Array 1 90-974 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZV01000835.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2770 NODE_835_length_1471_cov_1.90688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 151 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 213 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 274 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 335 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 396 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 457 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 518 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 579 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 640 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 701 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 762 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 823 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 884 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 945 29 96.6 0 ............T................ | A [972] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZV01000180.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2770 NODE_180_length_6931_cov_2.44837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 109 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACCGGGTTGCCGTAGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 762-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZV01001035.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2770 NODE_1035_length_772_cov_1.48207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 761 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 700 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 639 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 578 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 517 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 456 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 395 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 334 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 273 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 212 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 151 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 90 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGATCTTAG # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //