Array 1 307033-304073 **** Predicted by CRISPRDetect 2.4 *** >NZ_OUNG01000001.1 Lactimicrobium massiliense strain Marseille-P4301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 307032 29 96.6 33 ............................T CCCGCATTTTCATCCAACATTCGCCAGGAACAA 306970 29 100.0 32 ............................. CTACCAGATTTCATTCTGTGATCGAAAGCCAA 306909 29 96.6 32 ............................T ATGGCATCTGGTGATGATTATCATGTCACGGT 306848 29 96.6 32 ............................T TACATCGGCATAATTCTGCTCGAAATCCTCGT 306787 29 96.6 32 ............................T CTGCTTTTCGGACGCCGGTCCCATCTCCCATC 306726 29 96.6 32 ............................T CAGTTCATGGGCAGCAATAATACTCTTATTCA 306665 29 100.0 32 ............................. ATGCTGAAATCCTCTGCTTTCCAGGAAGCGAA 306604 29 100.0 32 ............................. TATGCATCGCAATCGCAGAAGGCAGAGAGTGG 306543 29 100.0 32 ............................. ATGTGCCACATCATCTTTGGTCAGATAGATGG 306482 29 100.0 32 ............................. CTCAACAATGCTGCTGGAAATCGGAACTGGAA 306421 29 100.0 32 ............................. TGTTTTTATGCCGCTCGTTTTGCTGATGCTTG 306360 29 100.0 32 ............................. GCCTGCTCGGCTTTATTCAGAAGAATGGCAAA 306299 29 100.0 32 ............................. ATGTGCCACATCATCTTTGGTCAGATAGATGG 306238 29 100.0 32 ............................. CTCAACAATGCTGCTGGAAATCGGAACTGGAA 306177 29 100.0 32 ............................. TGTTTTTATGCCGCTCGTTTTGCTGATGCTTG 306116 29 100.0 32 ............................. GCCTGCTCGGCTTTATTCAGAAGAATGGCAAA 306055 29 100.0 32 ............................. TATGCAGCGGCCAACTCTGATAAGGCAAAGTA 305994 29 96.6 32 ............................T AACCTGTCCTTTTATGACGCCACCATTAAGTA 305933 29 96.6 32 ............................T GCGTTTCCAGATGAACGGTGATGTGGCCGGCG 305872 29 96.6 32 ............................T AGTTGCCGTTAGTATCTTTGGCTTTAATATAC 305811 29 96.6 32 ............................T TGACTGCTATGCGTGAGGTACTGAAAAAGCTG 305750 29 96.6 32 ............................T ATAAGCCATACGTGATACATCGCTAAATGAGG 305689 29 96.6 32 ............................T AAGGCTACGGTCACATTCACCAAGCAGATGAC 305628 29 100.0 32 ............................. GTTCTTGGCGGTTGACACATTATCCGTATCCA 305567 29 100.0 32 ............................. TAATCCCTCAAATGTCATGTCGTGTTCTTTCA 305506 29 100.0 32 ............................. CATGAGTTTTACCTAGTGAAACAACCTGTCAT 305445 29 96.6 32 ............................T CCACTGCTGCCGCTGTGCGTTCCTGGCCAGAA 305384 29 96.6 32 ............................T GCCGGAAAGTTGTGCAGACTGCCCCTTCCTTA 305323 29 100.0 33 ............................. TGGCACTGAATACCGGCTGAAGGATGTTGTCCC 305261 29 100.0 32 ............................. AGCCTTGACCGGATGATCCAGCAGTCAGTCAT 305200 29 100.0 32 ............................. GAGTATCAGGATAGTCTGGAGAAAGTCAACAA 305139 29 100.0 32 ............................. ACTACAAGTACAGTTACAAAGAAGCAAAGCTC 305078 29 96.6 32 ............................T CTCAGTCACTGTCGGATACTCGGAAACAGCAG 305017 29 96.6 32 ............................T GGCGCAGCAATGCGTGAAATGGGTTTTTCTGC 304956 29 96.6 32 ............................T GATAGGACCGTAATATCTGCCCCAGCCTACCA 304895 29 100.0 32 ............................. TGCCAGCTGTGAATTACATCGGCATAATTCTG 304834 29 96.6 32 ............................T AAGGACAAGACACACGAGTACAGATGGTATCC 304773 29 100.0 32 ............................. TGCCCGACAAGCTGCCGATGGATGCACCATTG 304712 29 96.6 32 ............................T CAGCTAGGCAATACAGCGTCGATCACTTATCA 304651 29 96.6 32 ............................T AACGCACAGGCTGATGTGAACAAAACGTCAAA 304590 29 96.6 32 ............................T ACAATTCTTGCCATCTACTGGGCCATCACAGA 304529 29 89.7 32 ..G.........C...............T CACAAAAATGTTGTCTATTATGAGGACTATCC 304468 29 89.7 32 ..G.........C...............T AACATCTTTGCTGATTCGTATGATTACACAAG 304407 29 93.1 32 ..G.........C................ AGGCTTGTGGCCAAGACTCCCACTGTGGAAGC 304346 29 89.7 32 ..G.........C...............T GGATTTTCCGCTGATTGTGTAGTTATACATGG 304285 29 89.7 32 ..G.........C...............T GCAAGCCGTTTCAAGTGGATTACAGATCGTGT 304224 29 89.7 33 ..G.........C...............T ATCGGGCAGCCATCGTGGGATGCATGGACAGAG 304162 29 89.7 32 ..G.....T...C................ TGCCCTATCCGCTTTTCTTTAATAGGAGGATG 304101 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 97.1 32 GTACTTCCCGCGTATGCGGGGGTGATCCC # Left flank : CATCCGGAACGTGATAAGATTATTGAGATTGGTGCAGTAAAATGGGATGGAATAACGGAAACGTTTTATAACGCACTTGTCAATATTCATGAAACAATTCCTCCGGTTATTAGTGGACTGACCGGCATCACCGATGATATGCTCAAAGGAGGAATGGATATTCAGTCTGCGTTACAGGAATTTTGTGACTTTATCGGTAATAATATTTTGGTTGGCTATAATTTGAGTTTTGACATGGATTTTTTAAACACTGCACTGCATAAATGCGGTATGCAAGGAATTGGCAATGATATTATAGATGTGCTTAAGACAGTAAAGAGGGAAAAACTGTTTCAAGAAAACTATAAGCTACAAACAACACTGAAATCGTATGGAATCAGTGGAACGGTACCACACAGAGCACTTGAAGATGCAAAGCTGATCTTTCAGTTATCAAACAAACTAAATGTTTTTTACAAATTTGAAAACTGAAAATGCCTATTTGAAGGGATCTTTTATCT # Right flank : GAATACAGAGTATATTTCCTCAGGATGAGGAAGTGCTTTCCGCTCATGTTAGATAGGTGGATATACATTGATGATTATCTGCAATGTATATGTTGGCGATATGTGCGTTGCTGTCAATGAGTGTCCTGTATTGCGATTTCGCTGGAAATGTAGTATAAACTACCTGCAGAAAACAAAGAAGTTGATTCATCTTTTTTGTATTGCGGGGTCATGGCGGAATCGGCAGACGCATCGGACTTAAAATCCGGTGATGGCAACATCGTGTGGGTTCAAGTCCCACTGGCCCCATCCTTGAAAAGCCCTTGAAACAGGGCTTTTTTGATGGCTCACAGCCTGAATTTCACTTGTGAGAAAATGGCAGGATTTTTATATTATTCAGGCCCATTTTGGTCTGCTTTTTCAGTTTCAAGTAGTCAGAAAAGTGGTCAGGCACTGTTAATCGTGCTGTCAGAGTGGTCAGAAAGTGGCAGCTTGTAACAACTGACTGTGAGAATAACATT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTTCCCGCGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14077-14575 **** Predicted by CRISPRDetect 2.4 *** >NZ_OUNG01000007.1 Lactimicrobium massiliense strain Marseille-P4301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14077 36 91.7 31 .CA.....G........................... CTCATCATAGCGAATCATCACACGCTTTGAA 14144 36 100.0 30 .................................... GTAGTATCATATGCTGAAAGCACCGTATAG 14210 36 100.0 30 .................................... GCGGTGCAGTGGGTGAAGTTGACCGATGCA 14276 36 100.0 30 .................................... ATGACGTCAAAGATTTGTGCGAAAGATTTG 14342 36 100.0 30 .................................... ATGGACCCACAGCTGAAGCCAATCAATTTC 14408 36 100.0 30 .................................... GTCTCCAACTGCCTTTAGATAGTCCTCAGA 14474 36 100.0 30 .................................... GCATGCCATGGTCTGGATGGTCTTGTGGTT 14540 34 80.6 0 ..........................A.AGTT..-- | GT [14565] Deletion [14574] ========== ====== ====== ====== ==================================== =============================== ================== 8 36 96.5 30 GTCTTACAACTTCCAGAAATCACATAGTTCCCAAAC # Left flank : GTCAAAGATGAAAGCGGAGCCCTCTCCGCCATCCTGACATTCCTATCCGCCCACTCCATCTCCATCCTGACCATCTCCCAGGCTGTACCCATTGCCCAGAAAGCCAACGTCCTGCTCTCCCTGGATATCTCCCACACATCCATGCCCATGGAAACACTGATCCAGAGCATCAGACAATTGCCATCTGTCAAAAGCGCCCATCTGGACGCCATGGAATAAGAAAAAGTGAGCTGATATCCGGCTCACTTTTCTTCTGAAGACTCACTGCCTTCCGGCTTTTCATCCTTCTTTTCTTCTTCACCCTGCGCAAACTCACCAAGCTTTAATTCCCTGCGCACCTTCTCCGGGATAAAATCCTCCGGTTCCCTGTAAACAGTTCTGACTTTCTTTGCCATGCCGCACCCCCCTGCTCTTTCTACTATTATCTTACCCCAAAGGAGTATCTCCGAAACAGGATTCACACATACAGCATTTTTCAGCCAGGAATAATGTGACGCTCT # Right flank : AATGAAAATGTCACCTTTCTGATTTTTTGAAAATGTCACCCTTTTACGGGATGGATATCAGTATTTGAGTAGAATGCCTCATTGGAGGTGTTCTATGAAGAACGATAAAGACAAGTCCGGAGCGTTGAAACTTCTGATTCAGAAGCAGAGCGATCCACATATCACTTACCAAGAGATAACTGAGAAAACTGGTTACAGTAAGAGACAGCTTATACGGCTTGCGGGGGAGCTGAATGAAAAGGATATGCAATCTATCCTTGTTCATGGTAATACCGGCAAGAAGCCAGTAACGACTGCCTCCGACCAAGAAGTCAGTTACTTAGAAGAATTCAAGAAAGCATATCCAAGCATTACCATAGCACAATTCAGAGATATCTACCGAGAGGATGTAATCTGGGGAAGAGATCCTGAGAGGAAAGGAGATGCAGCGAAATATGGACTGAAGGATAGAAGTAAATCTTGGTTCAGAGATCTTTTCGTACGAGAAGGTTGGAAGTCAC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTACAACTTCCAGAAATCACATAGTTCCCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 17021-15993 **** Predicted by CRISPRDetect 2.4 *** >NZ_OUNG01000007.1 Lactimicrobium massiliense strain Marseille-P4301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17020 36 100.0 30 .................................... ACTGGAAATACGCATACGCATAAGGAAGGA 16954 36 100.0 30 .................................... GTGGTGTTTTTCATGTTCACCACAATTCCT 16888 36 100.0 30 .................................... GAAAACTGCATTCTTATCCTCATCTTTGCA 16822 36 100.0 30 .................................... TATAACAAGGAATGGCGGGCCAAGAACCGC 16756 36 100.0 30 .................................... ATCCGATTTTGTATTTTCCCCATTCCTGCA 16690 36 100.0 30 .................................... GACAAACACCTTGTCATTGTCCTTTTCCCA 16624 36 100.0 30 .................................... AGTCGCCTGCTCTCACTCGTTTCACGTTAC 16558 36 100.0 30 .................................... GGAACAGAAATGCTAACGACTTCAGATGTT 16492 36 100.0 30 .................................... TGTTATTCCCATGTTATCCTGCACCAGATG 16426 36 100.0 31 .................................... CAAAAGATTCTCTGGTTATAACAGATGCGCT 16359 36 100.0 30 .................................... TGAATCCGAACTCTTTAATGCTGTTAGCCA 16293 36 100.0 31 .................................... ACTGTTGAATCTTTTCCACCGCTAAATGAAA 16226 36 100.0 30 .................................... AACACTTGTAAGCAATGCCTTCAATGCCTT 16160 36 100.0 30 .................................... AAAAGAGCCTGGTCTAAGCTCGAGGCTGCA 16094 36 100.0 30 .................................... AGCAAAGAATCCGGAAAGAACACATCTGGC 16028 36 91.7 0 ............................GT.....T | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.5 30 GTTTGGGAACTATGTGATTTCTGGAAGTTGTAAGAC # Left flank : GGAAAATCATCACGAGATTAATTCAGGATATTGCAAAAGAGTACGCAGGTACACAAGCATTTTATGATGTACTTAAAGCATTAAACAAATTTGGATGCATTGTCTGTGATAATTCATCTTTTCCGCTGGTTTTTAATGATGCCGTGCAGATCCCGGATGTGGCGAAACTGCTTGCTTTTCATTTTGATGAGCAATGTGAAGACTTGATGGATGAATTTCTGCAATATTGCAATCTGAGCATGCAGATATTGAAAAAGAAAATATTTGTCACTGTTGGATTGAAGGATATTATCAACAGTAATGAATATGAAGCTGCAATAAAAACCGCATGTTATCAGCACATTCCGCTGTTGATGATTGAACGTCACACACATGATGAAATGGATGATCCGAAAAACATGACTATCATCGATAAAGATATGTGTGTACTATAAGGGTGATCTTATGCTTCCAGATCCGTACTACTATGCGGTAAAATCACTATTTTTCACCAATTTGAG # Right flank : TTTTTGATTTTGTCACCGTTTGTTAATTGTTACTGTTTTGTCACGAATACTACTTTCTATGATCTTCCAGAACACTGAGGATGCGCTGTACGTCCTTCTGACTGTCCGCTTCATAGATCGGATCTCTTCTACGCTCGCCCACCTTTACGCATTTGTAGTGTTTGCCATATCGATTGATGTACATTTCTTCAGTAAAGGCATCAATCTTCACAGTAATAGGTGTCTTCTGATAGATTTCGAACATTACTCCATCAGCGTCAAAGGCTTCATATAATGAGTTTCCCATCGAAAACATATTGTTTCTCATGGTCCTTGGATATTCCGCATAGAACACGGCAGAATAATCAAAATCTGTCGGAAGCGGACGAAATGCATCGACTGGATCCAGAACCGGGAATGAGAACTTTGCGTTGAGATAACGAATGTACTTCTCATTAAACCAGCGGTTCAGCGTGTTGTAGTTATGTGGAATATGGAATCGAATGATATCATTCGGAAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGGAACTATGTGATTTCTGGAAGTTGTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //