Array 1 42757-44106 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUIH01000067.1 Bacillus cereus strain AFS050653 AFS050653_110_D4_Contig67_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 42757 32 100.0 34 ................................ ACCTTGGATGCGGCGTTGTGCTCCAAAGGAAGGT 42823 32 100.0 35 ................................ TGGTATTATGAGTCTCATATCAGAAACGATACCTG 42890 32 100.0 35 ................................ AATGAAATGGTTGGGTGATGTGTATATGGACCAGG 42957 32 100.0 33 ................................ TCAACATTCTGTTATCCTAAAATTAACAAATTT 43022 32 100.0 34 ................................ CCCAATATTGCGTCACTCCACCTCCACCGACTGC 43088 32 100.0 34 ................................ CGTTTCTTCCTCATCGTAAGAGCGTGTAACTTTA 43154 32 100.0 33 ................................ AAACCATATTCATGCAATAACAAACAGAAAAAG 43219 32 100.0 35 ................................ CACTTTTTGTCCATTATGCTTTAAAACTACTGTTA 43286 32 100.0 33 ................................ ACCTTGATCTCTTTGTACATCAGAAATAGTTCT 43351 32 96.9 34 .......T........................ CCGCACCCTTCGAAACAATAACAGTTGTTGTCTG 43417 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACCCATTGAGGTA 43483 32 90.6 34 .........C...A........A......... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 43549 32 93.8 32 .........A..............G....... CACATTAAGAATTTTGGTACAAAGATTGTAAA 43613 32 100.0 33 ................................ ATGCCAATTGGTGTACAAGCGGACTTTATTAAT 43678 32 96.9 34 .........C...................... ATTTGGTAGCGCATTGTATATGGATGCACGATTT 43744 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 43812 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 43877 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 43943 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 44009 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 44075 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGG # Right flank : TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGGGTCGCACCTCATATAGGTG # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31860-30638 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUIH01000040.1 Bacillus cereus strain AFS050653 AFS050653_110_D4_Contig40_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 31859 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 31793 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 31727 32 93.8 32 .C..................A........... TCTCAGGGAAATTAAATCCCATGCTACCACCA 31663 32 100.0 35 ................................ TTTTTCATTAAGAGCATGTGGTTTGAAATATTGAA 31596 32 100.0 35 ................................ AAGATAGTAAAGGTAAGAAAATTAGTGAACACAAA 31529 32 100.0 35 ................................ CAATCTTGGGTAGAGGTGAACTGGATGAAAAAAAT 31462 32 100.0 35 ................................ ATTTTGGTACAGGATTTGCAGCAGGTATTGGAGAG 31395 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 31329 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 31264 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 31196 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 31131 32 93.8 35 .........G...A.................. TCAATACATAAATCCAAAAAACTAACAATCGGGTC 31064 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 30997 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 30932 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 30867 32 81.2 100 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAAATCAAACCCCTTATAGGGGTATGGATTGGGATTTTTGTCATCACATCGTATTTACTGTACATGCTG 30735 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 30670 32 75.0 0 ....T....C.......CA....AG...G.C. | A [30643] ========== ====== ====== ====== ================================ ==================================================================================================== ================== 18 32 92.5 38 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACT # Questionable array : NO Score: 8.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //