Array 1 91549-93863 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLL01000009.1 Escherichia coli strain MOD1-EC6715 MOD1-EC6715_9_length_161640_cov_33.9135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91549 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 91609 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 91669 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 91729 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 91790 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 91850 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 91911 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 91971 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 92031 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 92091 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 92151 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 92211 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 92271 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 92331 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 92391 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 92451 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 92511 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 92571 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 92631 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 92691 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 92751 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 92811 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 92871 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 92932 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 92992 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 93052 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 93112 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 93172 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 93232 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 93292 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 93352 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 93412 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 93472 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 93532 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 93594 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 93654 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 93714 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 93774 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 93834 28 85.7 0 ....................A...C.CT | T,C [93854,93858] ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 102922-103771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLL01000009.1 Escherichia coli strain MOD1-EC6715 MOD1-EC6715_9_length_161640_cov_33.9135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 102922 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 102982 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 103042 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 103103 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 103163 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 103223 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 103284 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 103344 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 103404 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 103464 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 103525 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 103585 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 103645 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 103744 27 85.7 0 ...G...A...............-C... | T [103764] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //