Array 1 253822-255376 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912258.1 Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007 SacpaDRAFT_SPI.75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 253822 29 100.0 32 ............................. AGGATCTCGCCCGTCTCGCCGTCCAGCGGCGG 253883 29 100.0 33 ............................. CGGATGCACGCCCAGCTCGGCGAACTCGGGCTC 253945 29 100.0 32 ............................. CGCGGGATGCCGTGGTCAAGCGCACCGCGAAA 254006 29 100.0 32 ............................. CGGGCCCTGTCCCGCACCGCGGGGTTGGTCAC 254067 29 96.6 32 ............................G CCACGGCACGCTCGGCAAGGTCCGTCAGGTAC 254128 29 96.6 32 ............................G ACGCCGCCGACCGGGCTGTGGAACGGGTGAAC 254189 29 100.0 32 ............................. TGCTCGATCGCCACCGACTGGAGCCCGGCCGT 254250 29 100.0 32 ............................. ACGGTGCCCGCGAGGATCACCAGACCGACGAC 254311 29 96.6 32 ............................T GGCGATCCAGTGCCCGGACCCGGACAACGTGA 254372 29 100.0 32 ............................. CGTCAAGGCGCCGCGTCGGCCGACACCGTCGG 254433 29 100.0 32 ............................. TCCTCCAGCTCATCCGTGAGCCGGTCAATGTC 254494 29 100.0 32 ............................. TCCTCCAGCTCATCCGTGAGCCGGTCAATGTC 254555 29 96.6 32 ............................G TACTGGGAGCTGTTCGCCTCGCGCATCGTGGA 254616 29 100.0 33 ............................. TGCGACGGAATCCATGCCGCCGGGGTGCCGTTG 254678 29 96.6 32 ............................T GTCCGCCTGAAGGGTTCCGCTACGGGCGGGAA 254739 29 96.6 32 ............................T GCGCGCTCCGGAAGAACGGCTACCTCGTGACG 254800 29 96.6 32 ............................T GACGACCGTCCGGACCGCACGCTTCAGATCGG 254861 29 100.0 32 ............................. CATGGGCATCACCCGCACCCCGGACGCCGTAC 254922 29 100.0 32 ............................. GAGGTGAGACATGACGGTGCCCATCCGGTCCG 254983 29 100.0 31 ............................. TCCGAGACGGTCGCGGTGTCCCCGGGGACCG 255043 29 100.0 32 ............................. GAGTCGAGCGATTCGAGGTCGGCGGCGCGCAG 255104 29 96.6 32 ............................G GTCACTCAGCTTCTCGACACGATGTCGGGGGC 255165 29 100.0 32 ............................. TCGTGCCCAGGTTTCCGGCTCGATGAGGTGAT 255226 29 96.6 32 ............................A CGTCTGCGTAACGGCCCTGCTGTTCGAGGTCG 255287 29 96.6 32 ............................G GTGAAGCCCGGTACCGGCCGGATCACGCTCAC 255348 29 86.2 0 ...........A...........C...GG | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTCTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : TCGCCGGGGCTAGGTCCGCGTCCCACGGCGCGTCGCGCGTCGGTGACCCGGCCCGGGAAGGGGGCTGGCACGTCGGCGCGGAGGCCGTCGAGGTAGTCGCCGGTGCCCATGCGCCACGGCCGCGCACCGGTCCGGGCCGCCACGTGCGCCACGATGCGCAGGCCCTCGCCGTCGAAGTCGCCGTGGTGGTGCAGCCGGGTACCGAGGTCCGCGGCGCGGCGCAGGGTGCAGCACCGCGCTGTTCGGCCAGCCCGACGTACACACCAGCGGCGGGTATCGGGTGCCGAACCGGCGCAGCGCCATCGCCAGGATGCTCGGATTCTCCACCACCCATATCTCCGACGGCGCCCCGGTGATCTCGCTGTCCCGGAGCTGGGCCAGCGTCAGGCTACGGGTCGGGGGCGACACGCCGGGTGGAGATGGGCCGAGGGCGGGTAGGGTGCGGGTCAGAAGTGAATGAAAAACAGCGTCACGGCCGACATCAGTGCAGGTCATCAAGT # Right flank : GTTCGGCCAGGACGAGGGCGTGGCCACTCGCCTGCCGTGAGGACGTCGCACGTGCGCGGTCACATCTGGTACCCGGCCCCCACCAGGCTTCTACGGAGATGCTCAGCCGGCTCCCGGATTCGGGTCAGTGCCTGCGCGTCCTCCTCCACATACGCCAGCGTTCCACGCAGGATCTCTGCGCTGCGAGTCGAGCCGATCTCGTCGACCAGCGGGAGTATCCGCTCGGTGGTCTGGCGGGCGTCGTCCCACGACGCTGCGCGCATCTGCGCGTCGAGCAGGCAGGCCAGATGAACATAGCGCCCGCGCAGCGCGTGTGGGGGGAGTTGCGTGACGGACTCGTGGAACGCCTCGATCGCGCTCGACCACTGCGCGGAATCCGCATTGATCATGCCTTGATGCCATGACAGCTCCGGGTCGGTGATCCACCACGACCATGCCGGATCGTCATCCCGCACCCCCTCCAGGTAGAGCGAGTGAGCTTTGCGGAAGGTGTCGCGTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 257877-261564 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912258.1 Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007 SacpaDRAFT_SPI.75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 257877 29 96.6 32 ............................A CCCGCCCACCGGGTGGGGCGCACTCCACTGTG 257938 29 100.0 33 ............................. CAGGCGTCGGCGCTGATCGAGACGCTGGACATC 258000 29 100.0 33 ............................. TGCGCCTTCCCCCGGTCGCCCATCGAGCAGGCG 258062 29 100.0 32 ............................. CAATCGCGGTTGGCGTAGACGGTCGCCTGATC 258123 29 100.0 32 ............................. CACCGTCCGGGGTAATGCTCGCAACCAGGGTA 258184 29 96.6 32 ............................G GTCCACCGTGGTCCGGACCGGGCGGGTACGGA 258245 29 96.6 32 ............................G CCGGGCACGGGCCGGATCACGATCACGGGCAA 258306 29 96.6 32 ............................G GAAAAACGAGGTAAATGATTCCACGCTCACGA 258367 29 96.6 32 ............................G TGATACCCGCCGTACTTGTTCAGGATGTAGAG 258428 29 100.0 32 ............................. TGTGCGTTGTGCACGATCGCCTCGACACAGCG 258489 29 96.6 32 ............................T GGGGAGGAATCCATGAAAAAGCCCCTCCCGGC 258550 29 96.6 32 ............................G GGTGATCCCGCGAATGAAAAAGCCCCTCCCGG 258611 29 96.6 32 ............................G GGCGCGTCCCCCAGCCGTTCACGGTGTCGGGG 258672 29 100.0 32 ............................. CGCGACGGCATCGCCTGCGACGAGGTTGCCGA 258733 29 100.0 32 ............................. TCGGGCTCACCGGGGACACGGCGCGGGACACG 258794 29 96.6 32 ............................G CAAGACCCGGAGTTTCCGCCCCCGACCGGTAA 258855 29 100.0 33 ............................. CTGATCTACACCGATCCGTGATCGGGCCAGTAC 258917 29 100.0 32 ............................. ACTGACCTGACCCGGGTGGCCGCCGACGACCG 258978 29 100.0 32 ............................. GCGGCTCATGGCCCCACCCGGCGCCCGCCGGG 259039 29 100.0 32 ............................. GGCGGGCCGTGCGCCGTGGCGTCGTCGGCGAC 259100 29 100.0 32 ............................. GTGGTGCCGTCGGCGGTGGCCTTGGCGAACGA 259161 29 96.6 32 ............................T GATCCGTGGGTGGTGATGTAGTGGCGACCGTG 259222 29 96.6 32 ............................G TCGACGGCACGTACTGAGAGTGACGTTATCCG 259283 29 100.0 32 ............................. CTCTCCACGTCCGACCGGGAGGCGTGGCGAGA 259344 29 96.6 32 ............................G CGAACCCGCCTCATCCGCGAACGCGTCTACGC 259405 29 100.0 32 ............................. GGCCAAGGGCTGTGTTCGCCGTGCCACGACAA 259466 29 96.6 32 ............................T CCACGTCCGGGGCGGCCGTGTGCACCAGCGCC 259527 29 96.6 33 ............................A GGCGTGGGCCGACCTCGACACCGTGCGGGAGGA 259589 29 100.0 32 ............................. CCGTCGAGCACCTTGTCTTCGGCGAGCGAGAG 259650 29 100.0 32 ............................. TCGACGCTCCGCCCTGGCGGGAGCGCGCGCAG 259711 29 100.0 33 ............................. CTCGTAGTACCAGGTGGGGCTGTGGGTGCCGTC 259773 29 96.6 32 ............................G CAGCTGAAGCAGGTCACGATCGGTGGTCGGTG 259834 29 100.0 32 ............................. GGAAATCCCCACGGGGACTGAGCACACGCGAC 259895 29 100.0 32 ............................. ACGGCGTACGCCTCGCCCGAGCGGTCCGGCGC 259956 29 100.0 32 ............................. AAGATCCTCGGCTCGATCGAGGAGCTGTCCGA 260017 29 96.6 32 ............................G AGGCGCTCCGCTGCGTCGGCCAGTGGCAGGCC 260078 29 100.0 32 ............................. CGCCGGCGATGCCGCCGAGTCCCTGCTCGACG 260139 29 100.0 32 ............................. CGTTCCTTGATCTGCTGCGCATCCTCGCGGGT 260200 29 100.0 33 ............................. ACAGCATCGCGCCGAATGGATCATCGTCCGGCA 260262 29 100.0 32 ............................. CGGCACCGCTTCACCCACCAGGCCGATGCCGC 260323 29 96.6 32 ............................G CAGTACTGCTCCGCGCAGCGCACCGACGGGTG 260384 29 96.6 32 ............................G CCATCCCCTGCGTGTCTCTGCGCAGGTCTGCG 260445 29 96.6 32 ............................G GGGACAGAAGCGGGCAGAACAGAGCTTGCGGT 260506 29 100.0 32 ............................. AGCTCGCACTCATCTGAGGAGGACCGATGTCC 260567 29 96.6 32 ............................G CGTTGGCGAGCATGGTTGAGAGCGGGAACTCG 260628 29 96.6 32 ............................G GAACGGTTCCGGTCCACCTCGGCGGGGCCGGA 260689 29 96.6 32 ............................G TGTGACCGGGCTTCGGTGCCGGCGGTGGAGAC 260750 29 96.6 32 ............................G TGTTCACCTACGACCTGGAGGGCCGCACCGTC 260811 29 100.0 32 ............................. CCGGCCGTCGCCCCCGGCGGAGCCGTGTGCGG 260872 29 100.0 32 ............................. TCGACGCTCCGCCCTGGCGGGAGCGCGCGAAG 260933 29 100.0 32 ............................. ACGGCTGGTGGCACCCAACGTCCCCGGTCGTG 260994 29 100.0 33 ............................. CGGACGAGGTCCGGGTGATCCGGCCGGGTGTCC 261056 29 96.6 32 ............................G TAGACGGCGATCCAGCCGTGGGGGATTCCGCC 261117 29 100.0 32 ............................. CGTGTTCGTGATCGCCGACCCGCTCGACGGGT 261178 29 100.0 32 ............................. GCCACCCTCGGCCGGCTGCTCGGGTTCCAGAT 261239 29 96.6 32 ............................G GTGCGCAGCTTCGCGGTGGCGTTGGGTGTGCC 261300 29 96.6 31 ............................G AGATCTGGTGGTTGAGCTGCAGCGCCAGGTC 261360 29 69.0 146 .......G...A..C.AA...C..A..AA ACACGACAAGAGGCACATGACGTCGTCGGTGTTCCCTGCGCAGACGAGTGGCCTCGCGGTCATGGCCGCAGGATGTCCGCGTCGAGGTCTTCGCCACGCATGCGGGGCATTCATCGACGCAGCCGAATCCAGCTCATGACCTCCGA A [261367] 261536 29 69.0 0 ..C....T.AT..TC.......A..A..A | ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 59 29 97.5 34 GTGTTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CGGATCCGACCGGGACTGATCGCCGGGGACTGATGTCTTGATCGGAAGTTCGGGTGAAAGGAGGAGGGACATGTCAGCACTGACCAACGTCGGCAGCTCACCCGGGAAGGGGCGGCTGTCGACAGCGCGGCTGCGCATAGCTCGGGCGATCGAGTCAGAGACCGAGCCGCTGTACCGGCGTAAGGACGCCGGACACGACGACGTTCTCCCGGCATTGCGAGCTATCGCCTTCTTGGCGCTTGAGCTTGGCTTCACGATCGCGGAGGAGGGAGGATTGGATTGTTCGGAGGTCGAAGCAGCCGTCGCGCGGGTGTACGACCTTCCGGACTATGGCGATCAGGACCCGCGACACGAGGTCCCGGCATGAGTCTCGCTGGGTGGGTAGCTCCGCGGCTTCGAGCGGCCAGCACCGTAGAGGGCAGGGGCTCGCGGTGCGTAGGCTGCATGGCAAAGTAAATGAAAACCGCTGTTGGGGCTCGCATCGTCGCAGGTCATCAAGT # Right flank : AGGATGCCATCCGACGGTGTCATAGCTGCCGTTCAGATCCTCGTGGTCGGTCCCACCGGCAGACCGTGTAGTCGTTTCGCGATTCGCTTCCCAGCGGCCTGTAACGACAGCCGCGGCCCGAGAGACATATGGGGGACCGTGCCGACGATGACCTCTGGGGGTTGTGTTGGGCCACTCGACTGCCTGGCTCTCGGGCTGGGCGAAGTCGTACTTCGACCGGGAAACGAGCCAGGTCACGCATTGGCTTCCGCTGTTCCAACACCTTGAGGACAGTGCCGCCGTGGCGCATCGCCTGGTCGCCGACTGGGTGCCGGGGCAGGTCGTTCACCGCATCGGAGCGGCTCTTCCGGGTGGGGAGGACGACGTCGGCACGCTCGCCGCGTGGCTCGCCGGAGTGCACGATGTCGGCAAGCTGTCGCCCGCGTTCGTCGTGCAGGCGCCGCGGCTGGCCGACCGGATGCGGGATCACCAGCTCCACGCCGATCCCGCCTTGAAGGACA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 270847-274170 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912258.1 Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007 SacpaDRAFT_SPI.75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 270847 29 96.6 32 ............................T ACGAAGCCCAGCAGGCGGGAGGCGAAACCGTC 270908 29 96.6 33 ............................A TCAGAGCGTAAGGGCCCGGGGTTCCCTCGGGTT 270970 29 96.6 32 ............................G CGACGAAGGAGCAGAGTTGAGCACGTTCACGT 271031 29 100.0 32 ............................. GGGTTCGGGCTGCCCTGGTCGGTGAGGATGAT 271092 29 96.6 32 ............................T GTCCAGCCTCGCCCACCGCGACGGCTCGTCGC 271153 29 96.6 32 ............................G GACGCCGAGACCGACATTGCGCCGCTGGTGGC 271214 29 100.0 32 ............................. TGGCGGATCTCGGCGACCAGGCCCTTCAGCGC 271275 29 100.0 32 ............................. GGGCGCCAGGTGAACTACCAGGCTCTTCCTGG 271336 29 100.0 32 ............................. CACCATCCGGCGCTACGACTCGCGCCCTGACA 271397 29 100.0 32 ............................. TCGGCGAGGATCGGCCCGCCCTGGGTGGCGAG 271458 29 100.0 32 ............................. CAATCGCGGTTGGCGTAGACGGTCGCCTGATC 271519 29 96.6 32 ............................T CTGCAGCGTGTCCCCGGCGTAGATGCGGTCGG 271580 29 100.0 32 ............................. TCGGCCTGCAGCGCGCCGGGCAGGTCGGCCTG 271641 29 96.6 32 ............................G TACGGCGGGTATCACTTTCAGGATGACGCAAA 271702 29 96.6 32 ............................G CGGAGCGGGTAGGAGACGACACGGAGGTAACC 271763 29 100.0 32 ............................. GGCTGGCAAGGATAGCCCGCAGTCAACACGTC 271824 29 100.0 32 ............................. GGCACCTTGCCCGTCGGGCGCCCGTCGCGGGC 271885 29 100.0 32 ............................. TACGCAGAGCGTCTACAAGACCGCATAGAGAC 271946 29 100.0 32 ............................. TGGGACAACAGCGAGTAGAGAAAGCTGGTCTT 272007 29 100.0 32 ............................. GGAGCCGTGACCATGGGCACCACACGCACCCC 272068 29 100.0 33 ............................. AGCGACCTCGCCCAGCCCGAGCAGGACGCGACG 272130 29 96.6 32 ............................G GTTGGTTACGGAGTGAAGTCGACGGCACGTAC 272191 29 100.0 32 ............................. TAGGGGGTGTGGGAAACCGAGGCCGAGGTGAA 272252 29 100.0 32 ............................. GGAGTCGACGAGTTCGTACAGGTCAATCTTCC 272313 29 100.0 32 ............................. GTGGGCTGCATGAGATCCCTCAAGGTGAGCGG 272374 29 100.0 33 ............................. TCCGTGGGATGGACGCTGACGACCCGGCACACG 272436 29 96.6 32 ............................G TCGAACGACTTCTCCTGGTCGATGAGCAGGTC 272497 29 100.0 32 ............................. TCGGCGTTGACCACCAGCGCCCGATTGCCCAG 272558 29 96.6 32 ............................G CTCCCGTGAGACCAGGCTAGTGGCAACCCCTC 272619 29 96.6 32 ............................G TTGGTGCGGGCCTTGCGCTGGAACTGCTGGTA 272680 29 96.6 32 ............................G ACCCACGATCGCGACGAAACAAGTCGTCCGAT 272741 29 100.0 32 ............................. GAGGCCGCGAGGCTGATCGCCGAGCTCCGCGA 272802 29 96.6 32 ............................G GTGGATCCACGGTTCCGCACGGACTACCTGGT 272863 29 96.6 32 ............................G CGCACACCACAAGACGTGGGCGATCGACCAGG 272924 29 100.0 32 ............................. TGGTCACTCCCAGGGTTGATCATCAAGCACTG 272985 28 96.6 32 .....................-....... TCCCACCACAGCCGGATGTCGTCGTAGAGACC 273045 29 96.6 32 ............................A CAGCAGGTCAGACGGCAGATAGACCCCGATAA 273106 29 96.6 32 ............................T CAAGGCGGCGACCTGGTCGAATCCAACATCCG 273167 29 96.6 32 ............................G TCGGGGAACAAGCGGTCGTAGGCGTCGAACGG 273228 29 100.0 32 ............................. GGAGCGTGACGAATCTTGCTCCGTCCCGGTGG 273289 29 96.6 32 ............................T CCGGAGACCCGTACCGATTTCCGGATCACGGA 273350 29 96.6 32 ............................G AGCAAACCGGCCGCGCTCGTCGCCTTGGTCGG 273411 29 96.6 32 ............................G GTCGGCGGCGCCGAGATCGGATTCAACACCAA 273472 29 96.6 32 .....................A....... ACCGTCCCGGCGGCGACGAACATCCCGACGAT 273533 29 100.0 32 ............................. TGCGCCCGGCCCCGGTCGCCCATGGAGCAGGC 273594 29 96.6 32 ............................G AACTCGGGCCAGCCGTCCGGGATGGACGGGTG 273655 29 100.0 32 ............................. GGGTTCGACGAGCTGGGCGAGTGGTCCGACGA 273716 29 96.6 32 ............................A CGCCCTCAGGGGGCGTGGTGCCGAGCGCGTCC C [273725] 273778 29 100.0 32 ............................. CGGTCGACCACGACCGATATCGCCACGATGCC 273839 29 96.6 32 ............................G CAAAACCCGACGTTCGCCGGGAGCGCGTTCGA 273900 29 96.6 32 .....................T....... GTGTCGACCGCCTACCGCCGTGCCGACTCGCA 273961 29 100.0 31 ............................. GTGCGCGCGGGAACGGGCCGACCAGCACCGT 274021 28 82.8 32 ...........T.A...-A....T..... TTCGCCGGGGCCGCCGGACCGATGCAGTTCCT 274081 29 72.4 33 ......T....ATAG......AC.....T GGTGATCAGGAGGATTCCATGTTGACTGAGTCG 274143 28 69.0 0 ...-..T.A..CT........T.A.C..T | ========== ====== ====== ====== ============================= ================================= ================== 55 29 97.0 32 GTCTTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGGCCGGCGGTGTCTCCTACGGGAGTGACGACGAATGACCGTCGTCGTGGTCGCCGCCTGCCCGGTAGGGCTGCGCGGGCATCTCACGCGCTGGATGCTGGAGATCTCTCCCGGAGTGTTCGTCGGCACGGTCAACGCGCGCATCCGTGCGCTGCTGTGGGAGCGGGTGCTCGACATGGTGCAGTCGGGCCGGGCCATCATGGTCTACTCCGCCGACAACGAGCAGGGGCTCGCGTTCCAGGTCCACGGGCATGACTGGCAACCGGTCGACTTCGACGGCATCAACCTGATGTTGCGCCCGAACCCGTCCGACGAAGCGAAGTCGCCGTCGTCCGGTGCGAAGTCGGTGGGCTGGAGCAAGGCGAGCCGCCGAAGGCGCTTCGGCAACCGGGGGTAGGAGCGCCCGCAGGGCGCTCATGGGTCTGTGGGGCCGAGCGCACGCACGAAGTAAAGTGAATGAAAAACGCCCCAGTGCCTCACATCGCCGCAGGTCATCAAGT # Right flank : TCTCGACAGCCGCTGACGTGCAGTTCGACGCTCCCTGCAGGTACCGTCGGGCATCCCAGTGCCGGGTGGTCACCGGGTGATCCACGAGTCGTCTACTATCGCGGCTAGTAGTAAGGCTCGGAGGTTTCATGCGACACGCATCCGGTCGGCTCCCGGCACTCGTGCTGGGCGTCGGGCTTCTCGTGGGCGCTTGTGGTGCGCCGGTGGAGGACACCACGGCATCCGGGGCCGGTGATTCCGGGCCCGCGTTGCCGGAGCCGCGGTTGGACACGTCCACCTCGGCGCCGCTGCCCGCTCCCGAGGCGGACTCCGCGCCGGTGCTGGCGCAGCCGGAGGCCGCCTGGAAGGCGCCGTTCGACGACGTCCCCTACCCGGCGGGCGACAACCTGGTGGGTATCCGGTTCCCCGCGGACGACGAGTCGGAGTTGGGGATCGTCGGGGTGGCGCCGTCCGGGGAGACCCGGTGGACGGTGTGGACCAACCCCTCGTGCGTCGGGTAC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 279249-279642 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912258.1 Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007 SacpaDRAFT_SPI.75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 279249 29 100.0 32 ............................. ACCCACGATCGCGACGAAACAAGTCGTCCGAT 279310 29 96.6 32 ............................C GAGGCCGCGAGGCTGATCGCCGAGCTCCGCGA 279371 29 89.7 31 ........................TC.G. TGGATCCACGGTTCCGCACGGACTACCTGGT 279431 29 100.0 32 ............................. CGCACACCACAAGACGTGGGCGATCGACCAGG 279492 29 96.6 32 ............................A CAGCAGGTCAGACGGCAGATAGACCCCGATAA 279553 29 100.0 32 ............................. GTTGGTTACGGAGTGAAGTCGACGGCACGTAC 279614 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTCTTCCCCGCGCGTGCGGGGGTGGTCCG # Left flank : CTCGGCCCGTTGCGCACGCACACGACGAGCCTGGTCTCCGGCCTGCTGTTCATCGGCGTGGGGATGCTGTTTCTGTTCACCGAGGGCACGGCCAACCTCGGCGGCCTGACGAGCGTGGACACCCAGTTCTCGATCCAGGAATGGGTGCAGGGCTTCACCGGCGAGGTGTCCAACATCGTGGTGCTGCTGGTGCTGGTGCTGGCGGCGCTGGCGGTGGTGCTGGTGCGGATGCTGCGCTCCCGGAGCCGGGAGCACGGCGAGGACGGCGAGCACGAGGGCGAACACGAGGCCGACCCGGAGCGGGCCGGACAGACCCGCCGGTGAGCCGGGACGGGGCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCCCGCGCGTGCGGGGGTGGTCCGCTCCCGTGAGACCAGGCTAGTGGCAACCCCTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTGCGTGGCAGGCACCACCTGCTGGTGCTGACCGCGGACATCCTCGCCGCCGCGCTGCCGTTCGTGCCGCTGTGCCGCCGGGCACCCGGCAACGTGCGGGTGCTGGTGGAGCTGGCCGCCGACGACGCGGCCGCCCGCAGGCACGGCCCCGGCCCGGTGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTTCACCACCGTCGGACGTCGAGCACGATGTCGATCGCCGTGCCGCGGTCGGTGTCCCGCAGCACGTGCCGCAGGGCGTCGACCCGCAGGCCGCCCGCGGCCCCGGCGAGGTCGGTGATCGACGGCATCACG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //