCAAGTTATTCTAACATGATTTGTGTTGATATCATGATTTCCAGTTACACTAATAATCAATTTCTGAATTTATGTCATTTAAGACATTATTGTTTTGTTTATTTATTATTGTTATTTGAATTATTTGCTTTAATTATTTTAAATGTAGTAATATTAAATATATAATGTTTTTTACATGTATATCTCGCAAGCGCGGGAGTGATTCTAAAGTATGTTAACATTAATTCATATTTTATATGTATATCTTGCAAACGCGAGAGAAAAATCCCTAATAATTAGGGGTTTAATTTAGTTTTTGTTTTTATATAATAAAGTATGTTATCATAAATAAGGAGAGGCTAAATGATAAATTTAAATTTTTTATTGCTAATGATTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCCCGCAAGCGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //