Array 1 121361-123728 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXDR01000008.1 Vibrio cholerae HC-36A1 vcoHC36A1.contig.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121361 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 121421 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 121481 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 121542 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 121602 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 121662 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 121722 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 121782 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 121842 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 121902 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 121962 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 122022 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 122081 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 122141 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 122201 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 122261 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 122321 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 122381 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 122441 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 122501 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 122561 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 122621 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 122681 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 122741 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 122801 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 122861 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 122921 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 122981 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 123041 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 123101 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 123161 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 123221 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 123281 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 123341 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 123401 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 123461 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 123521 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 123581 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 123641 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 123701 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //