Array 1 720-139 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTL01000021.1 Nocardia neocaledoniensis strain DSM 44717 Ga0244503_121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 719 29 100.0 32 ............................. GGAAAGAAGCCACCATGTTCGACGCCCTGTTC 658 29 100.0 32 ............................. CGACTTGATCCGGCCGATGTGAATGCGGCCGG 597 29 100.0 32 ............................. GGTGGCGACGGCGTCATGTTCATCATCGAGCG 536 29 100.0 32 ............................. CGATGCTGGCGCCCGAACCGGAACCGGCCCCG 475 29 100.0 32 ............................. TCGATACTGACGGAGGCGAAAACGTCTGTGTC 414 29 100.0 34 ............................. TGGAACCGCGTCGAGTGCTGGTCCTGCGGCGAGT 351 29 100.0 32 ............................. CACGTGCTCGCCGCGGTGCCGCGCGTCGACAG 290 29 100.0 32 ............................. CACGTCCGAGAGCAGCCGAAGCAACTTCAGGA 229 29 96.6 32 ..........................A.. TCCCGCATGAGCTGCGCGACGGTCTTCTGCTC G [205] 167 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================== ================== 10 29 99.3 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GGTCACTCGAGGATGGTGGCGTGTTCGAGGTGGTCCGCGGCCGCGAGGTCGTGGAGGTAGTCATGCCCGGTGGCGGTTGAGGTAGAGGGTAGTTCGGGATTGAACTGTCGCGACTGAACTGTCGCGCGGTTCGTCCACGTTCATGTGGCGGCAGCGGATGGCTAGGCATGAATGCCGACCGGACCCGCTGATTCTCGACGAACGTGCGGCCGGAGGGCTTGTTTAGCGCACTGTACTTAACACCTACCTCGACACTATCGTCACCGACTTGATGGGGGCAGCGCATCATGGAGATGCTGGACACTGCAGCGCGAATCGAGGATCTTCGACTCAATGTCGCTTAGACATGGCCTTCAGAGTGGGAGGTGGACAAGGTGGTCGAGACTGGCGCAAGGACGGCAGCGGTGCGGCGACCGGGGTGTTGGTTTGACTATTGTGGTTTTGCTCGAAAAGTGAATGTAATTCTGTCGAGTGCTGTGTGAACATGCAGGTCAGTTAGT # Right flank : CCGAATCGAATTGGCTTGTGGTGAAGAGCTGCTGTGCTCCCAGGCTGAGGTTCCCCCGCTAATCCAGAGAGCGGATTATCTGGTTCCAGTAGGAACCCGGTGATGATAGCTGGCTTCGTACTCGTCGGGTGATCGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6734-9574 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTL01000005.1 Nocardia neocaledoniensis strain DSM 44717 Ga0244503_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6734 29 100.0 32 ............................. AGCGGCCAAGTGGCGAATTCGGGGACGTTTTC 6795 29 100.0 32 ............................. GCGTGGGCCACCGAGGCGATTCCAGCGAGCTG 6856 29 100.0 32 ............................. TAGCGGGGCGGCGGGCCTGGCGGCCCGCCTTG 6917 29 100.0 32 ............................. ATGACCGACCGGCCGGTGGTGGCCGCCCTCGG 6978 29 100.0 32 ............................. CGGGCCCGGCCCACGAAAGGGGAACCGATGAC 7039 29 100.0 32 ............................. TGATCGGCTACGCCGTTGAACCGCTCGATAGA 7100 29 100.0 32 ............................. TCGTGCGTGTAGTACACGGTGCTCGCCGTCTT 7161 29 100.0 32 ............................. TTTTCGCGCGGCGCGCTTTCGGGCGCACCAGT 7222 29 100.0 32 ............................. ACGCGATAACCCAAAGCCGGATTAGCTTGAGC 7283 29 100.0 32 ............................. TTCTGGTCGCTGATGAACGGCGTGATGTTCCT 7344 29 100.0 32 ............................. CGGCGACGCCGACAGCGCACGCTCGCACCTGC 7405 29 100.0 32 ............................. TGTCCGGCGCCGCGTACACCGCGCCCGCCGCG 7466 29 100.0 32 ............................. GCCTTGATCGCGTCTTTGCCGGTCTTGCCCTT 7527 29 100.0 32 ............................. AGCCCCGCCGAGTATGCCGCCGAGGCGTTGGC 7588 29 100.0 32 ............................. ACCGAGTCGCCGGTGATCCGTGAGCAGCTGGC 7649 29 100.0 32 ............................. CTGGGTCTTGAGCAGGTCGGCAAGTACCTGGA 7710 29 100.0 32 ............................. GCCTCACAGTTCGCGATTGTCCTTGCGGTGCT 7771 29 100.0 32 ............................. GCGGACAGCGAGGCAGCGTCGATCGCGACGAC 7832 29 100.0 32 ............................. GCCGATGTGGTGTGGCGTCTGGACGCGGCGTT 7893 29 100.0 38 ............................. GTCGCGCACCTCGCCGAGCGGCTGCGCTTGGCGTGGGA 7960 29 100.0 32 ............................. CTCGCCAAGCTGGAGCAGATCGCGACCGGCAT 8021 29 100.0 32 ............................. GAAACGACCGCCCCCGACGCCGGGTTCGTCAA 8082 29 100.0 32 ............................. TACCCGGCCGCGAGCGCATCGTTCACCGGCGC 8143 29 100.0 32 ............................. AACACCTACACGCCGAACCCGAACGTGGTCAG 8204 29 96.6 32 ................T............ GCGTCCTGGTCGTCGGGCACGTTGAGCACCGG 8265 29 100.0 32 ............................. GTGAACACCGACACCGGCCCGTACCGGGACAC 8326 29 100.0 32 ............................. CGGTGGTCGTGGGTGTGCCACACCCCGTCCAC 8387 29 100.0 32 ............................. CGCCAACACCCAGAACCACGCACACACCGTGA 8448 29 100.0 32 ............................. ATCCCCGCGCAGGACGTGGCCTGGCGCCCGCT 8509 29 100.0 32 ............................. CCGCACGTCCGCTCCCGGCGCTATGGCGGCTG 8570 29 100.0 32 ............................. CCGGTGTGCGGGCACTTCTGGCCGAATCTGTG 8631 29 100.0 32 ............................. CGGAGATCGCGCCCGAGGGCGCGGAAGAGCAT 8692 29 100.0 32 ............................. CCGATTCTGATGGCCGAGCGCACCGCGATGAT 8753 29 100.0 32 ............................. GCACCGTCGCGGAATCGGTGCGCGATCACGAC 8814 29 100.0 32 ............................. CGGAACGGCAGCGTCGCGTACAGCTCCGAGAA 8875 29 96.6 32 ................G............ AGGGTCGCCCCGATCACGGTGAACACCAAGGG 8936 29 100.0 32 ............................. GAGGAAGGTTGGCTGAGCACGGGGACGCAGCG 8997 29 100.0 32 ............................. CACTCGCCGCCAGGCGTCGCCGACGAGTGGCG 9058 29 100.0 32 ............................. TGCGCGGGCTCGGCATCGACGTCGAGCTGACC 9119 29 100.0 32 ............................. GGAAACCGTGCCTTGTGGGTGTCAACTGATAG 9180 29 100.0 32 ............................. AAGAACGCGGCAGTCGGCGCCGGCCTCCCGGT 9241 29 96.6 32 ............................T GTGGCCGCGGTCCTACGCGAGTTTCTGGACAA 9302 29 100.0 32 ............................. TCAGTACCCAGCTCGGCTGAGAATGACCCCTC 9363 29 100.0 32 ............................. ACCGAGTACGCCCAGGTCTGGACGCAGGACGA 9424 29 100.0 32 ............................. AGCAACTGGCCGAAGCCGTCCGTCGCATCACC 9485 29 100.0 32 ............................. AATCTCGACCTGACGCAGCTCGCCCAAGACGT 9546 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 47 29 99.8 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CTTATGTGTTGCGATCAGTAGCTCTTCCTGTGGTCGAGTATATCGGCAGACCGCCACCGGGTGCTTGGGCCAGCAGTATGCAGGCTAAGTCGCAAGGCGCCTTGGTGACTTCCGAACACTCCCTGTCAGCAGTATCGCCAAGGCAGAACGCTCACCCGGGTCGGTCGCAGCACGGTGGCCTCGGGAGGTTGTCCACCGAGCATATAGGTGCGGATCGTCGGCTCGTTGGTTTCGGGATTTCGAGGAGCTGGCGATGTCGTCGTCTGTCGGAGGCAACCCACGCCGAAGCGTTGGAGGCTAAGTTAGCAGACGCAGGTGATGAGCGGGCTGGCATGACGGCCAGCACAAGTTTGTGACGTGGTGGTGGAGTAGGTATCTGGGATGTCAATCCTGGCTGTTACTCGGGTGGAGGACAGTGGTGGTCTGTGTGAGGTGGAGGAACTTGAGTGAAAGTGAATGAGAATCGCGTGATCGTGCGGTAAACATGCAGGTCAGTTAGT # Right flank : CTGCCTGCGGTCGATCTTCGGCCCGCCAAAGGTGGGGTTCTGAGTGGCTGGTTCTGTGTCGGATCCTGAAAGCGATCCCTGGCGCATGGTGACTGGCATGGGAGGTCGTTCTGCGAGGCTCCCCAAAAAGTACCGGTCGTTAGGGTAGGTCCGCAGGGTGAGATGACGGGGCTGTTGTCGCGCGAATCGTCAGATTGCACACTATTATTCCCTTGATTGTCCAGGGCAATTAACCGACCACTCAGTTCACTATCGAGCCAGGAGCCTGCGGGTGAGAGTCAAGCCGGCTTTTTCTGAAGTTAGCCTAACGAGTTTGGTGTCTCCGAAGGTGATCGGCCTAGCGCTCAAGTCCCGATCACGGCCGCAGTGGCTCGGACAGGCGGGTGCTGTATCGGCCGCGCTATGGGCTTCTTTTGTTCTTACGATCAGTGCCGACTTGGGATTCCATCTACTTGCCACGGTCCTCGCGACGCTCATACCTGCTGTCGTTATGTGGCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15063-16676 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTL01000005.1 Nocardia neocaledoniensis strain DSM 44717 Ga0244503_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15063 29 100.0 32 ............................. GCCTCCTGCAGCAGCCTCACGAACTCCTCGTT 15124 29 100.0 33 ............................. CTGTGCGTCCTGCCGCGCCATGCGCCGATAGAC 15186 29 100.0 32 ............................. TCCCGGCTGGAACGGGGCATTGTCAAGTTCCA 15247 29 100.0 32 ............................. TGGGCGGTGTAGAAGCTCGGCGGTTCGACCTC 15308 29 100.0 32 ............................. GGGCGCCGAGTGGGCGTGGACCTCAAGACCGC 15369 29 100.0 32 ............................. AGGTGAGGGGAACCGTACGACTAGGGGGTGCA 15430 29 100.0 32 ............................. AAACGTCTGGACGCTATTGTTAAGCAACAAAA 15491 29 100.0 32 ............................. TGGATCTCCGGGGGAAGAAACGGATTGCTGTA 15552 29 100.0 33 ............................. TCCTGCAGCTGAGTGATCTCCGTCGGCCACAGG 15614 29 100.0 32 ............................. AACGCGAACCAGGTGACCATCGGTATCGAGGC 15675 29 100.0 33 ............................. GCGGCGCTGGCGAACGTAGAAGGGAAGCCGTGA 15737 29 100.0 32 ............................. CCTCGAGGAGGAATAGCCCCATGACCGATACC 15798 29 100.0 32 ............................. CGCCGCGACCGCGGCCGAGGAGCGATCACCAT 15859 29 100.0 30 ............................. GGCTACATGACCTATCGGGGCGACCCGTGG 15918 29 100.0 32 ............................. GACGGCAACAAGCCGATCCCGCTTGGAGGTAT G [15920] 15980 29 100.0 32 ............................. GCGCTGGCCAGGAATCGAGTTCCGTGCACACC 16041 29 96.6 32 ............T................ CGCACGAGCGTGAGCAGCAGGTCGAGGATCGC 16102 29 96.6 32 .................A........... AGGCGATTGCTGAACCCGGCTTTGGAGGCGTA 16163 29 100.0 32 ............................. CAGCTGCGAATCAATCACCGGGTCGCCGGCCT 16224 29 96.6 32 ...A......................... TCGCCCGGATGGGCGCCCTACGGCGGCAACAA 16285 29 100.0 32 ............................. TTGTAGCCGCGCAGGGCGCGGCGGGTGACGCC 16346 29 100.0 32 ............................. TGGACCGACGGCCCAACCGAGGACGAGGTGCG 16407 29 100.0 32 ............................. GGTCTGCACGGTGAGCACCGTAGGCAGATAAC 16468 28 93.1 32 .....-....................T.. ATGTAGAAGGTGGTCGACGGCAAGGTGATTCG 16528 29 93.1 31 ..................A.......A.. CAGACCAACGCCTACCAGTCATCGGCGTCAA 16588 29 89.7 32 .....T...............G.C..... GTGTTGATGCGGATCGGCGATCCGGCCAGATC 16649 28 79.3 0 .C.........CT....-T.........G | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.0 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : ACTCGGCCGGGCTGTCATATCAGTAAGTCTCCGGACACGCCGGGGGGATTCACTGTCACTTTCGGATCCACGCCCGTCGATCGGTTCCGTCGGTGGCGCCTGCGAGGATGCACTGGCCGACACTGCGATCGGGCTCTACAAAACCGAAGCGATCCGGGATGATTCCCCGTTCCGGCGCGGTCTATTGACCCGGCTCGCCGTTGTCGAGTTACTCACCGTGGACTGGGTCGGCTGGTTCAACCAGTCCCGGATCATGCGCTGACTCGGTCGACCGCCGGCTGAACACGAAGCCGACTACTATGCGGTCCACGCCGGGCAACCGGCTGGAAACAGATACCCGGTGCGCATCGATCCCGGGGCGGTTCAGGTTGGATTCGGATGGCGATGCTGGTTGCGACTTGATTTGGAGGACAGTGGTGGTCTGCCGTGGCTGAGGAGGAGTTTGGGTGAAAGTGAATAAGAATCGTGTGATTGTGCGGTAAACGAGCAGGTCAATTAGT # Right flank : GGGTAGATGCTCTACCTTCTGCGCCGTGGTCGGTCACAGTGCAGTTCGTGGAAAGCAGGAATCTCGGCGAATTTCGCAGGGCGCGTGTAATTGTCGGTGGAAGTGGGTATGGTCGGCAGTCGCGGATAGCGGGGGTGGCAGGCGAAAGGGGGAAAGTGGTGGTCTCACCAGCGGTGATGTCTGCGTGGGCGAAGAGCGATCGTGCCGGGGCCAGCTTGTCGTTGTTTCGGCATTCGGCCGACTCCTCGGCGGTTGCTGGCCTGGTGTGGGACCACTGGTTACCGGCCCATGTTCGGTCCCTGCTTGCTGACAGCCTGCCCGGAGGGTTGGCTGATGGGCGAATCTTGTTCTGCTGGTTGTCTGGTTTGCATGACATCGGGAAGCTGACTCCGGCGTTTGCGTGTCAGGTACCGGAGTTGTTCGACCACATGCACGGCAACGGCCTGCCGGTAACAGGAGCGCCTGTCGATCGAAAGTTGTTGCCGCACGGACTGGCCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25828-27998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTL01000005.1 Nocardia neocaledoniensis strain DSM 44717 Ga0244503_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25828 29 100.0 32 ............................. TGCACGACACGTTGGACGGTGCCGGGGTCGGC 25889 29 100.0 32 ............................. CCGCACCCCGAGAACACCCTCACCGAGGGCCC 25950 29 100.0 32 ............................. CACCGGTGTGGCTTCGCGGCGACTTTGCCGCC 26011 29 100.0 32 ............................. CGAGAGCTTGCCATCGGCCTGGACAACGCCCT 26072 29 100.0 32 ............................. CAGCAGGATCGCCTGCAGCGGCTGCGGCAGCG 26133 29 100.0 33 ............................. CACCAGGCCAGCCTCGGGCTCCACTCCGGAAGA 26195 29 100.0 32 ............................. AGCGGCAGGCCCTGACTGTTGTGGCGGTGGCG 26256 29 100.0 32 ............................. GACGTTCCCAGGCTTGAGGAGTCGCTGGTCTT 26317 29 100.0 32 ............................. GAATCGCTGATCGGCTGGTACGTCGCCACCGA 26378 29 100.0 32 ............................. AGCCAACAGCTTCCGAAGTCGGTCTGGGTTAC 26439 29 100.0 32 ............................. GCTTCGCCTGTTGGCTCGTATCGGTCGACGGA 26500 29 100.0 33 ............................. GTCGAACTGTCCAAGGGCGTGCGCGACTGGATG 26562 29 96.6 32 .............T............... GGATTGTCGGCAACCTGCAGTGGTGCCGAGGA 26623 29 100.0 32 ............................. CGAGTCCTGATCGGCGTCGAGGTCGCACACGA 26684 29 100.0 32 ............................. GTGTCGCCGACCGCCAGCACGCCGCCGGTCAT 26745 29 100.0 32 ............................. GCTTGCGCCTTGGTTCCGACAGGGCTGCTGGT 26806 29 100.0 32 ............................. CAAGGCCGCCGCGAAAGCGCGCATCGCCCTGA 26867 29 96.6 33 .........T................... ATGTACGCCTTGCCGTCGACGGTGTAGCGCTGA 26929 29 100.0 32 ............................. GTCGATACGTCATGGATCGAATCCGCCACCGT 26990 29 96.6 32 A............................ CTACACGACGCGCTCAGCCGAGGAGGCACACA 27051 29 100.0 32 ............................. GGGTTCGCCCGCGACATGCTGCTGGGGCTGTC 27112 29 100.0 32 ............................. AACGTCAGCTTGAACAGGACAAGCGCAAGGCT 27173 29 100.0 32 ............................. TCGCTCCGGTCGTGGATCACGGTGGACAGCAT 27234 29 93.1 32 ...........A................T CTTGCCGAGGTCTTCGGCGTGGAACCGCCCCG 27295 29 100.0 32 ............................. CACCGGACCCACATCGCGATGGTGGGGAAGCG 27356 29 100.0 32 ............................. TCGGGCCGGCCTCGCGTGTGGGCGATGACCGG 27417 29 100.0 32 ............................. AGCTTCGTCCACCTCGGTGGACGGCGCCCACG 27478 29 100.0 32 ............................. TCGGCGGGTGCGTTGGCGCCGATGTGGTCGAT 27539 29 100.0 32 ............................. CCATACTTTGGATTCCTGCCTCTCGGGCCAGA 27600 29 100.0 32 ............................. TACCTGGGCGTGAACTACCGCCGCGACGTGCA 27661 29 96.6 32 ............................A CAGCCACCAACGGCGATGCTTGGTGGCCGCGT 27722 29 100.0 32 ............................. AGCGGGCCCAGGGTAGGGCCGACGTTGTTGCC 27783 29 96.6 32 .............A............... GAAGAGGGATGGCTCAGCACCGGTACACAGCG 27844 29 100.0 37 ............................. CGGATTGCGATAGAGGTGGCCGACCGATCGCGGCGAG 27910 27 86.2 33 .......T..-..-...A........... GAGTCGTTCGGGGCGGCGATTCAGGCGCTGAGG 27970 29 89.7 0 ......................A...T.T | ========== ====== ====== ====== ============================= ===================================== ================== 36 29 98.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGTGGTAGTGCTGGTCCTCACCGCATGCCCGGCAGGGCTCCGCGGTCACCTCACTCGTTGGTTCCTCGAGGTCAGTCCGGGTGTGTTCGTGGGTGTGGTCAGTGCTCGGGTACGAGATCTCGCCTGGCAACGGGTGCTCGAACTGTGTAAAGACGGTCGCGCGATCATGATTCACACCACCCGTGGCGAACAGCGCCTGGCGTTCAAGACCCATAGACATGACTGGGAACCGATCGATATCGACGGCATTCACCTGATGCTTCGGCCGCACGCTGGTGACGGCAGCGGTGGCGGGGCACGGCCGGGATGGAGCAAGGCGAGTCGTTATCGTCGTGCGCATCAGGCGAAGCGCCAGCAGTCTGGGAGCGACGGAGAGGGTTAGGTTGTGTCTGAACTCAACTGGGCGTGCTGGCGGTGCGATCTTCGGTGCGTGGCCAGACGATCGTTCGAAAGTGAATGAGAATTGGCTGTGTGGCTTGTATCGCCGCAGGTCAGTTCGT # Right flank : TTTGGGCTCATGCAACCCACACACAACAAACACACACTATTGGCCGGAATCGACGGGAACTGATGGGTGCCTGCCAGCACGTCCTTGACGCGAAGTGCATTGATTACCAATAGTATTGGGTAGCAATAGGTACGTTTGAGCTGATCGGAACCGTCGCCAGGTGGTCGCAGGTTCAAATCCTGTCAGCCCGACAGTGAAAACCCCCTCTGACCTGGGTCGGAGGGGGTTTTCTCGTCCTCGGAGATTTGACGTGGTTTGGCCAAACTTCACAGTTCGAATCTGATCAGGTGTCCAGTGCCTCGAAGCCGCGCTCCTCGGAGTGGTCGTCCGCCGTCGAGTTGGTAGGCAAAACTGCCCGCAGGGGAGTGCGCATCGACGGCGGTACCGGAGGGTGTGAACGGAACGGGTAGGCGCCCGGTGGCGGTGCCCTGGACGAGGCCATCCATCTCGGAACAGGCAGTGCGTGTAAACAGTTCTGGCCCGTGCTCGTGTGATGTGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //