Array 1 264770-263763 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKJT01000027.1 Pseudoalteromonas sp. JW3 Pseudoalteromonas_sp_JW3_S33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 264769 29 100.0 33 ............................. TACGACGGTAAATCGGTCACATCGGGTACCGCA 264707 29 100.0 32 ............................. CTTACAGTGAGAGACTTTCCCCCTTATCATCT 264646 29 100.0 32 ............................. TTGACTTATAAATAGAATATATTCTACCTAGA 264585 29 100.0 32 ............................. ACCTTATCAGTGATTGCTTTGTTACCAAAGTG 264524 29 100.0 32 ............................. AACACAATAATAAATGGCGTCTTAGCTAACAT 264463 29 100.0 32 ............................. AAGTAGCCGCAATCTACGGCATCGCATCAAAA 264402 29 100.0 32 ............................. TTAAAACGGCTTGCCTTTGCTGTTTCAAAACA 264341 29 100.0 33 ............................. CACTGAAAACAGCAAAGGGCTCAACAAGACCAT 264279 29 100.0 32 ............................. GCTGGACTGTGCTTTGGGCTAGGGAGATTTCT 264218 29 100.0 32 ............................. GCGCTGATCAGGAAGATATTAACGCCTTTCTG 264157 29 96.6 32 ......T...................... CTGAATATGATTAGATAAACAATGTATAGCAT 264096 29 100.0 32 ............................. CTTTTGCAGGGCCATTTCAAACGGGTCACCGT 264035 29 100.0 32 ............................. CTCTTTCTCTGGTTCTACATAGCGGATATCAT 263974 29 100.0 32 ............................. GTATTTCAGTTATCACTTATAACTATATGTTT 263913 29 100.0 32 ............................. TCACGTTGAGAATGCATCGGCATATAATCAAA 263852 29 100.0 32 ............................. CGCGTGACTGAAATCAATGTTATGCACAATTC 263791 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCGTACCCACGGGGCTAAACCG # Left flank : GAACCTGAATCCATAGGTGATGAAGGCCATCGCAGTGGAGGTTCGTGATGAGTATGTGTGTAGTGGTAACCGAGGCTGTTCCGCCAAGACTTAGGGGACGGCTTGCTGTTTGGCTGCTCGAAATTAGAGCGGGTGTGTATGTTGGTGATGTCAGTCGCAGAATTAGAGAAATGATCTGGTTTCAAGTTAATGAATTGGCGGAAGATGGTAATGTGGTGATGGCTTGGTCAACCAATACCGAGTCAGGTTTTGATTTTATCACCTATGGTGAAAACGCCAGAATGCCAGTAGATTTCGAAGGATTGAGATTGGTGAAATATACACCTAGAGGTGATGAAAGCATTGAGTCGTGATTAGCTTTGCACGATTGATAATAGCTCTTTAACAATATAAAAGTTGGTATTTTTAAACTTGTAAAAATAGAGAAGTTTGTACCCAAAAATTTTGGTAGATTTTATAGGGGACTTTTTCTTTAATAAAAACAAGTGTATATTTTTAGA # Right flank : TCTCGGCGCATTACTCCTAAAGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGTTTTGGAGTTGAGTGACGGGTTGGGAATTGGATGAGGGGTTGGAAGTAGGGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTTGTGTCGGTTTTGTTGCAATGTGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGGTTTGGAGTTGAGTGACGGGTTGGAAGTAGGGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTAGTGTCGGTCTTGTCGCCATGTGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGTTTTGGAGTTGAGTGACGGGTTGGGAATTGGATGAGGGGTTGGAAGTAGGGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTTGTGTCGGTTTTGTTGCAATGTGCACATGGACCCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276905-275470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKJT01000027.1 Pseudoalteromonas sp. JW3 Pseudoalteromonas_sp_JW3_S33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 276904 29 100.0 32 ............................. GCTAGCGTCTGATGAAAATGGGCTGTTGGCGT 276843 29 100.0 32 ............................. CAATTCCTCTGCTTTTTTGAAGCTGCTAGCAT 276782 29 100.0 33 ............................. CCACCAGCAGAAATTGAGCGAAAACTAGAAGCC 276720 29 100.0 32 ............................. CCAAGCACATGTAATGAATTGGCTTTTTTGGG 276659 29 100.0 32 ............................. AGTTAACTACACAGGCTTTGTGGTCTGAAATG 276598 29 100.0 32 ............................. TAATGTAAATATATATACATGCAACAGTAGAG 276537 29 96.6 32 ............................A GGTAGACTGGCACCAAGTGCTGTCATTAACGC 276476 29 100.0 32 ............................. CATATCGTGGAACATCAATGCTTGGCCCGAGG 276415 29 100.0 33 ............................. TCGGTCATAAAATGATTATACCTTTCATTTTGC 276353 29 100.0 33 ............................. TGTATTGTTGGGTTTGAGGCTTTGGCTCGTTGT 276291 29 100.0 32 ............................. GCCTGCTGATATTGGTGAGCCGTGCAAATTTA 276230 29 100.0 32 ............................. CTATTGATATCAGGTTTAAAAAGCAGATGCGC 276169 29 100.0 32 ............................. GTCTTGCGCTTTGTCAGTTATTTTATGTTTAC 276108 29 100.0 32 ............................. TTATCTAGTTACAGCGGGTATCGCGGCTGCTG 276047 29 100.0 32 ............................. ATTAGATAGTGTTGCAGCAAGTCGTTTGCAGA 275986 29 100.0 32 ............................. GGTTAAGCAGCTCAGCGCGCGAATATAACGCG 275925 29 100.0 32 ............................. TTTTTCTCAGCGACATAGCCAATTTACCAACA 275864 29 100.0 32 ............................. CCATACGAAATACCATCAATGGTTGATAGCGG 275803 29 100.0 32 ............................. TCTTGATTTGTTTTTGAGCCATCAGGCTTAGT 275742 29 100.0 32 ............................. TTTACATAAATTTGATAATCTGTACGTTCCAA 275681 29 100.0 32 ............................. TTCTAAGTTGCGCTTCAATATCCCTATACAAA 275620 29 100.0 32 ............................. ACTTGATAGAATTGGCGGATCAAAATCAGTGC 275559 29 100.0 32 ............................. GCAGCTGGTAATGATTAGCAAGTTCAACTTGT 275498 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGTACCCACGGGGCTAAACCG # Left flank : AATTCCCAAAGATACTCCCTTGTGCCTTTGATATTCTCAAAAGCATGACATTTAGCAAAGACGAACTGGCCCAGTTCGCGTTGCAAGTAAACGTGCAGGCTCAAACTAGCAAGCAAGTCAGCCAACAGTGGCTGTCACAAAATCAACAACGTTGGCAAAGTTGGCTTAACCACACCAGTTGCGATGCCTATCGAGATTGATCGGTTAGCTTAAATGTGTGAGCAGTTACATGTACGTTTTATATATTGCTCTATGAAAAGGACTTGTTATTGACTACATGTGGCAAACTTAAGGTAGTCTCTAAAAACTTTCTGATAGATAGCCATTATTGGTAGCTGCTATCTACTCAATATTATATGTTTATCACTATAGCTTTGTTCTTTGATAATTTGAAAATCGTGATTTTTAGCACTAAAGACTAGCACCATTTTGTACCCAAAATTTTCGGTGGATTTTAGATGGCATTTTTTATTTAACAAAAACAAGTATATACTTTTAGA # Right flank : TTTCCAATGTAAACGGGATGCGTATAATATTAGAGTGTCTCCCGCATACGTGGGGTGAACTGCAATGACTCATAAAATTACCTTGGGAGCTCACATGCCGATTGTTAAAAATGATGATGGATTGTCCCCTGAAGCCTACTTACTCGGAGAATCAACGAGCACCGTTAAACATGAGCTGATCGACGGGCAAGTGTATGCAATGGCTGGGGCAAGTGCTAATCATGAGCGAATTTGTCAAAATATGGCGAGAAAGCTTGGCAATCACCTTGAAGATTCACCGTGTGAGCCGTTTGGTTCAGATATGAAAGTGCGTGTACGAGACAACTTTTATTACCCCGATGTACTGGTTGATTGTAATTTCGACGAATCTGAACCCTACTTTACAACGACCCCCGTGATTATCGTTGAAGTGATCTCACGCTCAACCCGAAAAATGGACGAAAAGGTTAAATTGCTTGAGTACATTAATATACCCACGTTAGAAGAATATGTTGTGATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //